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Items: 18

1.

Population-wide copy number variation calling using variant call format files from 6,898 individuals.

Png G, Suveges D, Park YC, Walter K, Kundu K, Ntalla I, Tsafantakis E, Karaleftheri M, Dedoussis G, Zeggini E, Gilly A.

Genet Epidemiol. 2019 Sep 14. doi: 10.1002/gepi.22260. [Epub ahead of print]

PMID:
31520489
2.

Identification of new therapeutic targets for osteoarthritis through genome-wide analyses of UK Biobank data.

Tachmazidou I, Hatzikotoulas K, Southam L, Esparza-Gordillo J, Haberland V, Zheng J, Johnson T, Koprulu M, Zengini E, Steinberg J, Wilkinson JM, Bhatnagar S, Hoffman JD, Buchan N, Süveges D; arcOGEN Consortium, Yerges-Armstrong L, Smith GD, Gaunt TR, Scott RA, McCarthy LC, Zeggini E.

Nat Genet. 2019 Feb;51(2):230-236. doi: 10.1038/s41588-018-0327-1. Epub 2019 Jan 21.

3.

Very low-depth whole-genome sequencing in complex trait association studies.

Gilly A, Southam L, Suveges D, Kuchenbaecker K, Moore R, Melloni GEM, Hatzikotoulas K, Farmaki AE, Ritchie G, Schwartzentruber J, Danecek P, Kilian B, Pollard MO, Ge X, Tsafantakis E, Dedoussis G, Zeggini E.

Bioinformatics. 2019 Aug 1;35(15):2555-2561. doi: 10.1093/bioinformatics/bty1032.

4.

Author Correction: Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Gilly A, Suveges D, Kuchenbaecker K, Pollard M, Southam L, Hatzikotoulas K, Farmaki AE, Bjornland T, Waples R, Appel EVR, Casalone E, Melloni G, Kilian B, Rayner NW, Ntalla I, Kundu K, Walter K, Danesh J, Butterworth A, Barroso I, Tsafantakis E, Dedoussis G, Moltke I, Zeggini E.

Nat Commun. 2018 Dec 19;9(1):5460. doi: 10.1038/s41467-018-07730-9.

5.

The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.

Buniello A, MacArthur JAL, Cerezo M, Harris LW, Hayhurst J, Malangone C, McMahon A, Morales J, Mountjoy E, Sollis E, Suveges D, Vrousgou O, Whetzel PL, Amode R, Guillen JA, Riat HS, Trevanion SJ, Hall P, Junkins H, Flicek P, Burdett T, Hindorff LA, Cunningham F, Parkinson H.

Nucleic Acids Res. 2019 Jan 8;47(D1):D1005-D1012. doi: 10.1093/nar/gky1120.

6.

Cohort-wide deep whole genome sequencing and the allelic architecture of complex traits.

Gilly A, Suveges D, Kuchenbaecker K, Pollard M, Southam L, Hatzikotoulas K, Farmaki AE, Bjornland T, Waples R, Appel EVR, Casalone E, Melloni G, Kilian B, Rayner NW, Ntalla I, Kundu K, Walter K, Danesh J, Butterworth A, Barroso I, Tsafantakis E, Dedoussis G, Moltke I, Zeggini E.

Nat Commun. 2018 Nov 7;9(1):4674. doi: 10.1038/s41467-018-07070-8. Erratum in: Nat Commun. 2018 Dec 19;9(1):5460.

7.

Genome-wide analyses using UK Biobank data provide insights into the genetic architecture of osteoarthritis.

Zengini E, Hatzikotoulas K, Tachmazidou I, Steinberg J, Hartwig FP, Southam L, Hackinger S, Boer CG, Styrkarsdottir U, Gilly A, Suveges D, Killian B, Ingvarsson T, Jonsson H, Babis GC, McCaskie A, Uitterlinden AG, van Meurs JBJ, Thorsteinsdottir U, Stefansson K, Davey Smith G, Wilkinson JM, Zeggini E.

Nat Genet. 2018 Apr;50(4):549-558. doi: 10.1038/s41588-018-0079-y. Epub 2018 Mar 20.

8.

A novel variant in GLIS3 is associated with osteoarthritis.

Casalone E, Tachmazidou I, Zengini E, Hatzikotoulas K, Hackinger S, Suveges D, Steinberg J, Rayner NW; arcOGEN Consortium, Wilkinson JM, Panoutsopoulou K, Zeggini E.

Ann Rheum Dis. 2018 Apr;77(4):620-623. doi: 10.1136/annrheumdis-2017-211848. Epub 2018 Feb 7.

9.

Loss-of-function variants in ADCY3 increase risk of obesity and type 2 diabetes.

Grarup N, Moltke I, Andersen MK, Dalby M, Vitting-Seerup K, Kern T, Mahendran Y, Jørsboe E, Larsen CVL, Dahl-Petersen IK, Gilly A, Suveges D, Dedoussis G, Zeggini E, Pedersen O, Andersson R, Bjerregaard P, Jørgensen ME, Albrechtsen A, Hansen T.

Nat Genet. 2018 Feb;50(2):172-174. doi: 10.1038/s41588-017-0022-7. Epub 2018 Jan 8.

10.

Whole-Genome Sequencing Coupled to Imputation Discovers Genetic Signals for Anthropometric Traits.

Tachmazidou I, Süveges D, Min JL, Ritchie GRS, Steinberg J, Walter K, Iotchkova V, Schwartzentruber J, Huang J, Memari Y, McCarthy S, Crawford AA, Bombieri C, Cocca M, Farmaki AE, Gaunt TR, Jousilahti P, Kooijman MN, Lehne B, Malerba G, Männistö S, Matchan A, Medina-Gomez C, Metrustry SJ, Nag A, Ntalla I, Paternoster L, Rayner NW, Sala C, Scott WR, Shihab HA, Southam L, St Pourcain B, Traglia M, Trajanoska K, Zaza G, Zhang W, Artigas MS, Bansal N, Benn M, Chen Z, Danecek P, Lin WY, Locke A, Luan J, Manning AK, Mulas A, Sidore C, Tybjaerg-Hansen A, Varbo A, Zoledziewska M, Finan C, Hatzikotoulas K, Hendricks AE, Kemp JP, Moayyeri A, Panoutsopoulou K, Szpak M, Wilson SG, Boehnke M, Cucca F, Di Angelantonio E, Langenberg C, Lindgren C, McCarthy MI, Morris AP, Nordestgaard BG, Scott RA, Tobin MD, Wareham NJ; SpiroMeta Consortium; GoT2D Consortium, Burton P, Chambers JC, Smith GD, Dedoussis G, Felix JF, Franco OH, Gambaro G, Gasparini P, Hammond CJ, Hofman A, Jaddoe VWV, Kleber M, Kooner JS, Perola M, Relton C, Ring SM, Rivadeneira F, Salomaa V, Spector TD, Stegle O, Toniolo D, Uitterlinden AG; arcOGEN Consortium; Understanding Society Scientific Group; UK10K Consortium, Barroso I, Greenwood CMT, Perry JRB, Walker BR, Butterworth AS, Xue Y, Durbin R, Small KS, Soranzo N, Timpson NJ, Zeggini E.

Am J Hum Genet. 2017 Jun 1;100(6):865-884. doi: 10.1016/j.ajhg.2017.04.014. Epub 2017 May 25.

11.

Whole genome sequencing and imputation in isolated populations identify genetic associations with medically-relevant complex traits.

Southam L, Gilly A, Süveges D, Farmaki AE, Schwartzentruber J, Tachmazidou I, Matchan A, Rayner NW, Tsafantakis E, Karaleftheri M, Xue Y, Dedoussis G, Zeggini E.

Nat Commun. 2017 May 26;8:15606. doi: 10.1038/ncomms15606.

12.

Charged single alpha-helices in proteomes revealed by a consensus prediction approach.

Gáspári Z, Süveges D, Perczel A, Nyitray L, Tóth G.

Biochim Biophys Acta. 2012 Apr;1824(4):637-46. doi: 10.1016/j.bbapap.2012.01.012. Epub 2012 Jan 28.

PMID:
22310480
13.

Directed evolution reveals the binding motif preference of the LC8/DYNLL hub protein and predicts large numbers of novel binders in the human proteome.

Rapali P, Radnai L, Süveges D, Harmat V, Tölgyesi F, Wahlgren WY, Katona G, Nyitray L, Pál G.

PLoS One. 2011 Apr 18;6(4):e18818. doi: 10.1371/journal.pone.0018818.

14.

Affinity, avidity, and kinetics of target sequence binding to LC8 dynein light chain isoforms.

Radnai L, Rapali P, Hódi Z, Süveges D, Molnár T, Kiss B, Bécsi B, Erdödi F, Buday L, Kardos J, Kovács M, Nyitray L.

J Biol Chem. 2010 Dec 3;285(49):38649-57. doi: 10.1074/jbc.M110.165894. Epub 2010 Oct 2.

15.

Folded-unfolded cross-predictions and protein evolution: the case study of coiled-coils.

Szappanos B, Süveges D, Nyitray L, Perczel A, Gáspári Z.

FEBS Lett. 2010 Apr 16;584(8):1623-7. doi: 10.1016/j.febslet.2010.03.026. Epub 2010 Mar 19.

16.

Charged single alpha-helix: a versatile protein structural motif.

Süveges D, Gáspári Z, Tóth G, Nyitray L.

Proteins. 2009 Mar;74(4):905-16. doi: 10.1002/prot.22183.

PMID:
18712826
17.

An unstable head-rod junction may promote folding into the compact off-state conformation of regulated myosins.

Brown JH, Yang Y, Reshetnikova L, Gourinath S, Süveges D, Kardos J, Hóbor F, Reutzel R, Nyitray L, Cohen C.

J Mol Biol. 2008 Feb 1;375(5):1434-43. Epub 2007 Nov 28.

18.

[A computerized follow up system of obstetric and genetic care].

Papp Z, Süveges D, Szabó G, Kámán A, Papp C, Tóth-Pál E, Takács L.

Orv Hetil. 1990 Apr 14;131(15):803-6. Hungarian.

PMID:
2326065

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