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Items: 1 to 50 of 87

1.

Indirect sexual selection drives rapid sperm protein evolution in abalone.

Wilburn DB, Tuttle LM, Klevit RE, Swanson WJ.

Elife. 2019 Dec 23;8. pii: e52628. doi: 10.7554/eLife.52628.

2.

A conversation with Mariana Wolfner, newly inducted member of the National Academy of Sciences.

Swanson WJ, Findlay GD.

Mol Reprod Dev. 2020 Jan;87(1):3-6. doi: 10.1002/mrd.23298. Epub 2019 Nov 17.

PMID:
31736234
3.

Efficacy of Cell-Based Therapies for Traumatic Brain Injuries.

Chrostek MR, Fellows EG, Guo WL, Swanson WJ, Crane AT, Cheeran MC, Low WC, Grande AW.

Brain Sci. 2019 Oct 10;9(10). pii: E270. doi: 10.3390/brainsci9100270.

4.

Conservation of molecular and cellular phenotypes of invariant NKT cells between humans and non-human primates.

Yu KKQ, Wilburn DB, Hackney JA, Darrah PA, Foulds KE, James CA, Smith MT, Jing L, Seder RA, Roederer M, Koelle DM, Swanson WJ, Seshadri C.

Immunogenetics. 2019 Jul;71(7):465-478. doi: 10.1007/s00251-019-01118-9. Epub 2019 May 23.

5.

RNA-seq data from mature male gonads of marine mussels Mytilus edulis and M. galloprovincialis.

Diz AP, Romero MR, Pérez-Figueroa A, Swanson WJ, Skibinski DOF.

Data Brief. 2018 Oct 3;21:167-175. doi: 10.1016/j.dib.2018.09.086. eCollection 2018 Dec.

6.

RNA-seq coupled to proteomic analysis reveals high sperm proteome variation between two closely related marine mussel species.

Romero MR, Pérez-Figueroa A, Carrera M, Swanson WJ, Skibinski DOF, Diz AP.

J Proteomics. 2019 Feb 10;192:169-187. doi: 10.1016/j.jprot.2018.08.020. Epub 2018 Sep 4.

7.

Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems.

Claw KG, George RD, MacCoss MJ, Swanson WJ.

BMC Genomics. 2018 Jun 22;19(1):488. doi: 10.1186/s12864-018-4872-x.

8.

A Diverse Lipid Antigen-Specific TCR Repertoire Is Clonally Expanded during Active Tuberculosis.

DeWitt WS, Yu KKQ, Wilburn DB, Sherwood A, Vignali M, Day CL, Scriba TJ, Robins HS, Swanson WJ, Emerson RO, Bradley PH, Seshadri C.

J Immunol. 2018 Aug 1;201(3):888-896. doi: 10.4049/jimmunol.1800186. Epub 2018 Jun 18.

9.

Egg Coat Proteins Across Metazoan Evolution.

Killingbeck EE, Swanson WJ.

Curr Top Dev Biol. 2018;130:443-488. doi: 10.1016/bs.ctdb.2018.03.005. Epub 2018 May 7. Review.

10.

Solution structure of sperm lysin yields novel insights into molecular dynamics of rapid protein evolution.

Wilburn DB, Tuttle LM, Klevit RE, Swanson WJ.

Proc Natl Acad Sci U S A. 2018 Feb 6;115(6):1310-1315. doi: 10.1073/pnas.1709061115. Epub 2018 Jan 18.

11.

Evolution of microRNA in primates.

McCreight JC, Schneider SE, Wilburn DB, Swanson WJ.

PLoS One. 2017 Jun 22;12(6):e0176596. doi: 10.1371/journal.pone.0176596. eCollection 2017.

12.

The "ZP domain" is not one, but likely two independent domains.

Wilburn DB, Swanson WJ.

Mol Reprod Dev. 2017 Apr;84(4):284-285. doi: 10.1002/mrd.22781. Epub 2017 Feb 28. No abstract available.

13.

Human enamel thickness and ENAM polymorphism.

Daubert DM, Kelley JL, Udod YG, Habor C, Kleist CG, Furman IK, Tikonov IN, Swanson WJ, Roberts FA.

Int J Oral Sci. 2016 Jun 30;8(2):93-7. doi: 10.1038/ijos.2016.1.

14.

From molecules to mating: Rapid evolution and biochemical studies of reproductive proteins.

Wilburn DB, Swanson WJ.

J Proteomics. 2016 Mar 1;135:12-25. doi: 10.1016/j.jprot.2015.06.007. Epub 2015 Jun 11. Review.

15.

Mechanical Control of Graphene on Engineered Pyramidal Strain Arrays.

Gill ST, Hinnefeld JH, Zhu S, Swanson WJ, Li T, Mason N.

ACS Nano. 2015 Jun 23;9(6):5799-806. doi: 10.1021/acsnano.5b00335. Epub 2015 May 26.

PMID:
25970764
16.

Detecting coevolution in mammalian sperm-egg fusion proteins.

Claw KG, George RD, Swanson WJ.

Mol Reprod Dev. 2014 Jun;81(6):531-8. doi: 10.1002/mrd.22321. Epub 2014 May 22.

17.

Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity.

Ferreira Z, Hurle B, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Gonder MK, Stone AC, Tishkoff S, Swanson WJ; NISC Comparative Sequencing Program, Green ED, Clark AG, Seixas S.

Genome Biol Evol. 2013;5(12):2512-23. doi: 10.1093/gbe/evt198. Erratum in: Genome Biol Evol. 2014;6(2):406.

18.

Selection on plant male function genes identifies candidates for reproductive isolation of yellow monkeyflowers.

Aagaard JE, George RD, Fishman L, Maccoss MJ, Swanson WJ.

PLoS Genet. 2013;9(12):e1003965. doi: 10.1371/journal.pgen.1003965. Epub 2013 Dec 5.

19.

Mass spectrometry and next-generation sequencing reveal an abundant and rapidly evolving abalone sperm protein.

Palmer MR, McDowall MH, Stewart L, Ouaddi A, MacCoss MJ, Swanson WJ.

Mol Reprod Dev. 2013 Jun;80(6):460-5. doi: 10.1002/mrd.22182. Epub 2013 May 1.

20.

Duplicate abalone egg coat proteins bind sperm lysin similarly, but evolve oppositely, consistent with molecular mimicry at fertilization.

Aagaard JE, Springer SA, Soelberg SD, Swanson WJ.

PLoS Genet. 2013;9(2):e1003287. doi: 10.1371/journal.pgen.1003287. Epub 2013 Feb 7.

21.

Reproduction and immunity-driven natural selection in the human WFDC locus.

Ferreira Z, Seixas S, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Swanson WJ; NISC Comparative Sequencing Program, Clark AG, Green ED, Hurle B.

Mol Biol Evol. 2013 Apr;30(4):938-50. doi: 10.1093/molbev/mss329. Epub 2013 Jan 4.

22.

Positive selection within a diatom species acts on putative protein interactions and transcriptional regulation.

Koester JA, Swanson WJ, Armbrust EV.

Mol Biol Evol. 2013 Feb;30(2):422-34. doi: 10.1093/molbev/mss242. Epub 2012 Oct 23.

23.

Evolution of the egg: new findings and challenges.

Claw KG, Swanson WJ.

Annu Rev Genomics Hum Genet. 2012;13:109-25. doi: 10.1146/annurev-genom-090711-163745. Epub 2012 Jun 6. Review.

PMID:
22703177
24.

The Tegula tango: a coevolutionary dance of interacting, positively selected sperm and egg proteins.

Hellberg ME, Dennis AB, Arbour-Reily P, Aagaard JE, Swanson WJ.

Evolution. 2012 Jun;66(6):1681-94. doi: 10.1111/j.1558-5646.2011.01530.x. Epub 2012 Jan 9.

PMID:
22671539
25.

Trans genomic capture and sequencing of primate exomes reveals new targets of positive selection.

George RD, McVicker G, Diederich R, Ng SB, MacKenzie AP, Swanson WJ, Shendure J, Thomas JH.

Genome Res. 2011 Oct;21(10):1686-94. doi: 10.1101/gr.121327.111. Epub 2011 Jul 27.

26.

Selection in the rapid evolution of gamete recognition proteins in marine invertebrates.

Vacquier VD, Swanson WJ.

Cold Spring Harb Perspect Biol. 2011 Nov 1;3(11):a002931. doi: 10.1101/cshperspect.a002931. Review.

27.

Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling.

Dean MD, Findlay GD, Hoopmann MR, Wu CC, MacCoss MJ, Swanson WJ, Nachman MW.

BMC Genomics. 2011 Jun 10;12:306. doi: 10.1186/1471-2164-12-306.

28.

Beyond the phenotypic gambit: molecular behavioural ecology and the evolution of genetic architecture.

Springer SA, Crespi BJ, Swanson WJ.

Mol Ecol. 2011 Jun;20(11):2240-57. doi: 10.1111/j.1365-294X.2011.05116.x. Epub 2011 Apr 21. Review.

PMID:
21507096
29.

The molecular basis of sex: linking yeast to human.

Swanson WJ, Aagaard JE, Vacquier VD, Monné M, Sadat Al Hosseini H, Jovine L.

Mol Biol Evol. 2011 Jul;28(7):1963-6. doi: 10.1093/molbev/msr026. Epub 2011 Jan 31.

30.

Functional diversification and evolution of antifreeze proteins in the antarctic fish Lycodichthys dearborni.

Kelley JL, Aagaard JE, MacCoss MJ, Swanson WJ.

J Mol Evol. 2010 Aug;71(2):111-8. doi: 10.1007/s00239-010-9367-6. Epub 2010 Aug 5.

PMID:
20686757
31.

Detecting coevolution through allelic association between physically unlinked loci.

Rohlfs RV, Swanson WJ, Weir BS.

Am J Hum Genet. 2010 May 14;86(5):674-85. doi: 10.1016/j.ajhg.2010.03.001. Epub 2010 Apr 8.

32.

Proteomics enhances evolutionary and functional analysis of reproductive proteins.

Findlay GD, Swanson WJ.

Bioessays. 2010 Jan;32(1):26-36. doi: 10.1002/bies.200900127. Review.

PMID:
20020477
33.

ZP domain proteins in the abalone egg coat include a paralog of VERL under positive selection that binds lysin and 18-kDa sperm proteins.

Aagaard JE, Vacquier VD, MacCoss MJ, Swanson WJ.

Mol Biol Evol. 2010 Jan;27(1):193-203. doi: 10.1093/molbev/msp221.

34.

Coevolution of interacting fertilization proteins.

Clark NL, Gasper J, Sekino M, Springer SA, Aquadro CF, Swanson WJ.

PLoS Genet. 2009 Jul;5(7):e1000570. doi: 10.1371/journal.pgen.1000570. Epub 2009 Jul 24.

35.

Bindin from a sea star.

Patiño S, Aagaard JE, MacCoss MJ, Swanson WJ, Hart MW.

Evol Dev. 2009 Jul-Aug;11(4):376-81. doi: 10.1111/j.1525-142X.2009.00344.x.

36.

Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus).

Dean MD, Clark NL, Findlay GD, Karn RC, Yi X, Swanson WJ, MacCoss MJ, Nachman MW.

Mol Biol Evol. 2009 Aug;26(8):1733-43. doi: 10.1093/molbev/msp094. Epub 2009 May 6.

37.

Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila.

Findlay GD, MacCoss MJ, Swanson WJ.

Genome Res. 2009 May;19(5):886-96. doi: 10.1101/gr.089391.108.

38.
39.

Adaptive evolution in rodent seminal vesicle secretion proteins.

Karn RC, Clark NL, Nguyen ED, Swanson WJ.

Mol Biol Evol. 2008 Nov;25(11):2301-10. doi: 10.1093/molbev/msn182. Epub 2008 Aug 20.

40.

Proteomics reveals novel Drosophila seminal fluid proteins transferred at mating.

Findlay GD, Yi X, Maccoss MJ, Swanson WJ.

PLoS Biol. 2008 Jul 29;6(7):e178. doi: 10.1371/journal.pbio.0060178. Erratum in: PLoS Biol. 2009 Jun;7(6). doi: 10.1371/annotation/2177fe97-a5bc-45d5-8fa9-5c3639dda4f3.

41.

Oyster sperm bindin is a combinatorial fucose lectin with remarkable intra-species diversity.

Springer SA, Moy GW, Friend DS, Swanson WJ, Vacquier VD.

Int J Dev Biol. 2008;52(5-6):759-68. doi: 10.1387/ijdb.082581ss.

42.

Positive selection in the human genome: from genome scans to biological significance.

Kelley JL, Swanson WJ.

Annu Rev Genomics Hum Genet. 2008;9:143-60. doi: 10.1146/annurev.genom.9.081307.164411. Review.

PMID:
18505377
43.

Extraordinary intraspecific diversity in oyster sperm bindin.

Moy GW, Springer SA, Adams SL, Swanson WJ, Vacquier VD.

Proc Natl Acad Sci U S A. 2008 Feb 12;105(6):1993-8. doi: 10.1073/pnas.0711862105. Epub 2008 Feb 11.

44.

Dietary change and adaptive evolution of enamelin in humans and among primates.

Kelley JL, Swanson WJ.

Genetics. 2008 Mar;178(3):1595-603. doi: 10.1534/genetics.107.077123. Epub 2008 Feb 1.

45.

Adaptive evolution in an avian reproductive protein: ZP3.

Calkins JD, El-Hinn D, Swanson WJ.

J Mol Evol. 2007 Nov;65(5):555-63. Epub 2007 Oct 2.

PMID:
17909693
46.

Gene duplication and adaptive evolution of digestive proteases in Drosophila arizonae female reproductive tracts.

Kelleher ES, Swanson WJ, Markow TA.

PLoS Genet. 2007 Aug;3(8):e148. Epub 2007 Jul 18.

47.

Duplication and selection on abalone sperm lysin in an allopatric population.

Clark NL, Findlay GD, Yi X, MacCoss MJ, Swanson WJ.

Mol Biol Evol. 2007 Sep;24(9):2081-90. Epub 2007 Jul 13.

PMID:
17630281
48.

Evidence of amino acid diversity-enhancing selection within humans and among primates at the candidate sperm-receptor gene PKDREJ.

Hamm D, Mautz BS, Wolfner MF, Aquadro CF, Swanson WJ.

Am J Hum Genet. 2007 Jul;81(1):44-52. Epub 2007 May 8.

49.

Identification and comparative analysis of accessory gland proteins in Orthoptera.

Braswell WE, Andrés JA, Maroja LS, Harrison RG, Howard DJ, Swanson WJ.

Genome. 2006 Sep;49(9):1069-80.

PMID:
17110987
50.

Rapidly evolving zona pellucida domain proteins are a major component of the vitelline envelope of abalone eggs.

Aagaard JE, Yi X, MacCoss MJ, Swanson WJ.

Proc Natl Acad Sci U S A. 2006 Nov 14;103(46):17302-7. Epub 2006 Nov 3.

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