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Items: 50

1.

Transition between fermentation and respiration determines history-dependent behavior in fluctuating carbon sources.

Cerulus B, Jariani A, Perez-Samper G, Vermeersch L, Pietsch JM, Crane MM, New AM, Gallone B, Roncoroni M, Dzialo MC, Govers SK, Hendrickx JO, Galle E, Coomans M, Berden P, Verbandt S, Swain PS, Verstrepen KJ.

Elife. 2018 Oct 9;7. pii: e39234. doi: 10.7554/eLife.39234.

2.

Effect of Supplementation of Nano Zinc Oxide on Nutrient Retention, Organ and Serum Minerals Profile, and Hepatic Metallothionein Gene Expression in Wister Albino Rats.

Swain PS, Rao SBN, Rajendran D, Pal D, Mondal S, Selvaraju S.

Biol Trace Elem Res. 2019 Jul;190(1):76-86. doi: 10.1007/s12011-018-1517-5. Epub 2018 Sep 15.

PMID:
30220070
3.

Distributed and dynamic intracellular organization of extracellular information.

Granados AA, Pietsch JMJ, Cepeda-Humerez SA, Farquhar IL, Tkačik G, Swain PS.

Proc Natl Acad Sci U S A. 2018 Jun 5;115(23):6088-6093. doi: 10.1073/pnas.1716659115. Epub 2018 May 21.

4.

A new method for post-translationally labeling proteins in live cells for fluorescence imaging and tracking.

Hinrichsen M, Lenz M, Edwards JM, Miller OK, Mochrie SGJ, Swain PS, Schwarz-Linek U, Regan L.

Protein Eng Des Sel. 2017 Dec 1;30(12):771-780. doi: 10.1093/protein/gzx059.

PMID:
29228311
5.

Morphologically constrained and data informed cell segmentation of budding yeast.

Bakker E, Swain PS, Crane MM.

Bioinformatics. 2018 Jan 1;34(1):88-96. doi: 10.1093/bioinformatics/btx550.

6.

Predicting metabolic adaptation from networks of mutational paths.

Josephides C, Swain PS.

Nat Commun. 2017 Sep 25;8(1):685. doi: 10.1038/s41467-017-00828-6.

7.

Distributing tasks via multiple input pathways increases cellular survival in stress.

Granados AA, Crane MM, Montano-Gutierrez LF, Tanaka RJ, Voliotis M, Swain PS.

Elife. 2017 May 17;6. pii: e21415. doi: 10.7554/eLife.21415.

8.

General calibration of microbial growth in microplate readers.

Stevenson K, McVey AF, Clark IBN, Swain PS, Pilizota T.

Sci Rep. 2016 Dec 13;6:38828. doi: 10.1038/srep38828.

9.

Inferring time derivatives including cell growth rates using Gaussian processes.

Swain PS, Stevenson K, Leary A, Montano-Gutierrez LF, Clark IB, Vogel J, Pilizota T.

Nat Commun. 2016 Dec 12;7:13766. doi: 10.1038/ncomms13766.

11.

Nano zinc, an alternative to conventional zinc as animal feed supplement: A review.

Swain PS, Rao SBN, Rajendran D, Dominic G, Selvaraju S.

Anim Nutr. 2016 Sep;2(3):134-141. doi: 10.1016/j.aninu.2016.06.003. Epub 2016 Jun 25. Review.

12.

Preparation and effects of nano mineral particle feeding in livestock: A review.

Swain PS, Rajendran D, Rao SB, Dominic G.

Vet World. 2015 Jul;8(7):888-91. doi: 10.14202/vetworld.2015.888-891. Epub 2015 Jul 21.

13.

BioJazz: in silico evolution of cellular networks with unbounded complexity using rule-based modeling.

Feng S, Ollivier JF, Swain PS, Soyer OS.

Nucleic Acids Res. 2015 Oct 30;43(19):e123. doi: 10.1093/nar/gkv595. Epub 2015 Jun 22.

14.

A geometric analysis of fast-slow models for stochastic gene expression.

Popović N, Marr C, Swain PS.

J Math Biol. 2016 Jan;72(1-2):87-122. doi: 10.1007/s00285-015-0876-1. Epub 2015 Apr 2.

PMID:
25833185
15.

Mechanistic links between cellular trade-offs, gene expression, and growth.

Weiße AY, Oyarzún DA, Danos V, Swain PS.

Proc Natl Acad Sci U S A. 2015 Mar 3;112(9):E1038-47. doi: 10.1073/pnas.1416533112. Epub 2015 Feb 18.

16.

A microfluidic system for studying ageing and dynamic single-cell responses in budding yeast.

Crane MM, Clark IB, Bakker E, Smith S, Swain PS.

PLoS One. 2014 Jun 20;9(6):e100042. doi: 10.1371/journal.pone.0100042. eCollection 2014.

17.

Environmental sensing, information transfer, and cellular decision-making.

Bowsher CG, Swain PS.

Curr Opin Biotechnol. 2014 Aug;28:149-55. doi: 10.1016/j.copbio.2014.04.010. Epub 2014 May 19. Review.

PMID:
24846821
18.

Unmixing of fluorescence spectra to resolve quantitative time-series measurements of gene expression in plate readers.

Lichten CA, White R, Clark IB, Swain PS.

BMC Biotechnol. 2014 Feb 3;14:11. doi: 10.1186/1472-6750-14-11.

19.

Ultrasensitivity in phosphorylation-dephosphorylation cycles with little substrate.

Martins BM, Swain PS.

PLoS Comput Biol. 2013;9(8):e1003175. doi: 10.1371/journal.pcbi.1003175. Epub 2013 Aug 8.

20.

Systems and synthetic biology underpinning biotechnology.

Soyer OS, Swain PS.

Curr Opin Biotechnol. 2013 Aug;24(4):735-6. doi: 10.1016/j.copbio.2013.06.002. Epub 2013 Jun 27. No abstract available.

PMID:
23810372
21.

The fidelity of dynamic signaling by noisy biomolecular networks.

Bowsher CG, Voliotis M, Swain PS.

PLoS Comput Biol. 2013;9(3):e1002965. doi: 10.1371/journal.pcbi.1002965. Epub 2013 Mar 28.

22.

Stochastic branching-diffusion models for gene expression.

Cottrell D, Swain PS, Tupper PF.

Proc Natl Acad Sci U S A. 2012 Jun 19;109(25):9699-704. doi: 10.1073/pnas.1201103109. Epub 2012 Jun 1.

23.

Identifying sources of variation and the flow of information in biochemical networks.

Bowsher CG, Swain PS.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):E1320-8. doi: 10.1073/pnas.1119407109. Epub 2012 Apr 23.

24.

Measuring single-cell gene expression dynamics in bacteria using fluorescence time-lapse microscopy.

Young JW, Locke JC, Altinok A, Rosenfeld N, Bacarian T, Swain PS, Mjolsness E, Elowitz MB.

Nat Protoc. 2011 Dec 15;7(1):80-8. doi: 10.1038/nprot.2011.432.

25.

Trade-offs and constraints in allosteric sensing.

Martins BM, Swain PS.

PLoS Comput Biol. 2011 Nov;7(11):e1002261. doi: 10.1371/journal.pcbi.1002261. Epub 2011 Nov 3.

26.

A Bayesian method for inferring quantitative information from FRET data.

Lichten CA, Swain PS.

BMC Biophys. 2011 May 9;4:10. doi: 10.1186/2046-1682-4-10.

27.

Scalable rule-based modelling of allosteric proteins and biochemical networks.

Ollivier JF, Shahrezaei V, Swain PS.

PLoS Comput Biol. 2010 Nov 4;6(11):e1000975. doi: 10.1371/journal.pcbi.1000975.

28.

The scaffold protein Ste5 directly controls a switch-like mating decision in yeast.

Malleshaiah MK, Shahrezaei V, Swain PS, Michnick SW.

Nature. 2010 May 6;465(7294):101-5. doi: 10.1038/nature08946. Epub 2010 Apr 18.

PMID:
20400943
29.

Strategies for cellular decision-making.

Perkins TJ, Swain PS.

Mol Syst Biol. 2009;5:326. doi: 10.1038/msb.2009.83. Epub 2009 Nov 17. Review.

30.

Cross-talk between signaling pathways can generate robust oscillations in calcium and cAMP.

Siso-Nadal F, Fox JJ, Laporte SA, Hébert TE, Swain PS.

PLoS One. 2009 Oct 21;4(10):e7189. doi: 10.1371/journal.pone.0007189.

31.

Analytical distributions for stochastic gene expression.

Shahrezaei V, Swain PS.

Proc Natl Acad Sci U S A. 2008 Nov 11;105(45):17256-61. doi: 10.1073/pnas.0803850105. Epub 2008 Nov 6.

32.

The stochastic nature of biochemical networks.

Shahrezaei V, Swain PS.

Curr Opin Biotechnol. 2008 Aug;19(4):369-74. doi: 10.1016/j.copbio.2008.06.011. Epub 2008 Aug 9. Review.

PMID:
18662776
33.

Colored extrinsic fluctuations and stochastic gene expression.

Shahrezaei V, Ollivier JF, Swain PS.

Mol Syst Biol. 2008;4:196. doi: 10.1038/msb.2008.31. Epub 2008 May 6.

34.

Accurate prediction of gene feedback circuit behavior from component properties.

Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB.

Mol Syst Biol. 2007;3:143. Epub 2007 Nov 13.

35.

Inferring the lifetime of endosomal protein complexes by fluorescence recovery after photobleaching.

Gousseva V, Simaan M, Laporte SA, Swain PS.

Biophys J. 2008 Jan 15;94(2):679-87. Epub 2007 Sep 7.

36.

Facile: a command-line network compiler for systems biology.

Siso-Nadal F, Ollivier JF, Swain PS.

BMC Syst Biol. 2007 Aug 3;1:36.

37.

Noisy information processing through transcriptional regulation.

Libby E, Perkins TJ, Swain PS.

Proc Natl Acad Sci U S A. 2007 Apr 24;104(17):7151-6. Epub 2007 Apr 9.

38.
39.

Noise in genetic and neural networks.

Swain PS, Longtin A.

Chaos. 2006 Jun;16(2):026101.

PMID:
16822033
40.

A fluctuation method to quantify in vivo fluorescence data.

Rosenfeld N, Perkins TJ, Alon U, Elowitz MB, Swain PS.

Biophys J. 2006 Jul 15;91(2):759-66. Epub 2006 Apr 28.

41.

Tracing the sources of cellular variation.

Ramanathan S, Swain PS.

Dev Cell. 2005 Nov;9(5):576-8. Review.

42.

Gene regulation at the single-cell level.

Rosenfeld N, Young JW, Alon U, Swain PS, Elowitz MB.

Science. 2005 Mar 25;307(5717):1962-5.

43.
44.

Intrinsic and extrinsic contributions to stochasticity in gene expression.

Swain PS, Elowitz MB, Siggia ED.

Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12795-800. Epub 2002 Sep 17.

45.

Stochastic gene expression in a single cell.

Elowitz MB, Levine AJ, Siggia ED, Swain PS.

Science. 2002 Aug 16;297(5584):1183-6.

46.

The role of proofreading in signal transduction specificity.

Swain PS, Siggia ED.

Biophys J. 2002 Jun;82(6):2928-33.

47.

Supported membranes on chemically structured and rough surfaces.

Swain PS, Andelman D.

Phys Rev E Stat Nonlin Soft Matter Phys. 2001 May;63(5 Pt 1):051911. Epub 2001 Apr 25.

PMID:
11414937
48.

Put head and heart into your CP (compliance program).

Swain PS.

Hosp Peer Rev. 1998 Mar;23(3):49-50. No abstract available.

PMID:
10177593
49.

Coupled fluctuations near critical wetting.

Parry AO, Boulter CJ, Swain PS.

Phys Rev E Stat Phys Plasmas Fluids Relat Interdiscip Topics. 1995 Dec;52(6):R5768-R5771. No abstract available.

PMID:
9964227
50.

Quality assurance and quality improvement programs.

Swain PS.

J Nurs Care Qual. 1993 Apr;7(3):82-3. No abstract available.

PMID:
8457706

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