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Junctional tumor suppressors interact with 14-3-3 proteins to control planar spindle alignment.

Nakajima YI, Lee ZT, McKinney SA, Swanson SK, Florens L, Gibson MC.

J Cell Biol. 2019 May 14. pii: jcb.201803116. doi: 10.1083/jcb.201803116. [Epub ahead of print]


Host Vesicle Fusion Protein VAPB Contributes to the Nuclear Egress Stage of Herpes Simplex Virus Type-1 (HSV-1) Replication.

Saiz-Ros N, Czapiewski R, Epifano I, Stevenson A, Swanson SK, Dixon CR, Zamora DB, McElwee M, Vijayakrishnan S, Richardson CA, Dong L, Kelly DA, Pytowski L, Goldberg MW, Florens L, Graham SV, Schirmer EC.

Cells. 2019 Feb 3;8(2). pii: E120. doi: 10.3390/cells8020120.


The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability.

Torres-Zelada EF, Stephenson RE, Alpsoy A, Anderson BD, Swanson SK, Florens L, Dykhuizen EC, Washburn MP, Weake VM.

J Cell Sci. 2019 Jan 16;132(2). pii: jcs214072. doi: 10.1242/jcs.214072.


MPTAC Determines APP Fragmentation via Sensing Sulfur Amino Acid Catabolism.

Suganuma T, Swanson SK, Gogol M, Garrett TJ, Conkright-Fincham J, Florens L, Washburn MP, Workman JL.

Cell Rep. 2018 Aug 7;24(6):1585-1596. doi: 10.1016/j.celrep.2018.07.013.


Interpretation and Reporting of Coronary Arteries in Transposition of the Great Arteries: Cross-sectional Imaging Perspective.

Swanson SK, Sayyouh MM, Bardo DME, Ghadimi Mahani M, Lu JC, Dorfman AL, Agarwal PP.

J Thorac Imaging. 2018 Jul;33(4):W14-W21. doi: 10.1097/RTI.0000000000000333. Review.


Analysis of RNA-Seq datasets reveals enrichment of tissue-specific splice variants for nuclear envelope proteins.

Capitanchik C, Dixon CR, Swanson SK, Florens L, Kerr ARW, Schirmer EC.

Nucleus. 2018;9(1):410-430. doi: 10.1080/19491034.2018.1469351.


Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis.

Cheng J, Park DE, Berrios C, White EA, Arora R, Yoon R, Branigan T, Xiao T, Westerling T, Federation A, Zeid R, Strober B, Swanson SK, Florens L, Bradner JE, Brown M, Howley PM, Padi M, Washburn MP, DeCaprio JA.

PLoS Pathog. 2017 Oct 13;13(10):e1006668. doi: 10.1371/journal.ppat.1006668. eCollection 2017 Oct.


The human cytoplasmic dynein interactome reveals novel activators of motility.

Redwine WB, DeSantis ME, Hollyer I, Htet ZM, Tran PT, Swanson SK, Florens L, Washburn MP, Reck-Peterson SL.

Elife. 2017 Jul 18;6. pii: e28257. doi: 10.7554/eLife.28257.


Comprehensive Spatial Analysis of the Borrelia burgdorferi Lipoproteome Reveals a Compartmentalization Bias toward the Bacterial Surface.

Dowdell AS, Murphy MD, Azodi C, Swanson SK, Florens L, Chen S, Zückert WR.

J Bacteriol. 2017 Feb 28;199(6). pii: e00658-16. doi: 10.1128/JB.00658-16. Print 2017 Mar 15.


Trio, a Rho Family GEF, Interacts with the Presynaptic Active Zone Proteins Piccolo and Bassoon.

Terry-Lorenzo RT, Torres VI, Wagh D, Galaz J, Swanson SK, Florens L, Washburn MP, Waites CL, Gundelfinger ED, Reimer RJ, Garner CC.

PLoS One. 2016 Dec 1;11(12):e0167535. doi: 10.1371/journal.pone.0167535. eCollection 2016.


Cytoplasmic ATXN7L3B Interferes with Nuclear Functions of the SAGA Deubiquitinase Module.

Li W, Atanassov BS, Lan X, Mohan RD, Swanson SK, Farria AT, Florens L, Washburn MP, Workman JL, Dent SYR.

Mol Cell Biol. 2016 Oct 28;36(22):2855-2866. doi: 10.1128/MCB.00193-16. Print 2016 Nov 15.


HIV-1 and HIV-2 exhibit divergent interactions with HLTF and UNG2 DNA repair proteins.

Hrecka K, Hao C, Shun MC, Kaur S, Swanson SK, Florens L, Washburn MP, Skowronski J.

Proc Natl Acad Sci U S A. 2016 Jul 5;113(27):E3921-30. doi: 10.1073/pnas.1605023113. Epub 2016 Jun 22.


The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition.

Huang F, Saraf A, Florens L, Kusch T, Swanson SK, Szerszen LT, Li G, Dutta A, Washburn MP, Abmayr SM, Workman JL.

Genes Dev. 2016 May 15;30(10):1198-210. doi: 10.1101/gad.271429.115. Epub 2016 May 19.


The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing.

Stegeman R, Spreacker PJ, Swanson SK, Stephenson R, Florens L, Washburn MP, Weake VM.

J Mol Biol. 2016 Sep 11;428(18):3632-49. doi: 10.1016/j.jmb.2016.05.009. Epub 2016 May 13.


Moco biosynthesis and the ATAC acetyltransferase engage translation initiation by inhibiting latent PKR activity.

Suganuma T, Swanson SK, Florens L, Washburn MP, Workman JL.

J Mol Cell Biol. 2016 Feb;8(1):44-50. doi: 10.1093/jmcb/mjv070. Epub 2015 Dec 23.


Analysis of Benign Prostatic Hyperplasia Patients' Perspective Through a Third Party-administered Survey.

Abdul-Muhsin HM, Tyson MD, Andrews PE, Castle EP, Ferrigni RG, Wolter CE, Swanson SK, McLemore RY, Humphreys MR.

Urology. 2016 Feb;88:155-60. doi: 10.1016/j.urology.2015.11.009. Epub 2015 Nov 12.


Serine and SAM Responsive Complex SESAME Regulates Histone Modification Crosstalk by Sensing Cellular Metabolism.

Li S, Swanson SK, Gogol M, Florens L, Washburn MP, Workman JL, Suganuma T.

Mol Cell. 2015 Nov 5;60(3):408-21. doi: 10.1016/j.molcel.2015.09.024. Epub 2015 Oct 29.


Zic2 is an enhancer-binding factor required for embryonic stem cell specification.

Luo Z, Gao X, Lin C, Smith ER, Marshall SA, Swanson SK, Florens L, Washburn MP, Shilatifard A.

Mol Cell. 2015 Feb 19;57(4):685-694. doi: 10.1016/j.molcel.2015.01.007.


Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling.

Herz HM, Morgan M, Gao X, Jackson J, Rickels R, Swanson SK, Florens L, Washburn MP, Eissenberg JC, Shilatifard A.

Science. 2014 Aug 29;345(6200):1065-70. doi: 10.1126/science.1255104.


Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila.

Ryu HW, Lee DH, Florens L, Swanson SK, Washburn MP, Kwon SH.

J Proteomics. 2014 May 6;102:137-47. doi: 10.1016/j.jprot.2014.03.016. Epub 2014 Mar 25.


Marital status and prostate cancer outcomes.

Tyson MD, Andrews PE, Etzioni DA, Ferrigni RG, Humphreys MR, Swanson SK, Castle EK.

Can J Urol. 2013 Apr;20(2):6702-6.


Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains.

Bonner AM, Hughes SE, Chisholm JA, Smith SK, Slaughter BD, Unruh JR, Collins KA, Friederichs JM, Florens L, Swanson SK, Pelot MC, Miller DE, Washburn MP, Jaspersen SL, Hawley RS.

Proc Natl Acad Sci U S A. 2013 Mar 26;110(13):E1222-31. doi: 10.1073/pnas.1301690110. Epub 2013 Mar 11.


Outcome and toxicity for patients treated with intensity modulated radiation therapy for localized prostate cancer.

Vora SA, Wong WW, Schild SE, Ezzell GA, Andrews PE, Ferrigni RG, Swanson SK.

J Urol. 2013 Aug;190(2):521-6. doi: 10.1016/j.juro.2013.02.012. Epub 2013 Feb 13.


The nuclear envelope proteome differs notably between tissues.

Korfali N, Wilkie GS, Swanson SK, Srsen V, de Las Heras J, Batrakou DG, Malik P, Zuleger N, Kerr AR, Florens L, Schirmer EC.

Nucleus. 2012 Nov-Dec;3(6):552-64. doi: 10.4161/nucl.22257. Epub 2012 Sep 18.


Shaggy/glycogen synthase kinase 3β and phosphorylation of Sarah/regulator of calcineurin are essential for completion of Drosophila female meiosis.

Takeo S, Swanson SK, Nandanan K, Nakai Y, Aigaki T, Washburn MP, Florens L, Hawley RS.

Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6382-9. doi: 10.1073/pnas.1120367109. Epub 2012 Mar 15.


Anatomic site-specific disparities in survival outcomes for penile squamous cell carcinoma.

Tyson MD, Etzioni DA, Wisenbaugh ES, Andrews PE, Humphreys MR, Ferrigni RG, Swanson SK, Castle EP.

Urology. 2012 Apr;79(4):804-8. doi: 10.1016/j.urology.2011.12.047. Epub 2012 Mar 3.


A metazoan ATAC acetyltransferase subunit that regulates mitogen-activated protein kinase signaling is related to an ancient molybdopterin synthase component.

Suganuma T, Mushegian A, Swanson SK, Florens L, Washburn MP, Workman JL.

Mol Cell Proteomics. 2012 May;11(5):90-9. doi: 10.1074/mcp.M111.015818. Epub 2012 Feb 18.


Human CCAAT/enhancer-binding protein β interacts with chromatin remodeling complexes of the imitation switch subfamily.

Steinberg XP, Hepp MI, Fernández García Y, Suganuma T, Swanson SK, Washburn M, Workman JL, Gutiérrez JL.

Biochemistry. 2012 Feb 7;51(5):952-62. doi: 10.1021/bi201593q. Epub 2012 Jan 23.


The little elongation complex regulates small nuclear RNA transcription.

Smith ER, Lin C, Garrett AS, Thornton J, Mohaghegh N, Hu D, Jackson J, Saraf A, Swanson SK, Seidel C, Florens L, Washburn MP, Eissenberg JC, Shilatifard A.

Mol Cell. 2011 Dec 23;44(6):954-65. doi: 10.1016/j.molcel.2011.12.008.


Older age does not impact perioperative complications after robot-assisted radical prostatectomy.

Nakamura LY, Nunez RN, Andrews PE, Ferrigni RG, Humphreys MR, Swanson SK, Wolter CE, Castle EP.

J Robot Surg. 2011 Sep;5(3):201-8. doi: 10.1007/s11701-011-0251-1. Epub 2011 Feb 5.


Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation.

Weake VM, Dyer JO, Seidel C, Box A, Swanson SK, Peak A, Florens L, Washburn MP, Abmayr SM, Workman JL.

Genes Dev. 2011 Jul 15;25(14):1499-509. doi: 10.1101/gad.2046211.


Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes.

Lee KK, Sardiu ME, Swanson SK, Gilmore JM, Torok M, Grant PA, Florens L, Workman JL, Washburn MP.

Mol Syst Biol. 2011 Jul 5;7:503. doi: 10.1038/msb.2011.40.


Human mediator subunit MED26 functions as a docking site for transcription elongation factors.

Takahashi H, Parmely TJ, Sato S, Tomomori-Sato C, Banks CA, Kong SE, Szutorisz H, Swanson SK, Martin-Brown S, Washburn MP, Florens L, Seidel CW, Lin C, Smith ER, Shilatifard A, Conaway RC, Conaway JW.

Cell. 2011 Jul 8;146(1):92-104. doi: 10.1016/j.cell.2011.06.005.


Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein.

Hrecka K, Hao C, Gierszewska M, Swanson SK, Kesik-Brodacka M, Srivastava S, Florens L, Washburn MP, Skowronski J.

Nature. 2011 Jun 29;474(7353):658-61. doi: 10.1038/nature10195.


DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly.

Litovchick L, Florens LA, Swanson SK, Washburn MP, DeCaprio JA.

Genes Dev. 2011 Apr 15;25(8):801-13. doi: 10.1101/gad.2034211.


Subunit organization of the human INO80 chromatin remodeling complex: an evolutionarily conserved core complex catalyzes ATP-dependent nucleosome remodeling.

Chen L, Cai Y, Jin J, Florens L, Swanson SK, Washburn MP, Conaway JW, Conaway RC.

J Biol Chem. 2011 Apr 1;286(13):11283-9. doi: 10.1074/jbc.M111.222505. Epub 2011 Feb 8.


Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II.

Kwon SH, Florens L, Swanson SK, Washburn MP, Abmayr SM, Workman JL.

Genes Dev. 2010 Oct 1;24(19):2133-45. doi: 10.1101/gad.1959110. Erratum in: Genes Dev. 2011 Feb 1;25(3):287.


Several novel nuclear envelope transmembrane proteins identified in skeletal muscle have cytoskeletal associations.

Wilkie GS, Korfali N, Swanson SK, Malik P, Srsen V, Batrakou DG, de las Heras J, Zuleger N, Kerr AR, Florens L, Schirmer EC.

Mol Cell Proteomics. 2011 Jan;10(1):M110.003129. doi: 10.1074/mcp.M110.003129. Epub 2010 Sep 27.


Should the patient with positive margins after radical prostatectomy receive adjuvant radiation?

Swanson SK.

J Urol. 2010 Nov;184(5):1837-8. doi: 10.1016/j.juro.2010.08.050. Epub 2010 Sep 17. No abstract available.


The ATAC acetyltransferase complex coordinates MAP kinases to regulate JNK target genes.

Suganuma T, Mushegian A, Swanson SK, Abmayr SM, Florens L, Washburn MP, Workman JL.

Cell. 2010 Sep 3;142(5):726-36. doi: 10.1016/j.cell.2010.07.045.


The leukocyte nuclear envelope proteome varies with cell activation and contains novel transmembrane proteins that affect genome architecture.

Korfali N, Wilkie GS, Swanson SK, Srsen V, Batrakou DG, Fairley EA, Malik P, Zuleger N, Goncharevich A, de Las Heras J, Kelly DA, Kerr AR, Florens L, Schirmer EC.

Mol Cell Proteomics. 2010 Dec;9(12):2571-85. doi: 10.1074/mcp.M110.002915. Epub 2010 Aug 6.


Subunit composition and substrate specificity of a MOF-containing histone acetyltransferase distinct from the male-specific lethal (MSL) complex.

Cai Y, Jin J, Swanson SK, Cole MD, Choi SH, Florens L, Washburn MP, Conaway JW, Conaway RC.

J Biol Chem. 2010 Feb 12;285(7):4268-72. doi: 10.1074/jbc.C109.087981. Epub 2009 Dec 14.


A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression.

Weake VM, Swanson SK, Mushegian A, Florens L, Washburn MP, Abmayr SM, Workman JL.

Genes Dev. 2009 Dec 15;23(24):2818-23. doi: 10.1101/gad.1846409.


Radiation dose escalation for localized prostate cancer: intensity-modulated radiotherapy versus permanent transperineal brachytherapy.

Wong WW, Vora SA, Schild SE, Ezzell GA, Andrews PE, Ferrigni RG, Swanson SK.

Cancer. 2009 Dec 1;115(23):5596-606. doi: 10.1002/cncr.24558.


Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler.

Gottschalk AJ, Timinszky G, Kong SE, Jin J, Cai Y, Swanson SK, Washburn MP, Florens L, Ladurner AG, Conaway JW, Conaway RC.

Proc Natl Acad Sci U S A. 2009 Aug 18;106(33):13770-4. doi: 10.1073/pnas.0906920106. Epub 2009 Aug 6.


Regulation of H3K4 trimethylation via Cps40 (Spp1) of COMPASS is monoubiquitination independent: implication for a Phe/Tyr switch by the catalytic domain of Set1.

Takahashi YH, Lee JS, Swanson SK, Saraf A, Florens L, Washburn MP, Trievel RC, Shilatifard A.

Mol Cell Biol. 2009 Jul;29(13):3478-86. doi: 10.1128/MCB.00013-09. Epub 2009 Apr 27.


Generation and analysis of multidimensional protein identification technology datasets.

Swanson SK, Florens L, Washburn MP.

Methods Mol Biol. 2009;492:1-20. doi: 10.1007/978-1-59745-493-3_1.


Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes.

Lee KK, Swanson SK, Florens L, Washburn MP, Workman JL.

Epigenetics Chromatin. 2009 Feb 18;2(1):2. doi: 10.1186/1756-8935-2-2.


DNA-PKcs-PIDDosome: a nuclear caspase-2-activating complex with role in G2/M checkpoint maintenance.

Shi M, Vivian CJ, Lee KJ, Ge C, Morotomi-Yano K, Manzl C, Bock F, Sato S, Tomomori-Sato C, Zhu R, Haug JS, Swanson SK, Washburn MP, Chen DJ, Chen BP, Villunger A, Florens L, Du C.

Cell. 2009 Feb 6;136(3):508-20. doi: 10.1016/j.cell.2008.12.021. Retraction in: Cell. 2011 Apr 1;145(1):161.


Does a history of previous surgery or radiation to the prostate affect outcomes of robot-assisted radical prostatectomy?

Martin AD, Desai PJ, Nunez RN, Martin GL, Andrews PE, Ferrigni RG, Swanson SK, Pacelli A, Castle EP.

BJU Int. 2009 Jun;103(12):1696-8. doi: 10.1111/j.1464-410X.2008.08276.x. Epub 2008 Dec 23.

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