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Items: 33

1.

Electron cryo-microscopy of bacteriophage PR772 reveals the elusive vertex complex and the capsid architecture.

Reddy HK, Carroni M, Hajdu J, Svenda M.

Elife. 2019 Sep 12;8. pii: e48496. doi: 10.7554/eLife.48496.

2.

Erratum: Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses. Corrigendum.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2019 Apr 9;6(Pt 3):500. doi: 10.1107/S2052252519004317. eCollection 2019 May 1.

3.

Electrospray sample injection for single-particle imaging with x-ray lasers.

Bielecki J, Hantke MF, Daurer BJ, Reddy HKN, Hasse D, Larsson DSD, Gunn LH, Svenda M, Munke A, Sellberg JA, Flueckiger L, Pietrini A, Nettelblad C, Lundholm I, Carlsson G, Okamoto K, Timneanu N, Westphal D, Kulyk O, Higashiura A, van der Schot G, Loh ND, Wysong TE, Bostedt C, Gorkhover T, Iwan B, Seibert MM, Osipov T, Walter P, Hart P, Bucher M, Ulmer A, Ray D, Carini G, Ferguson KR, Andersson I, Andreasson J, Hajdu J, Maia FRNC.

Sci Adv. 2019 May 3;5(5):eaav8801. doi: 10.1126/sciadv.aav8801. eCollection 2019 May.

4.

Rayleigh-scattering microscopy for tracking and sizing nanoparticles in focused aerosol beams.

Hantke MF, Bielecki J, Kulyk O, Westphal D, Larsson DSD, Svenda M, Reddy HKN, Kirian RA, Andreasson J, Hajdu J, Maia FRNC.

IUCrJ. 2018 Sep 11;5(Pt 6):673-680. doi: 10.1107/S2052252518010837. eCollection 2018 Nov 1.

5.

Considerations for three-dimensional image reconstruction from experimental data in coherent diffractive imaging.

Lundholm IV, Sellberg JA, Ekeberg T, Hantke MF, Okamoto K, van der Schot G, Andreasson J, Barty A, Bielecki J, Bruza P, Bucher M, Carron S, Daurer BJ, Ferguson K, Hasse D, Krzywinski J, Larsson DSD, Morgan A, Mühlig K, Müller M, Nettelblad C, Pietrini A, Reddy HKN, Rupp D, Sauppe M, Seibert M, Svenda M, Swiggers M, Timneanu N, Ulmer A, Westphal D, Williams G, Zani A, Faigel G, Chapman HN, Möller T, Bostedt C, Hajdu J, Gorkhover T, Maia FRNC.

IUCrJ. 2018 Sep 1;5(Pt 5):531-541. doi: 10.1107/S2052252518010047. eCollection 2018 Sep 1.

6.

Cryo-EM structure of a Marseilleviridae virus particle reveals a large internal microassembly.

Okamoto K, Miyazaki N, Reddy HKN, Hantke MF, Maia FRNC, Larsson DSD, Abergel C, Claverie JM, Hajdu J, Murata K, Svenda M.

Virology. 2018 Mar;516:239-245. doi: 10.1016/j.virol.2018.01.021.

7.

Correlations in Scattered X-Ray Laser Pulses Reveal Nanoscale Structural Features of Viruses.

Kurta RP, Donatelli JJ, Yoon CH, Berntsen P, Bielecki J, Daurer BJ, DeMirci H, Fromme P, Hantke MF, Maia FRNC, Munke A, Nettelblad C, Pande K, Reddy HKN, Sellberg JA, Sierra RG, Svenda M, van der Schot G, Vartanyants IA, Williams GJ, Xavier PL, Aquila A, Zwart PH, Mancuso AP.

Phys Rev Lett. 2017 Oct 13;119(15):158102. doi: 10.1103/PhysRevLett.119.158102. Epub 2017 Oct 12.

8.

Structural variability and complexity of the giant Pithovirus sibericum particle revealed by high-voltage electron cryo-tomography and energy-filtered electron cryo-microscopy.

Okamoto K, Miyazaki N, Song C, Maia FRNC, Reddy HKN, Abergel C, Claverie JM, Hajdu J, Svenda M, Murata K.

Sci Rep. 2017 Oct 16;7(1):13291. doi: 10.1038/s41598-017-13390-4.

9.

Coherent soft X-ray diffraction imaging of coliphage PR772 at the Linac coherent light source.

Reddy HKN, Yoon CH, Aquila A, Awel S, Ayyer K, Barty A, Berntsen P, Bielecki J, Bobkov S, Bucher M, Carini GA, Carron S, Chapman H, Daurer B, DeMirci H, Ekeberg T, Fromme P, Hajdu J, Hanke MF, Hart P, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Kurta RP, Larsson DSD, Duane Loh N, Maia FRNC, Mancuso AP, Mühlig K, Munke A, Nam D, Nettelblad C, Ourmazd A, Rose M, Schwander P, Seibert M, Sellberg JA, Song C, Spence JCH, Svenda M, Van der Schot G, Vartanyants IA, Williams GJ, Xavier PL.

Sci Data. 2017 Jun 27;4:170079. doi: 10.1038/sdata.2017.79.

10.

Experimental strategies for imaging bioparticles with femtosecond hard X-ray pulses.

Daurer BJ, Okamoto K, Bielecki J, Maia FRNC, Mühlig K, Seibert MM, Hantke MF, Nettelblad C, Benner WH, Svenda M, Tîmneanu N, Ekeberg T, Loh ND, Pietrini A, Zani A, Rath AD, Westphal D, Kirian RA, Awel S, Wiedorn MO, van der Schot G, Carlsson GH, Hasse D, Sellberg JA, Barty A, Andreasson J, Boutet S, Williams G, Koglin J, Andersson I, Hajdu J, Larsson DSD.

IUCrJ. 2017 Apr 7;4(Pt 3):251-262. doi: 10.1107/S2052252517003591. eCollection 2017 May 1. Erratum in: IUCrJ. 2019 Apr 09;6(Pt 3):500.

11.

The infectious particle of insect-borne totivirus-like Omono River virus has raised ridges and lacks fibre complexes.

Okamoto K, Miyazaki N, Larsson DS, Kobayashi D, Svenda M, Mühlig K, Maia FR, Gunn LH, Isawa H, Kobayashi M, Sawabe K, Murata K, Hajdu J.

Sci Rep. 2016 Sep 12;6:33170. doi: 10.1038/srep33170.

12.

A data set from flash X-ray imaging of carboxysomes.

Hantke MF, Hasse D, Ekeberg T, John K, Svenda M, Loh D, Martin AV, Timneanu N, Larsson DS, van der Schot G, Carlsson GH, Ingelman M, Andreasson J, Westphal D, Iwan B, Uetrecht C, Bielecki J, Liang M, Stellato F, DePonte DP, Bari S, Hartmann R, Kimmel N, Kirian RA, Seibert MM, Mühlig K, Schorb S, Ferguson K, Bostedt C, Carron S, Bozek JD, Rolles D, Rudenko A, Foucar L, Epp SW, Chapman HN, Barty A, Andersson I, Hajdu J, Maia FR.

Sci Data. 2016 Aug 1;3:160061. doi: 10.1038/sdata.2016.61.

13.

Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser.

Ekeberg T, Svenda M, Seibert MM, Abergel C, Maia FR, Seltzer V, DePonte DP, Aquila A, Andreasson J, Iwan B, Jönsson O, Westphal D, Odić D, Andersson I, Barty A, Liang M, Martin AV, Gumprecht L, Fleckenstein H, Bajt S, Barthelmess M, Coppola N, Claverie JM, Loh ND, Bostedt C, Bozek JD, Krzywinski J, Messerschmidt M, Bogan MJ, Hampton CY, Sierra RG, Frank M, Shoeman RL, Lomb L, Foucar L, Epp SW, Rolles D, Rudenko A, Hartmann R, Hartmann A, Kimmel N, Holl P, Weidenspointner G, Rudek B, Erk B, Kassemeyer S, Schlichting I, Strüder L, Ullrich J, Schmidt C, Krasniqi F, Hauser G, Reich C, Soltau H, Schorb S, Hirsemann H, Wunderer C, Graafsma H, Chapman H, Hajdu J.

Sci Data. 2016 Aug 1;3:160060. doi: 10.1038/sdata.2016.60.

14.

Open data set of live cyanobacterial cells imaged using an X-ray laser.

van der Schot G, Svenda M, Maia FR, Hantke MF, DePonte DP, Seibert MM, Aquila A, Schulz J, Kirian RA, Liang M, Stellato F, Bari S, Iwan B, Andreasson J, Timneanu N, Bielecki J, Westphal D, Nunes de Almeida F, Odić D, Hasse D, Carlsson GH, Larsson DS, Barty A, Martin AV, Schorb S, Bostedt C, Bozek JD, Carron S, Ferguson K, Rolles D, Rudenko A, Epp SW, Foucar L, Rudek B, Erk B, Hartmann R, Kimmel N, Holl P, Englert L, Loh ND, Chapman HN, Andersson I, Hajdu J, Ekeberg T.

Sci Data. 2016 Aug 1;3:160058. doi: 10.1038/sdata.2016.58.

15.

Coherent diffraction of single Rice Dwarf virus particles using hard X-rays at the Linac Coherent Light Source.

Munke A, Andreasson J, Aquila A, Awel S, Ayyer K, Barty A, Bean RJ, Berntsen P, Bielecki J, Boutet S, Bucher M, Chapman HN, Daurer BJ, DeMirci H, Elser V, Fromme P, Hajdu J, Hantke MF, Higashiura A, Hogue BG, Hosseinizadeh A, Kim Y, Kirian RA, Reddy HK, Lan TY, Larsson DS, Liu H, Loh ND, Maia FR, Mancuso AP, Mühlig K, Nakagawa A, Nam D, Nelson G, Nettelblad C, Okamoto K, Ourmazd A, Rose M, van der Schot G, Schwander P, Seibert MM, Sellberg JA, Sierra RG, Song C, Svenda M, Timneanu N, Vartanyants IA, Westphal D, Wiedorn MO, Williams GJ, Xavier PL, Yoon CH, Zook J.

Sci Data. 2016 Aug 1;3:160064. doi: 10.1038/sdata.2016.64.

16.

Three-dimensional reconstruction of the giant mimivirus particle with an x-ray free-electron laser.

Ekeberg T, Svenda M, Abergel C, Maia FR, Seltzer V, Claverie JM, Hantke M, Jönsson O, Nettelblad C, van der Schot G, Liang M, DePonte DP, Barty A, Seibert MM, Iwan B, Andersson I, Loh ND, Martin AV, Chapman H, Bostedt C, Bozek JD, Ferguson KR, Krzywinski J, Epp SW, Rolles D, Rudenko A, Hartmann R, Kimmel N, Hajdu J.

Phys Rev Lett. 2015 Mar 6;114(9):098102. Epub 2015 Mar 2.

PMID:
25793853
17.

Imaging single cells in a beam of live cyanobacteria with an X-ray laser.

van der Schot G, Svenda M, Maia FR, Hantke M, DePonte DP, Seibert MM, Aquila A, Schulz J, Kirian R, Liang M, Stellato F, Iwan B, Andreasson J, Timneanu N, Westphal D, Almeida FN, Odic D, Hasse D, Carlsson GH, Larsson DS, Barty A, Martin AV, Schorb S, Bostedt C, Bozek JD, Rolles D, Rudenko A, Epp S, Foucar L, Rudek B, Hartmann R, Kimmel N, Holl P, Englert L, Duane Loh NT, Chapman HN, Andersson I, Hajdu J, Ekeberg T.

Nat Commun. 2015 Feb 11;6:5704. doi: 10.1038/ncomms6704.

PMID:
25669616
18.

Explosion dynamics of sucrose nanospheres monitored by time of flight spectrometry and coherent diffractive imaging at the split-and-delay beam line of the FLASH soft X-ray laser.

Rath AD, Timneanu N, Maia FR, Bielecki J, Fleckenstein H, Iwan B, Svenda M, Hasse D, Carlsson G, Westphal D, Mühlig K, Hantke M, Ekeberg T, Seibert MM, Zani A, Liang M, Stellato F, Kirian R, Bean R, Barty A, Galli L, Nass K, Barthelmess M, Aquila A, Toleikis S, Treusch R, Roling S, Wöstmann M, Zacharias H, Chapman HN, Bajt S, DePonte D, Hajdu J, Andreasson J.

Opt Express. 2014 Nov 17;22(23):28914-25. doi: 10.1364/OE.22.028914.

PMID:
25402130
19.

Automated identification and classification of single particle serial femtosecond X-ray diffraction data.

Andreasson J, Martin AV, Liang M, Timneanu N, Aquila A, Wang F, Iwan B, Svenda M, Ekeberg T, Hantke M, Bielecki J, Rolles D, Rudenko A, Foucar L, Hartmann R, Erk B, Rudek B, Chapman HN, Hajdu J, Barty A.

Opt Express. 2014 Feb 10;22(3):2497-510. doi: 10.1364/OE.22.002497.

PMID:
24663542
20.

Analysis of electrocardiogram in chronic obstructive pulmonary disease patients.

Lazović B, Svenda MZ, Mazić S, Stajić Z, Delić M.

Med Pregl. 2013 Mar-Apr;66(3-4):126-9.

PMID:
23653989
21.

Femtosecond free-electron laser x-ray diffraction data sets for algorithm development.

Kassemeyer S, Steinbrener J, Lomb L, Hartmann E, Aquila A, Barty A, Martin AV, Hampton CY, Bajt S, Barthelmess M, Barends TR, Bostedt C, Bott M, Bozek JD, Coppola N, Cryle M, DePonte DP, Doak RB, Epp SW, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hartmann A, Hartmann R, Hauser G, Hirsemann H, Hömke A, Holl P, Jönsson O, Kimmel N, Krasniqi F, Liang M, Maia FR, Marchesini S, Nass K, Reich C, Rolles D, Rudek B, Rudenko A, Schmidt C, Schulz J, Shoeman RL, Sierra RG, Soltau H, Spence JC, Starodub D, Stellato F, Stern S, Stier G, Svenda M, Weidenspointner G, Weierstall U, White TA, Wunderer C, Frank M, Chapman HN, Ullrich J, Strüder L, Bogan MJ, Schlichting I.

Opt Express. 2012 Feb 13;20(4):4149-58. doi: 10.1364/OE.20.004149.

PMID:
22418172
22.

Unsupervised classification of single-particle X-ray diffraction snapshots by spectral clustering.

Yoon CH, Schwander P, Abergel C, Andersson I, Andreasson J, Aquila A, Bajt S, Barthelmess M, Barty A, Bogan MJ, Bostedt C, Bozek J, Chapman HN, Claverie JM, Coppola N, DePonte DP, Ekeberg T, Epp SW, Erk B, Fleckenstein H, Foucar L, Graafsma H, Gumprecht L, Hajdu J, Hampton CY, Hartmann A, Hartmann E, Hartmann R, Hauser G, Hirsemann H, Holl P, Kassemeyer S, Kimmel N, Kiskinova M, Liang M, Loh NT, Lomb L, Maia FR, Martin AV, Nass K, Pedersoli E, Reich C, Rolles D, Rudek B, Rudenko A, Schlichting I, Schulz J, Seibert M, Seltzer V, Shoeman RL, Sierra RG, Soltau H, Starodub D, Steinbrener J, Stier G, Strüder L, Svenda M, Ullrich J, Weidenspointner G, White TA, Wunderer C, Ourmazd A.

Opt Express. 2011 Aug 15;19(17):16542-9. doi: 10.1364/OE.19.016542.

PMID:
21935018
23.

Single mimivirus particles intercepted and imaged with an X-ray laser.

Seibert MM, Ekeberg T, Maia FR, Svenda M, Andreasson J, Jönsson O, Odić D, Iwan B, Rocker A, Westphal D, Hantke M, DePonte DP, Barty A, Schulz J, Gumprecht L, Coppola N, Aquila A, Liang M, White TA, Martin A, Caleman C, Stern S, Abergel C, Seltzer V, Claverie JM, Bostedt C, Bozek JD, Boutet S, Miahnahri AA, Messerschmidt M, Krzywinski J, Williams G, Hodgson KO, Bogan MJ, Hampton CY, Sierra RG, Starodub D, Andersson I, Bajt S, Barthelmess M, Spence JC, Fromme P, Weierstall U, Kirian R, Hunter M, Doak RB, Marchesini S, Hau-Riege SP, Frank M, Shoeman RL, Lomb L, Epp SW, Hartmann R, Rolles D, Rudenko A, Schmidt C, Foucar L, Kimmel N, Holl P, Rudek B, Erk B, Hömke A, Reich C, Pietschner D, Weidenspointner G, Strüder L, Hauser G, Gorke H, Ullrich J, Schlichting I, Herrmann S, Schaller G, Schopper F, Soltau H, Kühnel KU, Andritschke R, Schröter CD, Krasniqi F, Bott M, Schorb S, Rupp D, Adolph M, Gorkhover T, Hirsemann H, Potdevin G, Graafsma H, Nilsson B, Chapman HN, Hajdu J.

Nature. 2011 Feb 3;470(7332):78-81. doi: 10.1038/nature09748.

24.

Femtosecond X-ray protein nanocrystallography.

Chapman HN, Fromme P, Barty A, White TA, Kirian RA, Aquila A, Hunter MS, Schulz J, DePonte DP, Weierstall U, Doak RB, Maia FR, Martin AV, Schlichting I, Lomb L, Coppola N, Shoeman RL, Epp SW, Hartmann R, Rolles D, Rudenko A, Foucar L, Kimmel N, Weidenspointner G, Holl P, Liang M, Barthelmess M, Caleman C, Boutet S, Bogan MJ, Krzywinski J, Bostedt C, Bajt S, Gumprecht L, Rudek B, Erk B, Schmidt C, Hömke A, Reich C, Pietschner D, Strüder L, Hauser G, Gorke H, Ullrich J, Herrmann S, Schaller G, Schopper F, Soltau H, Kühnel KU, Messerschmidt M, Bozek JD, Hau-Riege SP, Frank M, Hampton CY, Sierra RG, Starodub D, Williams GJ, Hajdu J, Timneanu N, Seibert MM, Andreasson J, Rocker A, Jönsson O, Svenda M, Stern S, Nass K, Andritschke R, Schröter CD, Krasniqi F, Bott M, Schmidt KE, Wang X, Grotjohann I, Holton JM, Barends TR, Neutze R, Marchesini S, Fromme R, Schorb S, Rupp D, Adolph M, Gorkhover T, Andersson I, Hirsemann H, Potdevin G, Graafsma H, Nilsson B, Spence JC.

Nature. 2011 Feb 3;470(7332):73-7. doi: 10.1038/nature09750.

25.

Single particle X-ray diffractive imaging.

Bogan MJ, Benner WH, Boutet S, Rohner U, Frank M, Barty A, Seibert MM, Maia F, Marchesini S, Bajt S, Woods B, Riot V, Hau-Riege SP, Svenda M, Marklund E, Spiller E, Hajdu J, Chapman HN.

Nano Lett. 2008 Jan;8(1):310-6. Epub 2007 Dec 21.

PMID:
18095739
26.

Insights into cephamycin biosynthesis: the crystal structure of CmcI from Streptomyces clavuligerus.

Oster LM, Lester DR, Terwisscha van Scheltinga A, Svenda M, van Lun M, Généreux C, Andersson I.

J Mol Biol. 2006 Apr 28;358(2):546-58. Epub 2006 Feb 21.

PMID:
16527306
27.

Expression, purification, crystallization and preliminary X-ray diffraction studies of the cmcI component of Streptomyces clavuligerus 7alpha-cephem-methoxylase.

Lester DR, Oster LM, Svenda M, Andersson I.

Acta Crystallogr D Biol Crystallogr. 2004 Sep;60(Pt 9):1618-21. Epub 2004 Aug 26.

PMID:
15333935
28.
29.

Uptake of porcine rubulavirus (LPMV) by PK-15 cells.

Hernández-Jáuregui P, Yacoub A, Kennedy S, Curran B, Téllez C, Svenda M, Ljung L, Moreno-López J.

Arch Med Res. 2001 Sep-Oct;32(5):400-9.

PMID:
11578755
30.

Development of a blocking ELISA for screening antibodies to porcine rubulavirus, La Piedad Michoacan Virus.

Nordengrahn A, Svenda M, Moreno-Lopez J, Bergvall A, Hernandez P, McNeilly F, Allan G, Merza M.

J Vet Diagn Invest. 1999 Jul;11(4):319-23.

PMID:
10424646
31.
32.

Analysis of the large (L) protein gene of the porcine rubulavirus LPMV: identification of possible functional domains.

Svenda M, Berg M, Moreno-López J, Linné T.

Virus Res. 1997 Apr;48(1):57-70.

PMID:
9140194
33.

Analysis of the fusion protein gene of the porcine rubulavirus LPMV: comparative analysis of paramyxovirus F proteins.

Berg M, Bergvall AC, Svenda M, Sundqvist A, Moreno-López J, Linné T.

Virus Genes. 1997;14(1):55-61.

PMID:
9208455

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