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Items: 43

1.

Antiparallel Coiled-Coil Interactions Mediate the Homodimerization of the DNA Damage-Repair Protein PALB2.

Song F, Li M, Liu G, Swapna GVT, Daigham NS, Xia B, Montelione GT, Bunting SF.

Biochemistry. 2018 Nov 27;57(47):6581-6591. doi: 10.1021/acs.biochem.8b00789. Epub 2018 Nov 8.

PMID:
30289697
2.

Minimal Heterochiral de Novo Designed 4Fe-4S Binding Peptide Capable of Robust Electron Transfer.

Kim JD, Pike DH, Tyryshkin AM, Swapna GVT, Raanan H, Montelione GT, Nanda V, Falkowski PG.

J Am Chem Soc. 2018 Sep 12;140(36):11210-11213. doi: 10.1021/jacs.8b07553. Epub 2018 Aug 29.

PMID:
30141918
3.

Effect of mitochondrial uncouplers niclosamide ethanolamine (NEN) and oxyclozanide on hepatic metastasis of colon cancer.

Alasadi A, Chen M, Swapna GVT, Tao H, Guo J, Collantes J, Fadhil N, Montelione GT, Jin S.

Cell Death Dis. 2018 Feb 13;9(2):215. doi: 10.1038/s41419-017-0092-6.

4.

Backbone and Ile-δ1, Leu, Val methyl 1H, 15N, and 13C, chemical shift assignments for Rhizopus chinensis lipase.

Zhang M, Yu XW, Swapna GVT, Liu G, Xiao R, Xu Y, Montelione GT.

Biomol NMR Assign. 2018 Apr;12(1):63-68. doi: 10.1007/s12104-017-9781-4. Epub 2017 Sep 19.

PMID:
28929427
5.

13 C metabolic flux profiling of Pichia pastoris grown in aerobic batch cultures on glucose revealed high relative anabolic use of TCA cycle and limited incorporation of provided precursors of branched-chain amino acids.

Zhang M, Yu XW, Xu Y, Jouhten P, Swapna GVT, Glaser RW, Hunt JF, Montelione GT, Maaheimo H, Szyperski T.

FEBS J. 2017 Sep;284(18):3100-3113. doi: 10.1111/febs.14180. Epub 2017 Aug 7.

6.

Multiple helical conformations of the helix-turn-helix region revealed by NOE-restrained MD simulations of tryptophan aporepressor, TrpR.

Harish B, Swapna GV, Kornhaber GJ, Montelione GT, Carey J.

Proteins. 2017 Apr;85(4):731-740. doi: 10.1002/prot.25252. Epub 2017 Feb 22.

7.

Principles for designing proteins with cavities formed by curved β sheets.

Marcos E, Basanta B, Chidyausiku TM, Tang Y, Oberdorfer G, Liu G, Swapna GV, Guan R, Silva DA, Dou J, Pereira JH, Xiao R, Sankaran B, Zwart PH, Montelione GT, Baker D.

Science. 2017 Jan 13;355(6321):201-206. doi: 10.1126/science.aah7389.

8.

Efficient production of (2)H, (13)C, (15)N-enriched industrial enzyme Rhizopus chinensis lipase with native disulfide bonds.

Zhang M, Yu XW, Swapna GV, Xiao R, Zheng H, Sha C, Xu Y, Montelione GT.

Microb Cell Fact. 2016 Jul 13;15(1):123. doi: 10.1186/s12934-016-0522-7.

9.

A community resource of experimental data for NMR / X-ray crystal structure pairs.

Everett JK, Tejero R, Murthy SB, Acton TB, Aramini JM, Baran MC, Benach J, Cort JR, Eletsky A, Forouhar F, Guan R, Kuzin AP, Lee HW, Liu G, Mani R, Mao B, Mills JL, Montelione AF, Pederson K, Powers R, Ramelot T, Rossi P, Seetharaman J, Snyder D, Swapna GV, Vorobiev SM, Wu Y, Xiao R, Yang Y, Arrowsmith CH, Hunt JF, Kennedy MA, Prestegard JH, Szyperski T, Tong L, Montelione GT.

Protein Sci. 2016 Jan;25(1):30-45. doi: 10.1002/pro.2774. Epub 2015 Sep 22. Review.

10.

Aspirin's Active Metabolite Salicylic Acid Targets High Mobility Group Box 1 to Modulate Inflammatory Responses.

Choi HW, Tian M, Song F, Venereau E, Preti A, Park SW, Hamilton K, Swapna GV, Manohar M, Moreau M, Agresti A, Gorzanelli A, De Marchis F, Wang H, Antonyak M, Micikas RJ, Gentile DR, Cerione RA, Schroeder FC, Montelione GT, Bianchi ME, Klessig DF.

Mol Med. 2015 Jun 18;21:526-35. doi: 10.2119/molmed.2015.00148.

11.

Altering murine leukemia virus integration through disruption of the integrase and BET protein family interaction.

Aiyer S, Swapna GV, Malani N, Aramini JM, Schneider WM, Plumb MR, Ghanem M, Larue RC, Sharma A, Studamire B, Kvaratskhelia M, Bushman FD, Montelione GT, Roth MJ.

Nucleic Acids Res. 2014 May;42(9):5917-28. doi: 10.1093/nar/gku175. Epub 2014 Mar 12.

12.

(19)F NMR reveals multiple conformations at the dimer interface of the nonstructural protein 1 effector domain from influenza A virus.

Aramini JM, Hamilton K, Ma LC, Swapna GVT, Leonard PG, Ladbury JE, Krug RM, Montelione GT.

Structure. 2014 Apr 8;22(4):515-525. doi: 10.1016/j.str.2014.01.010. Epub 2014 Feb 27.

13.

Three structural representatives of the PF06855 protein domain family from Staphyloccocus aureus and Bacillus subtilis have SAM domain-like folds and different functions.

Swapna GV, Rossi P, Montelione AF, Benach J, Yu B, Abashidze M, Seetharaman J, Xiao R, Acton TB, Tong L, Montelione GT.

J Struct Funct Genomics. 2012 Sep;13(3):163-70. doi: 10.1007/s10969-012-9134-6. Epub 2012 Jul 29.

14.

Segmental isotope labeling of proteins for NMR structural study using a protein S tag for higher expression and solubility.

Kobayashi H, Swapna GV, Wu KP, Afinogenova Y, Conover K, Mao B, Montelione GT, Inouye M.

J Biomol NMR. 2012 Apr;52(4):303-13. doi: 10.1007/s10858-012-9610-0. Epub 2012 Mar 3.

15.

Backbone and Ile-δ1, Leu, Val methyl 1H, 13C and 15N NMR chemical shift assignments for human interferon-stimulated gene 15 protein.

Yin C, Aramini JM, Ma LC, Cort JR, Swapna GV, Krug RM, Montelione GT.

Biomol NMR Assign. 2011 Oct;5(2):215-9. doi: 10.1007/s12104-011-9303-8. Epub 2011 May 5.

16.

Preparation of protein samples for NMR structure, function, and small-molecule screening studies.

Acton TB, Xiao R, Anderson S, Aramini J, Buchwald WA, Ciccosanti C, Conover K, Everett J, Hamilton K, Huang YJ, Janjua H, Kornhaber G, Lau J, Lee DY, Liu G, Maglaqui M, Ma L, Mao L, Patel D, Rossi P, Sahdev S, Shastry R, Swapna GV, Tang Y, Tong S, Wang D, Wang H, Zhao L, Montelione GT.

Methods Enzymol. 2011;493:21-60. doi: 10.1016/B978-0-12-381274-2.00002-9.

17.

Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold.

Mani R, Vorobiev S, Swapna GV, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT.

J Struct Funct Genomics. 2011 Mar;12(1):27-32. doi: 10.1007/s10969-010-9099-2. Epub 2010 Dec 14.

18.

The high-throughput protein sample production platform of the Northeast Structural Genomics Consortium.

Xiao R, Anderson S, Aramini J, Belote R, Buchwald WA, Ciccosanti C, Conover K, Everett JK, Hamilton K, Huang YJ, Janjua H, Jiang M, Kornhaber GJ, Lee DY, Locke JY, Ma LC, Maglaqui M, Mao L, Mitra S, Patel D, Rossi P, Sahdev S, Sharma S, Shastry R, Swapna GV, Tong SN, Wang D, Wang H, Zhao L, Montelione GT, Acton TB.

J Struct Biol. 2010 Oct;172(1):21-33. doi: 10.1016/j.jsb.2010.07.011. Epub 2010 Aug 3.

19.

Solution NMR structure of Lin0431 protein from Listeria innocua reveals high structural similarity with domain II of bacterial transcription antitermination protein NusG.

Tang Y, Xiao R, Ciccosanti C, Janjua H, Lee DY, Everett JK, Swapna GV, Acton TB, Rost B, Montelione GT.

Proteins. 2010 Aug 15;78(11):2563-8. doi: 10.1002/prot.22760. No abstract available.

20.

Engineering of a wheat germ expression system to provide compatibility with a high throughput pET-based cloning platform.

Zhao L, Zhao KQ, Hurst R, Slater MR, Acton TB, Swapna GV, Shastry R, Kornhaber GJ, Montelione GT.

J Struct Funct Genomics. 2010 Sep;11(3):201-9. doi: 10.1007/s10969-010-9093-8. Epub 2010 Jun 24.

21.

A microscale protein NMR sample screening pipeline.

Rossi P, Swapna GV, Huang YJ, Aramini JM, Anklin C, Conover K, Hamilton K, Xiao R, Acton TB, Ertekin A, Everett JK, Montelione GT.

J Biomol NMR. 2010 Jan;46(1):11-22. doi: 10.1007/s10858-009-9386-z. Epub 2009 Nov 14.

22.

Construct optimization for protein NMR structure analysis using amide hydrogen/deuterium exchange mass spectrometry.

Sharma S, Zheng H, Huang YJ, Ertekin A, Hamuro Y, Rossi P, Tejero R, Acton TB, Xiao R, Jiang M, Zhao L, Ma LC, Swapna GV, Aramini JM, Montelione GT.

Proteins. 2009 Sep;76(4):882-94. doi: 10.1002/prot.22394.

23.

Solution NMR structure of the SOS response protein YnzC from Bacillus subtilis.

Aramini JM, Sharma S, Huang YJ, Swapna GV, Ho CK, Shetty K, Cunningham K, Ma LC, Zhao L, Owens LA, Jiang M, Xiao R, Liu J, Baran MC, Acton TB, Rost B, Montelione GT.

Proteins. 2008 Jul;72(1):526-30. doi: 10.1002/prot.22064. No abstract available.

PMID:
18431750
24.

Solution NMR structure of Escherichia coli ytfP expands the structural coverage of the UPF0131 protein domain family.

Aramini JM, Huang YJ, Swapna GV, Cort JR, Rajan PK, Xiao R, Shastry R, Acton TB, Liu J, Rost B, Kennedy MA, Montelione GT.

Proteins. 2007 Aug 15;68(3):789-95. No abstract available.

PMID:
17523190
25.

Conserved surface features form the double-stranded RNA binding site of non-structural protein 1 (NS1) from influenza A and B viruses.

Yin C, Khan JA, Swapna GV, Ertekin A, Krug RM, Tong L, Montelione GT.

J Biol Chem. 2007 Jul 13;282(28):20584-92. Epub 2007 May 1.

26.

Solution NMR structure of the junction between tropomyosin molecules: implications for actin binding and regulation.

Greenfield NJ, Huang YJ, Swapna GV, Bhattacharya A, Rapp B, Singh A, Montelione GT, Hitchcock-DeGregori SE.

J Mol Biol. 2006 Nov 17;364(1):80-96. Epub 2006 Aug 17.

PMID:
16999976
27.

1H, 13C, and 15N resonance assignments for Escherichia coli ytfP, a member of the broadly conserved UPF0131 protein domain family.

Aramini JM, Swapna GV, Huang YJ, Rajan PK, Xiao R, Shastry R, Acton TB, Cort JR, Kennedy MA, Montelione GT.

J Biomol NMR. 2005 Nov;33(3):197. No abstract available.

PMID:
16331424
28.

Comparisons of NMR spectral quality and success in crystallization demonstrate that NMR and X-ray crystallography are complementary methods for small protein structure determination.

Snyder DA, Chen Y, Denissova NG, Acton T, Aramini JM, Ciano M, Karlin R, Liu J, Manor P, Rajan PA, Rossi P, Swapna GV, Xiao R, Rost B, Hunt J, Montelione GT.

J Am Chem Soc. 2005 Nov 30;127(47):16505-11.

PMID:
16305237
29.
30.

Robotic cloning and Protein Production Platform of the Northeast Structural Genomics Consortium.

Acton TB, Gunsalus KC, Xiao R, Ma LC, Aramini J, Baran MC, Chiang YW, Climent T, Cooper B, Denissova NG, Douglas SM, Everett JK, Ho CK, Macapagal D, Rajan PK, Shastry R, Shih LY, Swapna GV, Wilson M, Wu M, Gerstein M, Inouye M, Hunt JF, Montelione GT.

Methods Enzymol. 2005;394:210-43.

PMID:
15808222
31.

Cold-shock induced high-yield protein production in Escherichia coli.

Qing G, Ma LC, Khorchid A, Swapna GV, Mal TK, Takayama MM, Xia B, Phadtare S, Ke H, Acton T, Montelione GT, Ikura M, Inouye M.

Nat Biotechnol. 2004 Jul;22(7):877-82. Epub 2004 Jun 13.

PMID:
15195104
32.

Backbone 1H, 15N and 13C assignments for the 21 kDa Caenorhabditis elegans homologue of "brain-specific" protein.

Monleón D, Chiang Y, Aramini JM, Swapna GV, Macapagal D, Gunsalus KC, Kim S, Szyperski T, Montelione GT.

J Biomol NMR. 2004 Jan;28(1):91-2. No abstract available.

PMID:
14739645
33.

Structure of antibacterial peptide microcin J25: a 21-residue lariat protoknot.

Bayro MJ, Mukhopadhyay J, Swapna GV, Huang JY, Ma LC, Sineva E, Dawson PE, Montelione GT, Ebright RH.

J Am Chem Soc. 2003 Oct 15;125(41):12382-3.

PMID:
14531661
34.

Automated protein fold determination using a minimal NMR constraint strategy.

Zheng D, Huang YJ, Moseley HN, Xiao R, Aramini J, Swapna GV, Montelione GT.

Protein Sci. 2003 Jun;12(6):1232-46.

35.

Solution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli.

Huang YJ, Swapna GV, Rajan PK, Ke H, Xia B, Shukla K, Inouye M, Montelione GT.

J Mol Biol. 2003 Mar 21;327(2):521-36.

PMID:
12628255
36.

The structure of the carboxyl terminus of striated alpha-tropomyosin in solution reveals an unusual parallel arrangement of interacting alpha-helices.

Greenfield NJ, Swapna GV, Huang Y, Palm T, Graboski S, Montelione GT, Hitchcock-DeGregori SE.

Biochemistry. 2003 Jan 28;42(3):614-9.

PMID:
12534273
37.

Semi-automated backbone resonance assignments of the extracellular ligand-binding domain of an ionotropic glutamate receptor.

McFeeters RL, Swapna GV, Montelione GT, Oswald RE.

J Biomol NMR. 2002 Mar;22(3):297-8. No abstract available.

PMID:
11991359
38.

Resonance assignments for cold-shock protein ribosome-binding factor A (RbfA) from Escherichia coli.

Swapna GV, Shukla K, Huang YJ, Ke H, Xia B, Inouye M, Montelione GT.

J Biomol NMR. 2001 Dec;21(4):389-90. No abstract available.

PMID:
11824762
39.

Solution NMR structure and folding dynamics of the N terminus of a rat non-muscle alpha-tropomyosin in an engineered chimeric protein.

Greenfield NJ, Huang YJ, Palm T, Swapna GV, Monleon D, Montelione GT, Hitchcock-DeGregori SE.

J Mol Biol. 2001 Sep 28;312(4):833-47.

PMID:
11575936
40.

Solution NMR evidence for a cis Tyr-Ala peptide group in the structure of [Pro93Ala] bovine pancreatic ribonuclease A.

Xiong Y, Juminaga D, Swapna GV, Wedemeyer WJ, Scheraga HA, Montelione GT.

Protein Sci. 2000 Feb;9(2):421-6.

41.

Sensitivity-enhanced sim-CT HMQC PFG-HBHA(CO)NH and PFG-CBCA(CO)NH triple-resonance experiments.

Swapna GV, Montelione GT.

J Magn Reson. 1999 Apr;137(2):437-42.

PMID:
10089179
42.
43.

NMR investigation on the structure and conformation of 3'-azido-2',3'-dideoxyribosylthymine (AZT), an inhibitor of the HIV (AIDS virus).

Swapna GV, Jagannadh B, Gurjar MK, Kunwar AC.

Biochem Biophys Res Commun. 1989 Nov 15;164(3):1086-92.

PMID:
2590188

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