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Items: 1 to 50 of 351

1.

The free energy landscape of the oncogene protein E7 of human papillomavirus type 16 reveals a complex interplay between ordered and disordered regions.

Kukic P, Lo Piccolo GM, Nogueira MO, Svergun DI, Vendruscolo M, Felli IC, Pierattelli R.

Sci Rep. 2019 Apr 9;9(1):5822. doi: 10.1038/s41598-019-41925-4.

2.

Octa-repeat domain of the mammalian prion protein mRNA forms stable A-helical hairpin structure rather than G-quadruplexes.

Czech A, Konarev PV, Goebel I, Svergun DI, Wills PR, Ignatova Z.

Sci Rep. 2019 Feb 21;9(1):2465. doi: 10.1038/s41598-019-39213-2.

3.

An NAD+ Phosphorylase Toxin Triggers Mycobacterium tuberculosis Cell Death.

Freire DM, Gutierrez C, Garza-Garcia A, Grabowska AD, Sala AJ, Ariyachaokun K, Panikova T, Beckham KSH, Colom A, Pogenberg V, Cianci M, Tuukkanen A, Boudehen YM, Peixoto A, Botella L, Svergun DI, Schnappinger D, Schneider TR, Genevaux P, de Carvalho LPS, Wilmanns M, Parret AHA, Neyrolles O.

Mol Cell. 2019 Mar 21;73(6):1282-1291.e8. doi: 10.1016/j.molcel.2019.01.028. Epub 2019 Feb 18.

4.

Molecular Dissection of the Intrinsically Disordered Estrogen Receptor Alpha-NTD.

Manalastas KG, Svergun DI.

Structure. 2019 Feb 5;27(2):207-208. doi: 10.1016/j.str.2019.01.006.

PMID:
30726752
5.

Utilization of Staphylococcal Immune Evasion Protein Sbi as a Novel Vaccine Adjuvant.

Yang Y, Back CR, Gräwert MA, Wahid AA, Denton H, Kildani R, Paulin J, Wörner K, Kaiser W, Svergun DI, Sartbaeva A, Watts AG, Marchbank KJ, van den Elsen JMH.

Front Immunol. 2019 Jan 11;9:3139. doi: 10.3389/fimmu.2018.03139. eCollection 2018.

6.

Solution Structure, Self-Assembly, and Membrane Interactions of the Matrix Protein from Newcastle Disease Virus at Neutral and Acidic pH.

Shtykova EV, Petoukhov MV, Dadinova LA, Fedorova NV, Tashkin VY, Timofeeva TA, Ksenofontov AL, Loshkarev NA, Baratova LA, Jeffries CM, Svergun DI, Batishchev OV.

J Virol. 2019 Mar 5;93(6). pii: e01450-18. doi: 10.1128/JVI.01450-18. Print 2019 Mar 15.

PMID:
30567981
7.

Investigation of charge ratio variation in mRNA - DEAE-dextran polyplex delivery systems.

Siewert C, Haas H, Nawroth T, Ziller A, Nogueira SS, Schroer MA, Blanchet CE, Svergun DI, Radulescu A, Bates F, Huesemann Y, Radsak MP, Sahin U, Langguth P.

Biomaterials. 2019 Feb;192:612-620. doi: 10.1016/j.biomaterials.2018.10.020. Epub 2018 Nov 17.

8.

Structural basis for activation of plasma-membrane Ca2+-ATPase by calmodulin.

Nitsche J, Josts I, Heidemann J, Mertens HD, Maric S, Moulin M, Haertlein M, Busch S, Forsyth VT, Svergun DI, Uetrecht C, Tidow H.

Commun Biol. 2018 Nov 26;1:206. doi: 10.1038/s42003-018-0203-7. eCollection 2018.

9.

Human MICAL1: Activation by the small GTPase Rab8 and small-angle X-ray scattering studies on the oligomerization state of MICAL1 and its complex with Rab8.

Esposito A, Ventura V, Petoukhov MV, Rai A, Svergun DI, Vanoni MA.

Protein Sci. 2019 Jan;28(1):150-166. doi: 10.1002/pro.3512. Epub 2018 Oct 31.

PMID:
30242933
10.

Probing the Architecture of a Multi-PDZ Domain Protein: Structure of PDZK1 in Solution.

Hajizadeh NR, Pieprzyk J, Skopintsev P, Flayhan A, Svergun DI, Löw C.

Structure. 2018 Nov 6;26(11):1522-1533.e5. doi: 10.1016/j.str.2018.07.016. Epub 2018 Sep 13.

PMID:
30220543
11.

Comment on "Innovative scattering analysis shows that hydrophobic disordered proteins are expanded in water".

Fuertes G, Banterle N, Ruff KM, Chowdhury A, Pappu RV, Svergun DI, Lemke EA.

Science. 2018 Aug 31;361(6405). pii: eaau8230. doi: 10.1126/science.aau8230.

PMID:
30166461
12.

Formation of a Secretion-Competent Protein Complex by a Dynamic Wrap-around Binding Mechanism.

Gupta AA, Reinartz I, Karunanithy G, Spilotros A, Jonna VR, Hofer A, Svergun DI, Baldwin AJ, Schug A, Wolf-Watz M.

J Mol Biol. 2018 Sep 14;430(18 Pt B):3157-3169. doi: 10.1016/j.jmb.2018.07.014. Epub 2018 Aug 2.

PMID:
30021116
13.

Direct shape determination of intermediates in evolving macromolecular solutions from small-angle scattering data.

Konarev PV, Svergun DI.

IUCrJ. 2018 May 30;5(Pt 4):402-409. doi: 10.1107/S2052252518005900. eCollection 2018 Jul 1.

14.

Structural complexity of the co-chaperone SGTA: a conserved C-terminal region is implicated in dimerization and substrate quality control.

Martínez-Lumbreras S, Krysztofinska EM, Thapaliya A, Spilotros A, Matak-Vinkovic D, Salvadori E, Roboti P, Nyathi Y, Muench JH, Roessler MM, Svergun DI, High S, Isaacson RL.

BMC Biol. 2018 Jul 11;16(1):76. doi: 10.1186/s12915-018-0542-3.

15.

Smaller capillaries improve the small-angle X-ray scattering signal and sample consumption for biomacromolecular solutions.

Schroer MA, Blanchet CE, Gruzinov AY, Gräwert MA, Brennich ME, Hajizadeh NR, Jeffries CM, Svergun DI.

J Synchrotron Radiat. 2018 Jul 1;25(Pt 4):1113-1122. doi: 10.1107/S1600577518007907. Epub 2018 Jun 26.

16.

Conformational States of ABC Transporter MsbA in a Lipid Environment Investigated by Small-Angle Scattering Using Stealth Carrier Nanodiscs.

Josts I, Nitsche J, Maric S, Mertens HD, Moulin M, Haertlein M, Prevost S, Svergun DI, Busch S, Forsyth VT, Tidow H.

Structure. 2018 Aug 7;26(8):1072-1079.e4. doi: 10.1016/j.str.2018.05.007. Epub 2018 Jun 21.

PMID:
29937358
17.

Recombinant production of A1S_0222 from Acinetobacter baumannii ATCC 17978 and confirmation of its DNA-(adenine N6)-methyltransferase activity.

Blaschke U, Suwono B, Zafari S, Ebersberger I, Skiebe E, Jeffries CM, Svergun DI, Wilharm G.

Protein Expr Purif. 2018 Nov;151:78-85. doi: 10.1016/j.pep.2018.06.009. Epub 2018 Jun 22.

PMID:
29908915
18.

Machine Learning Methods for X-Ray Scattering Data Analysis from Biomacromolecular Solutions.

Franke D, Jeffries CM, Svergun DI.

Biophys J. 2018 Jun 5;114(11):2485-2492. doi: 10.1016/j.bpj.2018.04.018.

19.

Structure-specific recognition protein-1 (SSRP1) is an elongated homodimer that binds histones.

Marcianò G, Da Vela S, Tria G, Svergun DI, Byron O, Huang DT.

J Biol Chem. 2018 Jun 29;293(26):10071-10083. doi: 10.1074/jbc.RA117.000994. Epub 2018 May 15.

20.

Consensus Bayesian assessment of protein molecular mass from solution X-ray scattering data.

Hajizadeh NR, Franke D, Jeffries CM, Svergun DI.

Sci Rep. 2018 May 8;8(1):7204. doi: 10.1038/s41598-018-25355-2.

21.

Integrated beamline control and data acquisition for small-angle X-ray scattering at the P12 BioSAXS beamline at PETRAIII storage ring DESY.

Hajizadeh NR, Franke D, Svergun DI.

J Synchrotron Radiat. 2018 May 1;25(Pt 3):906-914. doi: 10.1107/S1600577518005398. Epub 2018 Apr 25.

22.

Quantitative 3D determination of self-assembled structures on nanoparticles using small angle neutron scattering.

Luo Z, Marson D, Ong QK, Loiudice A, Kohlbrecher J, Radulescu A, Krause-Heuer A, Darwish T, Balog S, Buonsanti R, Svergun DI, Posocco P, Stellacci F.

Nat Commun. 2018 Apr 9;9(1):1343. doi: 10.1038/s41467-018-03699-7.

23.

Optical and Structural Characterization of a Chronic Myeloid Leukemia DNA Biosensor.

Cordeiro M, Otrelo-Cardoso AR, Svergun DI, Konarev PV, Lima JC, Santos-Silva T, Baptista PV.

ACS Chem Biol. 2018 May 18;13(5):1235-1242. doi: 10.1021/acschembio.8b00029. Epub 2018 Mar 23.

PMID:
29562136
24.

Structural model of human dUTPase in complex with a novel proteinaceous inhibitor.

Nyíri K, Mertens HDT, Tihanyi B, Nagy GN, Kőhegyi B, Matejka J, Harris MJ, Szabó JE, Papp-Kádár V, Németh-Pongrácz V, Ozohanics O, Vékey K, Svergun DI, Borysik AJ, Vértessy BG.

Sci Rep. 2018 Mar 12;8(1):4326. doi: 10.1038/s41598-018-22145-8.

25.

Functional interaction of low-homology FRPs from different cyanobacteria with Synechocystis OCP.

Slonimskiy YB, Maksimov EG, Lukashev EP, Moldenhauer M, Jeffries CM, Svergun DI, Friedrich T, Sluchanko NN.

Biochim Biophys Acta Bioenerg. 2018 May;1859(5):382-393. doi: 10.1016/j.bbabio.2018.03.001. Epub 2018 Mar 7.

26.

Structural Basis for Draxin-Modulated Axon Guidance and Fasciculation by Netrin-1 through DCC.

Liu Y, Bhowmick T, Liu Y, Gao X, Mertens HDT, Svergun DI, Xiao J, Zhang Y, Wang JH, Meijers R.

Neuron. 2018 Mar 21;97(6):1261-1267.e4. doi: 10.1016/j.neuron.2018.02.010. Epub 2018 Mar 1.

27.

Disease Variants of FGFR3 Reveal Molecular Basis for the Recognition and Additional Roles for Cdc37 in Hsp90 Chaperone System.

Bunney TD, Inglis AJ, Sanfelice D, Farrell B, Kerr CJ, Thompson GS, Masson GR, Thiyagarajan N, Svergun DI, Williams RL, Breeze AL, Katan M.

Structure. 2018 Mar 6;26(3):446-458.e8. doi: 10.1016/j.str.2018.01.016. Epub 2018 Feb 22.

28.

The Molecular Bases of the Dual Regulation of Bacterial Iron Sulfur Cluster Biogenesis by CyaY and IscX.

Adinolfi S, Puglisi R, Crack JC, Iannuzzi C, Dal Piaz F, Konarev PV, Svergun DI, Martin S, Le Brun NE, Pastore A.

Front Mol Biosci. 2018 Feb 2;4:97. doi: 10.3389/fmolb.2017.00097. eCollection 2017.

29.

Saposin Lipid Nanoparticles: A Highly Versatile and Modular Tool for Membrane Protein Research.

Flayhan A, Mertens HDT, Ural-Blimke Y, Martinez Molledo M, Svergun DI, Löw C.

Structure. 2018 Feb 6;26(2):345-355.e5. doi: 10.1016/j.str.2018.01.007.

30.

Matrix proteins of enveloped viruses: a case study of Influenza A virus M1 protein.

Kordyukova LV, Shtykova EV, Baratova LA, Svergun DI, Batishchev OV.

J Biomol Struct Dyn. 2019 Feb;37(3):671-690. doi: 10.1080/07391102.2018.1436089. Epub 2018 Feb 13.

PMID:
29388479
31.

Macromolecular pHPMA-Based Nanoparticles with Cholesterol for Solid Tumor Targeting: Behavior in HSA Protein Environment.

Zhang X, Niebuur BJ, Chytil P, Etrych T, Filippov SK, Kikhney A, Wieland DCF, Svergun DI, Papadakis CM.

Biomacromolecules. 2018 Feb 12;19(2):470-480. doi: 10.1021/acs.biomac.7b01579. Epub 2018 Jan 30.

PMID:
29381335
32.

Epsin and Sla2 form assemblies through phospholipid interfaces.

Garcia-Alai MM, Heidemann J, Skruzny M, Gieras A, Mertens HDT, Svergun DI, Kaksonen M, Uetrecht C, Meijers R.

Nat Commun. 2018 Jan 23;9(1):328. doi: 10.1038/s41467-017-02443-x.

33.

CHROMIXS: automatic and interactive analysis of chromatography-coupled small-angle X-ray scattering data.

Panjkovich A, Svergun DI.

Bioinformatics. 2018 Jun 1;34(11):1944-1946. doi: 10.1093/bioinformatics/btx846.

34.

Influenza virus Matrix Protein M1 preserves its conformation with pH, changing multimerization state at the priming stage due to electrostatics.

Shtykova EV, Dadinova LA, Fedorova NV, Golanikov AE, Bogacheva EN, Ksenofontov AL, Baratova LA, Shilova LA, Tashkin VY, Galimzyanov TR, Jeffries CM, Svergun DI, Batishchev OV.

Sci Rep. 2017 Dec 1;7(1):16793. doi: 10.1038/s41598-017-16986-y.

35.

Structural insights of RmXyn10A - A prebiotic-producing GH10 xylanase with a non-conserved aglycone binding region.

Aronsson A, Güler F, Petoukhov MV, Crennell SJ, Svergun DI, Linares-Pastén JA, Nordberg Karlsson E.

Biochim Biophys Acta Proteins Proteom. 2018 Feb;1866(2):292-306. doi: 10.1016/j.bbapap.2017.11.006. Epub 2017 Nov 14.

36.

Structuralization of magnetic nanoparticles in 5CB liquid crystals.

Gdovinová V, Schroer MA, Tomašovičová N, Appel I, Behrens S, Majorošová J, Kováč J, Svergun DI, Kopčanský P.

Soft Matter. 2017 Nov 8;13(43):7890-7896. doi: 10.1039/c7sm01234a.

PMID:
29022016
37.

Progress in small-angle scattering from biological solutions at high-brilliance synchrotrons.

Tuukkanen AT, Spilotros A, Svergun DI.

IUCrJ. 2017 Aug 8;4(Pt 5):518-528. doi: 10.1107/S2052252517008740. eCollection 2017 Sep 1. Review.

38.

2017 publication guidelines for structural modelling of small-angle scattering data from biomolecules in solution: an update.

Trewhella J, Duff AP, Durand D, Gabel F, Guss JM, Hendrickson WA, Hura GL, Jacques DA, Kirby NM, Kwan AH, Pérez J, Pollack L, Ryan TM, Sali A, Schneidman-Duhovny D, Schwede T, Svergun DI, Sugiyama M, Tainer JA, Vachette P, Westbrook J, Whitten AE.

Acta Crystallogr D Struct Biol. 2017 Sep 1;73(Pt 9):710-728. doi: 10.1107/S2059798317011597. Epub 2017 Aug 18.

39.

ATSAS 2.8: a comprehensive data analysis suite for small-angle scattering from macromolecular solutions.

Franke D, Petoukhov MV, Konarev PV, Panjkovich A, Tuukkanen A, Mertens HDT, Kikhney AG, Hajizadeh NR, Franklin JM, Jeffries CM, Svergun DI.

J Appl Crystallogr. 2017 Jun 26;50(Pt 4):1212-1225. doi: 10.1107/S1600576717007786. eCollection 2017 Aug 1.

40.

Block and Gradient Copoly(2-oxazoline) Micelles: Strikingly Different on the Inside.

Filippov SK, Verbraeken B, Konarev PV, Svergun DI, Angelov B, Vishnevetskaya NS, Papadakis CM, Rogers S, Radulescu A, Courtin T, Martins JC, Starovoytova L, Hruby M, Stepanek P, Kravchenko VS, Potemkin II, Hoogenboom R.

J Phys Chem Lett. 2017 Aug 17;8(16):3800-3804. doi: 10.1021/acs.jpclett.7b01588. Epub 2017 Aug 2.

41.

Highly selective tungstate transporter protein TupA from Desulfovibrio alaskensis G20.

Otrelo-Cardoso AR, Nair RR, Correia MAS, Cordeiro RSC, Panjkovich A, Svergun DI, Santos-Silva T, Rivas MG.

Sci Rep. 2017 Jul 19;7(1):5798. doi: 10.1038/s41598-017-06133-y.

42.

Decoupling of size and shape fluctuations in heteropolymeric sequences reconciles discrepancies in SAXS vs. FRET measurements.

Fuertes G, Banterle N, Ruff KM, Chowdhury A, Mercadante D, Koehler C, Kachala M, Estrada Girona G, Milles S, Mishra A, Onck PR, Gräter F, Esteban-Martín S, Pappu RV, Svergun DI, Lemke EA.

Proc Natl Acad Sci U S A. 2017 Aug 1;114(31):E6342-E6351. doi: 10.1073/pnas.1704692114. Epub 2017 Jul 17.

43.

A Spring-Loaded Mechanism Governs the Clamp-like Dynamics of the Skp Chaperone.

Holdbrook DA, Burmann BM, Huber RG, Petoukhov MV, Svergun DI, Hiller S, Bond PJ.

Structure. 2017 Jul 5;25(7):1079-1088.e3. doi: 10.1016/j.str.2017.05.018. Epub 2017 Jun 22.

44.

Combining NMR and small angle X-ray scattering for the study of biomolecular structure and dynamics.

Mertens HDT, Svergun DI.

Arch Biochem Biophys. 2017 Aug 15;628:33-41. doi: 10.1016/j.abb.2017.05.005. Epub 2017 May 10. Review.

45.

Structure of the mycobacterial ESX-5 type VII secretion system membrane complex by single-particle analysis.

Beckham KS, Ciccarelli L, Bunduc CM, Mertens HD, Ummels R, Lugmayr W, Mayr J, Rettel M, Savitski MM, Svergun DI, Bitter W, Wilmanns M, Marlovits TC, Parret AH, Houben EN.

Nat Microbiol. 2017 Apr 10;2:17047. doi: 10.1038/nmicrobiol.2017.47.

PMID:
28394313
46.

Structural reorganization of the chromatin remodeling enzyme Chd1 upon engagement with nucleosomes.

Sundaramoorthy R, Hughes AL, Singh V, Wiechens N, Ryan DP, El-Mkami H, Petoukhov M, Svergun DI, Treutlein B, Quack S, Fischer M, Michaelis J, Böttcher B, Norman DG, Owen-Hughes T.

Elife. 2017 Mar 23;6. pii: e22510. doi: 10.7554/eLife.22510.

47.

Structural basis of the interaction between the putative adhesion-involved and iron-regulated FrpD and FrpC proteins of Neisseria meningitidis.

Sviridova E, Rezacova P, Bondar A, Veverka V, Novak P, Schenk G, Svergun DI, Kuta Smatanova I, Bumba L.

Sci Rep. 2017 Jan 13;7:40408. doi: 10.1038/srep40408.

48.

The Shigella Virulence Factor IcsA Relieves N-WASP Autoinhibition by Displacing the Verprolin Homology/Cofilin/Acidic (VCA) Domain.

Mauricio RP, Jeffries CM, Svergun DI, Deane JE.

J Biol Chem. 2017 Jan 6;292(1):134-145. doi: 10.1074/jbc.M116.758003. Epub 2016 Nov 23.

49.

Resolution of ab initio shapes determined from small-angle scattering.

Tuukkanen AT, Kleywegt GJ, Svergun DI.

IUCrJ. 2016 Oct 27;3(Pt 6):440-447. eCollection 2016 Nov 1.

50.

Potent and selective bivalent inhibitors of BET bromodomains.

Waring MJ, Chen H, Rabow AA, Walker G, Bobby R, Boiko S, Bradbury RH, Callis R, Clark E, Dale I, Daniels DL, Dulak A, Flavell L, Holdgate G, Jowitt TA, Kikhney A, McAlister M, Méndez J, Ogg D, Patel J, Petteruti P, Robb GR, Robers MB, Saif S, Stratton N, Svergun DI, Wang W, Whittaker D, Wilson DM, Yao Y.

Nat Chem Biol. 2016 Dec;12(12):1097-1104. doi: 10.1038/nchembio.2210. Epub 2016 Oct 24.

PMID:
27775716

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