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Editorial overview: CNS diseases and the microbiome.

Diaz Heijtz R, Swann J.

Curr Opin Pharmacol. 2019 Sep 20. pii: S1471-4892(19)30090-6. doi: 10.1016/j.coph.2019.09.002. [Epub ahead of print] No abstract available.


The Mycotoxin Deoxynivalenol Significantly Alters the Function and Metabolism of Bovine Kidney Epithelial Cells In Vitro.

Bailey JR, Breton J, Panic G, Cogan TA, Bailey M, Swann JR, Lee MRF.

Toxins (Basel). 2019 Sep 20;11(10). pii: E554. doi: 10.3390/toxins11100554.


Small talk: microbial metabolites involved in the signaling from microbiota to brain.

Caspani G, Swann J.

Curr Opin Pharmacol. 2019 Sep 13;48:99-106. doi: 10.1016/j.coph.2019.08.001. [Epub ahead of print] Review.


Tryptophan, glutamine, leucine, and micronutrient supplementation improves environmental enteropathy in Zambian adults: a randomized controlled trial.

Louis-Auguste J, Besa E, Zyambo K, Munkombwe D, Banda R, Banda T, Watson A, Mayneris-Perxachs J, Swann J, Kelly P.

Am J Clin Nutr. 2019 Aug 28. pii: nqz189. doi: 10.1093/ajcn/nqz189. [Epub ahead of print]


Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes.

De Maio N, Shaw LP, Hubbard A, George S, Sanderson ND, Swann J, Wick R, AbuOun M, Stubberfield E, Hoosdally SJ, Crook DW, Peto TEA, Sheppard AE, Bailey MJ, Read DS, Anjum MF, Walker AS, Stoesser N, On Behalf Of The Rehab Consortium.

Microb Genom. 2019 Sep;5(9). doi: 10.1099/mgen.0.000294. Epub 2019 Aug 30.


Batch effect exerts a bigger influence on the rat urinary metabolome and gut microbiota than uraemia: a cautionary tale.

Randall DW, Kieswich J, Swann J, McCafferty K, Thiemermann C, Curtis M, Hoyles L, Yaqoob MM.

Microbiome. 2019 Sep 2;7(1):127. doi: 10.1186/s40168-019-0738-y.


Consumer Safety Considerations of Skin and Oral Microbiome Perturbation.

McBain AJ, O'Neill CA, Amezquita A, Price LJ, Faust K, Tett A, Segata N, Swann JR, Smith AM, Murphy B, Hoptroff M, James G, Reddy Y, Dasgupta A, Ross T, Chapple IL, Wade WG, Fernandez-Piquer J.

Clin Microbiol Rev. 2019 Jul 31;32(4). pii: e00051-19. doi: 10.1128/CMR.00051-19. Print 2019 Sep 18. Review.


A comparison of collision cross section values obtained via travelling wave ion mobility-mass spectrometry and ultra high performance liquid chromatography-ion mobility-mass spectrometry: Application to the characterisation of metabolites in rat urine.

Nye LC, Williams JP, Munjoma NC, Letertre MPM, Coen M, Bouwmeester R, Martens L, Swann JR, Nicholson JK, Plumb RS, McCullagh M, Gethings LA, Lai S, Langridge JI, Vissers JPC, Wilson ID.

J Chromatogr A. 2019 Sep 27;1602:386-396. doi: 10.1016/j.chroma.2019.06.056. Epub 2019 Jun 27.


Proximal Lck Promoter-Driven Cre Function Is Limited in Neonatal and Ineffective in Adult γδ T Cell Development.

Fiala GJ, Schaffer AM, Merches K, Morath A, Swann J, Herr LA, Hils M, Esser C, Minguet S, Schamel WWA.

J Immunol. 2019 Jul 15;203(2):569-579. doi: 10.4049/jimmunol.1701521. Epub 2019 Jun 5.


Randomised controlled trial of fractionated and unfractionated prednisolone regimens for dogs with immune-mediated haemolytic anaemia.

Swann JW, Szladovits B, Threlfall AJ, Garden OA, Chang YM, Church DB, Glanemann B.

Vet Rec. 2019 Jun 22;184(25):771. doi: 10.1136/vr.105104. Epub 2019 May 2.


Small intestinal microbial dysbiosis underlies symptoms associated with functional gastrointestinal disorders.

Saffouri GB, Shields-Cutler RR, Chen J, Yang Y, Lekatz HR, Hale VL, Cho JM, Battaglioli EJ, Bhattarai Y, Thompson KJ, Kalari KK, Behera G, Berry JC, Peters SA, Patel R, Schuetz AN, Faith JJ, Camilleri M, Sonnenburg JL, Farrugia G, Swann JR, Grover M, Knights D, Kashyap PC.

Nat Commun. 2019 May 1;10(1):2012. doi: 10.1038/s41467-019-09964-7.


Chemotherapy-induced cachexia dysregulates hypothalamic and systemic lipoamines and is attenuated by cannabigerol.

Brierley DI, Harman JR, Giallourou N, Leishman E, Roashan AE, Mellows BAD, Bradshaw HB, Swann JR, Patel K, Whalley BJ, Williams CM.

J Cachexia Sarcopenia Muscle. 2019 Aug;10(4):844-859. doi: 10.1002/jcsm.12426. Epub 2019 Apr 29.


The effect varied scanning electron microscopy desiccation techniques has on demineralized dentin.

Sterrett JD, Marks M, Dunlap J, Swann J, Dunn M.

Microsc Res Tech. 2019 Aug;82(8):1249-1255. doi: 10.1002/jemt.23274. Epub 2019 Apr 11.


Obesity and Cage Environment Modulate Metabolism in the Zucker Rat: A Multiple Biological Matrix Approach to Characterizing Metabolic Phenomena.

Lees HJ, Swann JR, Poucher S, Holmes E, Wilson ID, Nicholson JK.

J Proteome Res. 2019 May 3;18(5):2160-2174. doi: 10.1021/acs.jproteome.9b00040. Epub 2019 Apr 18.


Ultrahigh-Performance Liquid Chromatography Tandem Mass Spectrometry with Electrospray Ionization Quantification of Tryptophan Metabolites and Markers of Gut Health in Serum and Plasma-Application to Clinical and Epidemiology Cohorts.

Whiley L, Nye LC, Grant I, Andreas N, Chappell KE, Sarafian MH, Misra R, Plumb RS, Lewis MR, Nicholson JK, Holmes E, Swann JR, Wilson ID.

Anal Chem. 2019 Apr 16;91(8):5207-5216. doi: 10.1021/acs.analchem.8b05884. Epub 2019 Mar 25.


ACVIM consensus statement on the treatment of immune-mediated hemolytic anemia in dogs.

Swann JW, Garden OA, Fellman CL, Glanemann B, Goggs R, LeVine DN, Mackin AJ, Whitley NT.

J Vet Intern Med. 2019 May;33(3):1141-1172. doi: 10.1111/jvim.15463. Epub 2019 Mar 7.


Antigen-presenting ILC3 regulate T cell-dependent IgA responses to colonic mucosal bacteria.

Melo-Gonzalez F, Kammoun H, Evren E, Dutton EE, Papadopoulou M, Bradford BM, Tanes C, Fardus-Reid F, Swann JR, Bittinger K, Mabbott NA, Vallance BA, Willinger T, Withers DR, Hepworth MR.

J Exp Med. 2019 Apr 1;216(4):728-742. doi: 10.1084/jem.20180871. Epub 2019 Feb 27.


ACVIM consensus statement on the diagnosis of immune-mediated hemolytic anemia in dogs and cats.

Garden OA, Kidd L, Mexas AM, Chang YM, Jeffery U, Blois SL, Fogle JE, MacNeill AL, Lubas G, Birkenheuer A, Buoncompagni S, Dandrieux JRS, Di Loria A, Fellman CL, Glanemann B, Goggs R, Granick JL, LeVine DN, Sharp CR, Smith-Carr S, Swann JW, Szladovits B.

J Vet Intern Med. 2019 Mar;33(2):313-334. doi: 10.1111/jvim.15441. Epub 2019 Feb 26.


Health Outcomes, Pathogenesis and Epidemiology of Severe Acute Malnutrition (HOPE-SAM): rationale and methods of a longitudinal observational study.

Bwakura-Dangarembizi M, Amadi B, Bourke CD, Robertson RC, Mwapenya B, Chandwe K, Kapoma C, Chifunda K, Majo F, Ngosa D, Chakara P, Chulu N, Masimba F, Mapurisa I, Besa E, Mutasa K, Mwakamui S, Runodamoto T, Humphrey JH, Ntozini R, Wells JCK, Manges AR, Swann JR, Walker AS, Nathoo KJ, Kelly P, Prendergast AJ; HOPE-SAM study team.

BMJ Open. 2019 Feb 1;9(1):e023077. doi: 10.1136/bmjopen-2018-023077.


Chronic sleep restriction in the rotenone Parkinson's disease model in rats reveals peripheral early-phase biomarkers.

Fagotti J, Targa ADS, Rodrigues LS, Noseda ACD, Dorieux FWC, Scarante FF, Ilkiw JL, Louzada FM, Chowdhury NR, van der Veen DR, Middleton B, Pennings JLA, Swann JR, Skene DJ, Lima MMS.

Sci Rep. 2019 Feb 13;9(1):1898. doi: 10.1038/s41598-018-37657-6.


A murine model of diarrhea, growth impairment and metabolic disturbances with Shigella flexneri infection and the role of zinc deficiency.

Q S Medeiros PH, Ledwaba SE, Bolick DT, Giallourou N, Yum LK, Costa DVS, Oriá RB, Barry EM, Swann JR, Lima AÂM, Agaisse H, Guerrant RL.

Gut Microbes. 2019;10(5):615-630. doi: 10.1080/19490976.2018.1564430. Epub 2019 Feb 3.


Dual RNA-seq identifies human mucosal immunity protein Mucin-13 as a hallmark of Plasmodium exoerythrocytic infection.

LaMonte GM, Orjuela-Sanchez P, Calla J, Wang LT, Li S, Swann J, Cowell AN, Zou BY, Abdel-Haleem Mohamed AM, Villa Galarce ZH, Moreno M, Tong Rios C, Vinetz JM, Lewis N, Winzeler EA.

Nat Commun. 2019 Jan 30;10(1):488. doi: 10.1038/s41467-019-08349-0.


Looking after interns and residents.

Swann J, Elwood C, Marr C.

Vet Rec. 2019 Jan 26;184(4):127. doi: 10.1136/vr.l336. No abstract available.


Risk Factors for Seizures Among Young Children Monitored With Continuous Electroencephalography in Intensive Care Unit: A Retrospective Study.

Vlachy J, Jo M, Li Q, Ayer T, Keskinocak P, Swann J, Olson L, Vats A.

Front Pediatr. 2018 Oct 15;6:303. doi: 10.3389/fped.2018.00303. eCollection 2018.


Modelling the role of microbial p-cresol in colorectal genotoxicity.

Al Hinai EA, Kullamethee P, Rowland IR, Swann J, Walton GE, Commane DM.

Gut Microbes. 2019;10(3):398-411. doi: 10.1080/19490976.2018.1534514. Epub 2018 Oct 25.


Value of inventory information in allocating a limited supply of influenza vaccine during a pandemic.

Li Z, Swann JL, Keskinocak P.

PLoS One. 2018 Oct 25;13(10):e0206293. doi: 10.1371/journal.pone.0206293. eCollection 2018.


Attenuation of oxidative stress-induced lesions in skeletal muscle in a mouse model of obesity-independent hyperlipidaemia and atherosclerosis through the inhibition of Nox2 activity.

Sfyri PP, Yuldasheva NY, Tzimou A, Giallourou N, Crispi V, Aburima A, Beltran-Alvarez P, Patel K, Mougios V, Swann JR, Kearney MT, Matsakas A.

Free Radic Biol Med. 2018 Dec;129:504-519. doi: 10.1016/j.freeradbiomed.2018.10.422. Epub 2018 Oct 17.


Burn injury outcome differences in Native Americans.

Swann JA, Matthews MR, Bay C, Foster KN.

Burns. 2019 Mar;45(2):494-501. doi: 10.1016/j.burns.2018.09.018. Epub 2018 Oct 16.


Comprehensive inventory of true flies (Diptera) at a tropical site.

Brown BV, Borkent A, Adler PH, Amorim DS, Barber K, Bickel D, Boucher S, Brooks SE, Burger J, Burington ZL, Capellari RS, Costa DNR, Cumming JM, Curler G, Dick CW, Epler JH, Fisher E, Gaimari SD, Gelhaus J, Grimaldi DA, Hash J, Hauser M, Hippa H, Ibáñez-Bernal S, Jaschhof M, Kameneva EP, Kerr PH, Korneyev V, Korytkowski CA, Kung GA, Kvifte GM, Lonsdale O, Marshall SA, Mathis W, Michelsen V, Naglis S, Norrbom AL, Paiero S, Pape T, Pereira-Colavite A, Pollet M, Rochefort S, Rung A, Runyon JB, Savage J, Silva VC, Sinclair BJ, Skevington JH, Stireman Iii JO, Swann J, Thompson FC, Vilkamaa P, Wheeler T, Whitworth T, Wong M, Wood DM, Woodley N, Yau T, Zavortink TJ, Zumbado MA.

Commun Biol. 2018 Mar 22;1:21. doi: 10.1038/s42003-018-0022-x. eCollection 2018.


Real-time analysis of nanopore-based metagenomic sequencing from infected orthopaedic devices.

Sanderson ND, Street TL, Foster D, Swann J, Atkins BL, Brent AJ, McNally MA, Oakley S, Taylor A, Peto TEA, Crook DW, Eyre DW.

BMC Genomics. 2018 Sep 27;19(1):714. doi: 10.1186/s12864-018-5094-y.


Para-cresol production by Clostridium difficile affects microbial diversity and membrane integrity of Gram-negative bacteria.

Passmore IJ, Letertre MPM, Preston MD, Bianconi I, Harrison MA, Nasher F, Kaur H, Hong HA, Baines SD, Cutting SM, Swann JR, Wren BW, Dawson LF.

PLoS Pathog. 2018 Sep 12;14(9):e1007191. doi: 10.1371/journal.ppat.1007191. eCollection 2018 Sep.


Inferring Metabolic Mechanisms of Interaction within a Defined Gut Microbiota.

Medlock GL, Carey MA, McDuffie DG, Mundy MB, Giallourou N, Swann JR, Kolling GL, Papin JA.

Cell Syst. 2018 Sep 26;7(3):245-257.e7. doi: 10.1016/j.cels.2018.08.003. Epub 2018 Sep 5.


Fecal microbiota and bile acid interactions with systemic and adipose tissue metabolism in diet-induced weight loss of obese postmenopausal women.

Alemán JO, Bokulich NA, Swann JR, Walker JM, De Rosa JC, Battaglia T, Costabile A, Pechlivanis A, Liang Y, Breslow JL, Blaser MJ, Holt PR.

J Transl Med. 2018 Sep 3;16(1):244. doi: 10.1186/s12967-018-1619-z.


Metabolic targets of watercress and PEITC in MCF-7 and MCF-10A cells explain differential sensitisation responses to ionising radiation.

Giallourou NS, Rowland IR, Rothwell SD, Packham G, Commane DM, Swann JR.

Eur J Nutr. 2019 Sep;58(6):2377-2391. doi: 10.1007/s00394-018-1789-8. Epub 2018 Jul 31.


Fundamental parameters of the developing thymic epithelium in the mouse.

Hirakawa M, Nagakubo D, Kanzler B, Avilov S, Krauth B, Happe C, Swann JB, Nusser A, Boehm T.

Sci Rep. 2018 Jul 23;8(1):11095. doi: 10.1038/s41598-018-29460-0.


Early Life Interventions for Childhood Growth and Development in Tanzania (ELICIT): a protocol for a randomised factorial, double-blind, placebo-controlled trial of azithromycin, nitazoxanide and nicotinamide.

DeBoer MD, Platts-Mills JA, Scharf RJ, McDermid JM, Wanjuhi AW, Gratz J, Svensen E, Swann JR, Donowitz JR, Jatosh S, Houpt ER, Mduma E.

BMJ Open. 2018 Jul 7;8(7):e021817. doi: 10.1136/bmjopen-2018-021817.


In Vitro Modeling of Bile Acid Processing by the Human Fecal Microbiota.

Martin G, Kolida S, Marchesi JR, Want E, Sidaway JE, Swann JR.

Front Microbiol. 2018 Jun 5;9:1153. doi: 10.3389/fmicb.2018.01153. eCollection 2018.


A novel mouse model of Campylobacter jejuni enteropathy and diarrhea.

Giallourou N, Medlock GL, Bolick DT, Medeiros PH, Ledwaba SE, Kolling GL, Tung K, Guerry P, Swann JR, Guerrant RL.

PLoS Pathog. 2018 May 23;14(3):e1007083. doi: 10.1371/journal.ppat.1007083. eCollection 2018 Mar.


BDNF infusion into the MPN mag is sufficient to restore copulatory behavior in the castrated Syrian hamster.

Brague JC, Lenchur CN, Hayden JM, Davidson RH, Corrigan K, Santini GT, Swann JM.

Horm Behav. 2018 Jun;102:69-75. doi: 10.1016/j.yhbeh.2018.05.006. Epub 2018 May 12.


Characterizing the Biochemical Response to Schistosoma mansoni Infection and Treatment with Praziquantel in Preschool and School Aged Children.

Panic G, Coulibaly JT, Harvey N, Keiser J, Swann J.

J Proteome Res. 2018 Jun 1;17(6):2028-2033. doi: 10.1021/acs.jproteome.7b00910. Epub 2018 May 21.


Remarkable fly (Diptera) diversity in a patch of Costa Rican cloud forest: Why inventory is a vital science.

Borkent A, Brown BV, Adler PH, Amorim DS, Barber K, Bickel D, Boucher S, Brooks SE, Burger J, Burington ZL, Capellari RS, Costa DNR, Cumming JM, Curler G, Dick CW, Epler JH, Fisher E, Gaimari SD, Gelhaus J, Grimaldi DA, Hash J, Hauser M, Hippa H, IbÁÑez-Bernal S, Jaschhof M, Kameneva EP, Kerr PH, Korneyev V, Korytkowski CA, Kung GA, Kvifte GM, Lonsdale O, Marshall SA, Mathis WN, Michelsen V, Naglis S, Norrbom AL, Paiero S, Pape T, Pereira-Colavite A, Pollet M, Rochefort S, Rung A, Runyon JB, Savage J, Silva VC, Sinclair BJ, Skevington JH, Stireman JOI, Swann J, Vilkamaa P, Wheeler T, Whitworth T, Wong M, Wood DM, Woodley N, Yau T, Zavortink TJ, Zumbado MA.

Zootaxa. 2018 Mar 27;4402(1):53-90. doi: 10.11646/zootaxa.4402.1.3.


Metabolic phenotyping of malnutrition during the first 1000 days of life.

Mayneris-Perxachs J, Swann JR.

Eur J Nutr. 2019 Apr;58(3):909-930. doi: 10.1007/s00394-018-1679-0. Epub 2018 Apr 11. Review.


Characterizing the metabolic phenotype of intestinal villus blunting in Zambian children with severe acute malnutrition and persistent diarrhea.

Farràs M, Chandwe K, Mayneris-Perxachs J, Amadi B, Louis-Auguste J, Besa E, Zyambo K, Guerrant R, Kelly P, Swann JR.

PLoS One. 2018 Mar 2;13(3):e0192092. doi: 10.1371/journal.pone.0192092. eCollection 2018. Erratum in: PLoS One. 2018 May 1;13(5):e0196934.


Exploration of the Fecal Microbiota and Biomarker Discovery in Equine Grass Sickness.

Leng J, Proudman C, Darby A, Blow F, Townsend N, Miller A, Swann J.

J Proteome Res. 2018 Mar 2;17(3):1120-1128. doi: 10.1021/acs.jproteome.7b00784. Epub 2018 Feb 2.


Does distance to a cystic fibrosis center impact health outcomes?

Johnson B, Ngueyep R, Schechter MS, Serban N, Swann J.

Pediatr Pulmonol. 2018 Mar;53(3):284-292. doi: 10.1002/ppul.23940. Epub 2018 Jan 23.


Speech and language delay in children: a case to learn from.

Wooles N, Swann J, Hoskison E.

Br J Gen Pract. 2018 Jan;68(666):47-48. doi: 10.3399/bjgp17X694373. No abstract available.


An in vivo assessment of the cholesterol-lowering efficacy of Lactobacillus plantarum ECGC 13110402 in normal to mildly hypercholesterolaemic adults.

Costabile A, Buttarazzi I, Kolida S, Quercia S, Baldini J, Swann JR, Brigidi P, Gibson GR.

PLoS One. 2017 Dec 11;12(12):e0187964. doi: 10.1371/journal.pone.0187964. eCollection 2017.


TrkB is necessary for male copulatory behavior in the Syrian Hamster (Mesocricetus auratus).

Brague JC, Zinn CR, Granot DY, Feathers CT, Swann JM.

Horm Behav. 2018 Jan;97:162-169. doi: 10.1016/j.yhbeh.2017.10.016. Epub 2017 Dec 19.


Systematic review of the effects of the intestinal microbiota on selected nutrients and non-nutrients.

Shortt C, Hasselwander O, Meynier A, Nauta A, Fernández EN, Putz P, Rowland I, Swann J, Türk J, Vermeiren J, Antoine JM.

Eur J Nutr. 2018 Feb;57(1):25-49. doi: 10.1007/s00394-017-1546-4. Epub 2017 Oct 30. Review.

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