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Items: 1 to 50 of 321

1.

Spatiotemporal constraints on optogenetic inactivation in cortical circuits.

Li N, Chen S, Guo ZV, Chen H, Huo Y, Inagaki HK, Chen G, Davis C, Hansel D, Guo C, Svoboda K.

Elife. 2019 Nov 18;8. pii: e48622. doi: 10.7554/eLife.48622.

2.

Functional clustering of dendritic activity during decision-making.

Kerlin A, Boaz M, Flickinger D, MacLennan BJ, Dean MB, Davis C, Spruston N, Svoboda K.

Elife. 2019 Oct 30;8. pii: e46966. doi: 10.7554/eLife.46966.

3.

Doing the locomotion: Insights and potential pitfalls associated with using locomotor activity as a readout of the circadian rhythm in larval zebrafish.

Wolter ME, Svoboda KR.

J Neurosci Methods. 2019 Oct 18:108465. doi: 10.1016/j.jneumeth.2019.108465. [Epub ahead of print]

PMID:
31634493
4.

Extracellular Matrix in Secondary Palate Development.

Logan SM, Ruest LB, Benson MD, Svoboda KKH.

Anat Rec (Hoboken). 2019 Sep 12. doi: 10.1002/ar.24263. [Epub ahead of print]

PMID:
31513730
5.

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.

Winnubst J, Bas E, Ferreira TA, Wu Z, Economo MN, Edson P, Arthur BJ, Bruns C, Rokicki K, Schauder D, Olbris DJ, Murphy SD, Ackerman DG, Arshadi C, Baldwin P, Blake R, Elsayed A, Hasan M, Ramirez D, Dos Santos B, Weldon M, Zafar A, Dudman JT, Gerfen CR, Hantman AW, Korff W, Sternson SM, Spruston N, Svoboda K, Chandrashekar J.

Cell. 2019 Sep 19;179(1):268-281.e13. doi: 10.1016/j.cell.2019.07.042. Epub 2019 Sep 5.

PMID:
31495573
6.

Recruitment of GABAergic Interneurons in the Barrel Cortex during Active Tactile Behavior.

Yu J, Hu H, Agmon A, Svoboda K.

Neuron. 2019 Oct 23;104(2):412-427.e4. doi: 10.1016/j.neuron.2019.07.027. Epub 2019 Aug 26.

PMID:
31466734
7.

Author Correction: Kilohertz frame-rate two-photon tomography.

Kazemipour A, Novak O, Flickinger D, Marvin JS, Abdelfattah AS, King J, Borden PM, Kim JJ, Al-Abdullatif SH, Deal PE, Miller EW, Schreiter ER, Druckmann S, Svoboda K, Looger LL, Podgorski K.

Nat Methods. 2019 Sep;16(9):932. doi: 10.1038/s41592-019-0545-1.

PMID:
31388143
8.

Response to "Fallacies of Mice Experiments".

Gao Z, Thomas AM, Economo MN, Abrego AM, Svoboda K, De Zeeuw CI, Li N.

Neuroinformatics. 2019 Oct;17(4):475-478. doi: 10.1007/s12021-019-09433-y.

PMID:
31377994
9.

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.

Abdelfattah AS, Kawashima T, Singh A, Novak O, Liu H, Shuai Y, Huang YC, Campagnola L, Seeman SC, Yu J, Zheng J, Grimm JB, Patel R, Friedrich J, Mensh BD, Paninski L, Macklin JJ, Murphy GJ, Podgorski K, Lin BJ, Chen TW, Turner GC, Liu Z, Koyama M, Svoboda K, Ahrens MB, Lavis LD, Schreiter ER.

Science. 2019 Aug 16;365(6454):699-704. doi: 10.1126/science.aav6416. Epub 2019 Aug 1.

PMID:
31371562
10.

Kilohertz frame-rate two-photon tomography.

Kazemipour A, Novak O, Flickinger D, Marvin JS, Abdelfattah AS, King J, Borden PM, Kim JJ, Al-Abdullatif SH, Deal PE, Miller EW, Schreiter ER, Druckmann S, Svoboda K, Looger LL, Podgorski K.

Nat Methods. 2019 Aug;16(8):778-786. doi: 10.1038/s41592-019-0493-9. Epub 2019 Jul 29. Erratum in: Nat Methods. 2019 Sep;16(9):932.

PMID:
31363222
11.

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.

Dana H, Sun Y, Mohar B, Hulse BK, Kerlin AM, Hasseman JP, Tsegaye G, Tsang A, Wong A, Patel R, Macklin JJ, Chen Y, Konnerth A, Jayaraman V, Looger LL, Schreiter ER, Svoboda K, Kim DS.

Nat Methods. 2019 Jul;16(7):649-657. doi: 10.1038/s41592-019-0435-6. Epub 2019 Jun 17.

PMID:
31209382
12.

Prediction of Choice from Competing Mechanosensory and Choice-Memory Cues during Active Tactile Decision Making.

Campagner D, Evans MH, Chlebikova K, Colins-Rodriguez A, Loft MSE, Fox S, Pettifer D, Humphries MD, Svoboda K, Petersen RS.

J Neurosci. 2019 May 15;39(20):3921-3933. doi: 10.1523/JNEUROSCI.2217-18.2019. Epub 2019 Mar 8.

13.

Expression of Collagen Types I, II, IX, and X in the Mineralizing Turkey Gastrocnemius Tendon.

Taylor RW, Mitchell GK, Andrade JL, Svoboda KK.

Anat Rec (Hoboken). 2019 Feb 15. doi: 10.1002/ar.24091. [Epub ahead of print]

PMID:
30768858
14.

Discrete attractor dynamics underlies persistent activity in the frontal cortex.

Inagaki HK, Fontolan L, Romani S, Svoboda K.

Nature. 2019 Feb;566(7743):212-217. doi: 10.1038/s41586-019-0919-7. Epub 2019 Feb 6.

PMID:
30728503
15.

An orderly single-trial organization of population dynamics in premotor cortex predicts behavioral variability.

Wei Z, Inagaki H, Li N, Svoboda K, Druckmann S.

Nat Commun. 2019 Jan 15;10(1):216. doi: 10.1038/s41467-018-08141-6.

16.

Cell polarization: From epithelial cells to odontoblasts.

Chang B, Svoboda KKH, Liu X.

Eur J Cell Biol. 2019 Jan;98(1):1-11. doi: 10.1016/j.ejcb.2018.11.003. Epub 2018 Nov 17. Review.

PMID:
30473389
17.

Establishment of a murine culture system for modeling the temporal progression of cranial and trunk neural crest cell differentiation.

Replogle MR, Sreevidya VS, Lee VM, Laiosa MD, Svoboda KR, Udvadia AJ.

Dis Model Mech. 2018 Dec 12;11(12). pii: dmm035097. doi: 10.1242/dmm.035097.

18.

Distinct descending motor cortex pathways and their roles in movement.

Economo MN, Viswanathan S, Tasic B, Bas E, Winnubst J, Menon V, Graybuck LT, Nguyen TN, Smith KA, Yao Z, Wang L, Gerfen CR, Chandrashekar J, Zeng H, Looger LL, Svoboda K.

Nature. 2018 Nov;563(7729):79-84. doi: 10.1038/s41586-018-0642-9. Epub 2018 Oct 31.

PMID:
30382200
19.

Shared and distinct transcriptomic cell types across neocortical areas.

Tasic B, Yao Z, Graybuck LT, Smith KA, Nguyen TN, Bertagnolli D, Goldy J, Garren E, Economo MN, Viswanathan S, Penn O, Bakken T, Menon V, Miller J, Fong O, Hirokawa KE, Lathia K, Rimorin C, Tieu M, Larsen R, Casper T, Barkan E, Kroll M, Parry S, Shapovalova NV, Hirschstein D, Pendergraft J, Sullivan HA, Kim TK, Szafer A, Dee N, Groblewski P, Wickersham I, Cetin A, Harris JA, Levi BP, Sunkin SM, Madisen L, Daigle TL, Looger L, Bernard A, Phillips J, Lein E, Hawrylycz M, Svoboda K, Jones AR, Koch C, Zeng H.

Nature. 2018 Nov;563(7729):72-78. doi: 10.1038/s41586-018-0654-5. Epub 2018 Oct 31.

20.

A cortico-cerebellar loop for motor planning.

Gao Z, Davis C, Thomas AM, Economo MN, Abrego AM, Svoboda K, De Zeeuw CI, Li N.

Nature. 2018 Nov;563(7729):113-116. doi: 10.1038/s41586-018-0633-x. Epub 2018 Oct 17.

21.

Thy1 transgenic mice expressing the red fluorescent calcium indicator jRGECO1a for neuronal population imaging in vivo.

Dana H, Novak O, Guardado-Montesino M, Fransen JW, Hu A, Borghuis BG, Guo C, Kim DS, Svoboda K.

PLoS One. 2018 Oct 11;13(10):e0205444. doi: 10.1371/journal.pone.0205444. eCollection 2018.

22.

Histology of NeoMTA Plus and Quick-Set2 in Contact with Pulp and Periradicular Tissues in a Canine Model.

Walsh RM, Woodmansey KF, He J, Svoboda KK, Primus CM, Opperman LA.

J Endod. 2018 Sep;44(9):1389-1395. doi: 10.1016/j.joen.2018.05.001.

24.

Fertilizer and Soil Solubility of Secondary P Sources-The Estimation of Their Applicability to Agricultural Soils.

Václavková Š, Šyc M, Moško J, Pohořelý M, Svoboda K.

Environ Sci Technol. 2018 Sep 4;52(17):9810-9817. doi: 10.1021/acs.est.8b02105. Epub 2018 Aug 20.

PMID:
30078315
25.

Exposure to ZnO nanoparticles alters neuronal and vascular development in zebrafish: Acute and transgenerational effects mitigated with dissolved organic matter.

Kteeba SM, El-Ghobashy AE, El-Adawi HI, El-Rayis OA, Sreevidya VS, Guo L, Svoboda KR.

Environ Pollut. 2018 Nov;242(Pt A):433-448. doi: 10.1016/j.envpol.2018.06.030. Epub 2018 Jun 12.

PMID:
30005256
26.

Genetic Dissection of Neural Circuits: A Decade of Progress.

Luo L, Callaway EM, Svoboda K.

Neuron. 2018 May 16;98(4):865. doi: 10.1016/j.neuron.2018.05.004. No abstract available.

27.

Genetic Dissection of Neural Circuits: A Decade of Progress.

Luo L, Callaway EM, Svoboda K.

Neuron. 2018 Apr 18;98(2):256-281. doi: 10.1016/j.neuron.2018.03.040. Review. Erratum in: Neuron. 2018 May 16;98 (4):865.

28.

Low-Dimensional and Monotonic Preparatory Activity in Mouse Anterior Lateral Motor Cortex.

Inagaki HK, Inagaki M, Romani S, Svoboda K.

J Neurosci. 2018 Apr 25;38(17):4163-4185. doi: 10.1523/JNEUROSCI.3152-17.2018. Epub 2018 Mar 28.

29.

Dynamic cues for whisker-based object localization: An analytical solution to vibration during active whisker touch.

Vaxenburg R, Wyche I, Svoboda K, Efros AL, Hires SA.

PLoS Comput Biol. 2018 Mar 27;14(3):e1006032. doi: 10.1371/journal.pcbi.1006032. eCollection 2018 Mar.

30.

Toxicity interactions between manganese (Mn) and lead (Pb) or cadmium (Cd) in a model organism the nematode C. elegans.

Lu C, Svoboda KR, Lenz KA, Pattison C, Ma H.

Environ Sci Pollut Res Int. 2018 Jun;25(16):15378-15389. doi: 10.1007/s11356-018-1752-5. Epub 2018 Mar 21.

PMID:
29564703
31.

Benzalkonium chloride, benzethonium chloride, and chloroxylenol - Three replacement antimicrobials are more toxic than triclosan and triclocarban in two model organisms.

Sreevidya VS, Lenz KA, Svoboda KR, Ma H.

Environ Pollut. 2018 Apr;235:814-824. doi: 10.1016/j.envpol.2017.12.108. Epub 2018 Feb 21.

PMID:
29348075
32.

Oral Sciences PhD Program Enrollment, Graduates, and Placement: 1994 to 2016.

Herzog CR, Berzins DW, DenBesten P, Gregory RL, Hargreaves KM, Messer RLW, Mina M, Mooney MP, Paine ML, Phillips C, Presland RB, Quivey RG, Scannapieco FA, Sheridan JF, Svoboda KKH, Trackman PC, Walker MP, Walker SG, Wang CY, Hu JCC.

J Dent Res. 2018 May;97(5):483-491. doi: 10.1177/0022034517749506. Epub 2018 Jan 12.

33.

Mercury removal from MSW incineration flue gas by mineral-based sorbents.

Rumayor M, Svoboda K, Švehla J, Pohořelý M, Šyc M.

Waste Manag. 2018 Mar;73:265-270. doi: 10.1016/j.wasman.2017.12.007. Epub 2017 Dec 13.

PMID:
29248369
34.

Neural mechanisms of movement planning: motor cortex and beyond.

Svoboda K, Li N.

Curr Opin Neurobiol. 2018 Apr;49:33-41. doi: 10.1016/j.conb.2017.10.023. Epub 2017 Nov 21. Review.

PMID:
29172091
35.

Fully integrated silicon probes for high-density recording of neural activity.

Jun JJ, Steinmetz NA, Siegle JH, Denman DJ, Bauza M, Barbarits B, Lee AK, Anastassiou CA, Andrei A, Aydın Ç, Barbic M, Blanche TJ, Bonin V, Couto J, Dutta B, Gratiy SL, Gutnisky DA, Häusser M, Karsh B, Ledochowitsch P, Lopez CM, Mitelut C, Musa S, Okun M, Pachitariu M, Putzeys J, Rich PD, Rossant C, Sun WL, Svoboda K, Carandini M, Harris KD, Koch C, O'Keefe J, Harris TD.

Nature. 2017 Nov 8;551(7679):232-236. doi: 10.1038/nature24636.

36.

Material analysis of Bottom ash from waste-to-energy plants.

Šyc M, Krausová A, Kameníková P, Šomplák R, Pavlas M, Zach B, Pohořelý M, Svoboda K, Punčochář M.

Waste Manag. 2018 Mar;73:360-366. doi: 10.1016/j.wasman.2017.10.045. Epub 2017 Nov 2.

PMID:
29103897
37.

Mitigation of gaseous mercury emissions from waste-to-energy facilities: Homogeneous and heterogeneous Hg-oxidation pathways in presence of fly ashes.

Rumayor M, Svoboda K, Švehla J, Pohořelý M, Šyc M.

J Environ Manage. 2018 Jan 15;206:276-283. doi: 10.1016/j.jenvman.2017.10.039. Epub 2017 Oct 27.

PMID:
29096141
38.

Circuits in the rodent brainstem that control whisking in concert with other orofacial motor actions.

McElvain LE, Friedman B, Karten HJ, Svoboda K, Wang F, Deschênes M, Kleinfeld D.

Neuroscience. 2018 Jan 1;368:152-170. doi: 10.1016/j.neuroscience.2017.08.034. Epub 2017 Aug 23. Review.

39.

Zinc oxide nanoparticle toxicity in embryonic zebrafish: Mitigation with different natural organic matter.

Kteeba SM, El-Adawi HI, El-Rayis OA, El-Ghobashy AE, Schuld JL, Svoboda KR, Guo L.

Environ Pollut. 2017 Nov;230:1125-1140. doi: 10.1016/j.envpol.2017.07.042. Epub 2017 Aug 30.

PMID:
28841783
40.

Biglycan and Decorin Expression and Distribution in Palatal Adhesion.

Ibrahim I, Serrano MJ, Ruest LB, Svoboda KKH.

J Dent Res. 2017 Nov;96(12):1445-1450. doi: 10.1177/0022034517722783. Epub 2017 Jul 31.

PMID:
28759311
41.

Neural signatures of dynamic stimulus selection in Drosophila.

Sun Y, Nern A, Franconville R, Dana H, Schreiter ER, Looger LL, Svoboda K, Kim DS, Hermundstad AM, Jayaraman V.

Nat Neurosci. 2017 Aug;20(8):1104-1113. doi: 10.1038/nn.4581. Epub 2017 Jun 12.

PMID:
28604683
42.

Flow of Information Underlying a Tactile Decision in Mice.

Li N, Guo ZV, Chen TW, Svoboda K.

In: Buzsáki G, Christen Y, editors. Micro-, Meso- and Macro-Dynamics of the Brain [Internet]. Cham (CH): Springer; 2016.
2016 May 3.

43.

Mechanisms underlying a thalamocortical transformation during active tactile sensation.

Gutnisky DA, Yu J, Hires SA, To MS, Bale MR, Svoboda K, Golomb D.

PLoS Comput Biol. 2017 Jun 7;13(6):e1005576. doi: 10.1371/journal.pcbi.1005576. eCollection 2017 Jun.

44.

A Map of Anticipatory Activity in Mouse Motor Cortex.

Chen TW, Li N, Daie K, Svoboda K.

Neuron. 2017 May 17;94(4):866-879.e4. doi: 10.1016/j.neuron.2017.05.005.

45.

Maintenance of persistent activity in a frontal thalamocortical loop.

Guo ZV, Inagaki HK, Daie K, Druckmann S, Gerfen CR, Svoboda K.

Nature. 2017 May 11;545(7653):181-186. doi: 10.1038/nature22324. Epub 2017 May 3.

46.

Middle cerebral artery aneurysms with intracerebral hematoma-the impact of side and volume on final outcome.

Navratil O, Duris K, Juran V, Neuman E, Svoboda K, Smrcka M.

Acta Neurochir (Wien). 2017 Mar;159(3):543-547. doi: 10.1007/s00701-016-3070-3. Epub 2017 Jan 9.

PMID:
28070645
47.

Layer 4 fast-spiking interneurons filter thalamocortical signals during active somatosensation.

Yu J, Gutnisky DA, Hires SA, Svoboda K.

Nat Neurosci. 2016 Dec;19(12):1647-1657. doi: 10.1038/nn.4412. Epub 2016 Oct 17.

PMID:
27749825
48.

The molecules in the corneal basement membrane zone affected by mustard exposure suggest potential therapies.

Gordon MK, DeSantis-Rodrigues A, Hahn R, Zhou P, Chang Y, Svoboda KK, Gerecke DR.

Ann N Y Acad Sci. 2016 Aug;1378(1):158-165. doi: 10.1111/nyas.13226. Review.

49.

Imaging the Neural Symphony.

Svoboda K.

Cerebrum. 2016 Apr 1;2016. pii: cer-05-16. eCollection 2016 Mar-Apr.

50.

Corrigendum: Robust neuronal dynamics in premotor cortex during motor planning.

Li N, Daie K, Svoboda K, Druckmann S.

Nature. 2016 Sep 1;537(7618):122. doi: 10.1038/nature18623. Epub 2016 Jun 29. No abstract available.

PMID:
27362233

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