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Items: 1 to 50 of 801

1.

OMeta: an ontology-based, data-driven metadata tracking system.

Singh I, Kuscuoglu M, Harkins DM, Sutton G, Fouts DE, Nelson KE.

BMC Bioinformatics. 2019 Jan 7;20(1):8. doi: 10.1186/s12859-018-2580-9.

2.

Exopolymeric substances (EPS) from Salmonella enterica: polymers, proteins and their interactions with plants and abiotic surfaces.

Maruzani R, Sutton G, Nocerino P, Marvasi M.

J Microbiol. 2019 Jan;57(1):1-8. doi: 10.1007/s12275-019-8353-y. Epub 2018 Sep 6. Review.

PMID:
30552630
4.

A novel approach to eliminate therapy-resistant mantle cell lymphoma: synergistic effects of Vorinostat with Palbociclib.

Chaturvedi NK, Hatch ND, Sutton GL, Kling M, Vose JM, Joshi SS.

Leuk Lymphoma. 2018 Nov 14:1-10. doi: 10.1080/10428194.2018.1520986. [Epub ahead of print]

PMID:
30424705
5.

InterPro in 2019: improving coverage, classification and access to protein sequence annotations.

Mitchell AL, Attwood TK, Babbitt PC, Blum M, Bork P, Bridge A, Brown SD, Chang HY, El-Gebali S, Fraser MI, Gough J, Haft DR, Huang H, Letunic I, Lopez R, Luciani A, Madeira F, Marchler-Bauer A, Mi H, Natale DA, Necci M, Nuka G, Orengo C, Pandurangan AP, Paysan-Lafosse T, Pesseat S, Potter SC, Qureshi MA, Rawlings ND, Redaschi N, Richardson LJ, Rivoire C, Salazar GA, Sangrador-Vegas A, Sigrist CJA, Sillitoe I, Sutton GG, Thanki N, Thomas PD, Tosatto SCE, Yong SY, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D351-D360. doi: 10.1093/nar/gky1100.

6.

Genome properties in 2019: a new companion database to InterPro for the inference of complete functional attributes.

Richardson LJ, Rawlings ND, Salazar GA, Almeida A, Haft DR, Ducq G, Sutton GG, Finn RD.

Nucleic Acids Res. 2019 Jan 8;47(D1):D564-D572. doi: 10.1093/nar/gky1013.

7.

Large-Scale Comparative Analysis of Microbial Pan-genomes using PanOCT.

Inman JM, Sutton GG, Beck E, Brinkac LM, Clarke TH, Fouts DE.

Bioinformatics. 2018 Aug 25. doi: 10.1093/bioinformatics/bty744. [Epub ahead of print]

PMID:
30165579
8.

Characterization of the AmpC β-Lactamase from Burkholderia multivorans.

Becka SA, Zeiser ET, Barnes MD, Taracila MA, Nguyen K, Singh I, Sutton GG, LiPuma JJ, Fouts DE, Papp-Wallace KM.

Antimicrob Agents Chemother. 2018 Sep 24;62(10). pii: e01140-18. doi: 10.1128/AAC.01140-18. Print 2018 Oct.

PMID:
30012762
9.

Visual Outcomes and Higher Order Aberrations Following LASIK on Eyes with Low Myopia and Astigmatism.

Agarwal S, Thornell E, Hodge C, Sutton G, Hughes P.

Open Ophthalmol J. 2018 May 31;12:84-93. doi: 10.2174/1874364101812010084. eCollection 2018.

10.

Sequence heterogeneity of the PenA carbapenemase in clinical isolates of Burkholderia multivorans.

Becka SA, Zeiser ET, Marshall SH, Gatta JA, Nguyen K, Singh I, Greco C, Sutton GG, Fouts DE, LiPuma JJ, Papp-Wallace KM.

Diagn Microbiol Infect Dis. 2018 Nov;92(3):253-258. doi: 10.1016/j.diagmicrobio.2018.06.005. Epub 2018 Jun 18.

11.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Jul 6;36(7):660. doi: 10.1038/nbt0718-660a. No abstract available.

PMID:
29979671
12.

PanACEA: a bioinformatics tool for the exploration and visualization of bacterial pan-chromosomes.

Clarke TH, Brinkac LM, Inman JM, Sutton G, Fouts DE.

BMC Bioinformatics. 2018 Jun 27;19(1):246. doi: 10.1186/s12859-018-2250-y.

13.

Crystal structures of 2,4,6-tri-iodo-benzo-nitrile and 2,4,6-tri-iodo-phenyl isocyanide.

Noland WE, Britton D, Sutton GK, Schneerer AK, Tritch KJ.

Acta Crystallogr E Crystallogr Commun. 2018 Jan 9;74(Pt 2):98-102. doi: 10.1107/S2056989017018217. eCollection 2018 Feb 1.

14.

A draft genome sequence for the Ixodes scapularis cell line, ISE6.

Miller JR, Koren S, Dilley KA, Harkins DM, Stockwell TB, Shabman RS, Sutton GG.

F1000Res. 2018 Mar 8;7:297. doi: 10.12688/f1000research.13635.1. eCollection 2018.

15.

The principles of cascading power limits in small, fast biological and engineered systems.

Ilton M, Bhamla MS, Ma X, Cox SM, Fitchett LL, Kim Y, Koh JS, Krishnamurthy D, Kuo CY, Temel FZ, Crosby AJ, Prakash M, Sutton GP, Wood RJ, Azizi E, Bergbreiter S, Patek SN.

Science. 2018 Apr 27;360(6387). pii: eaao1082. doi: 10.1126/science.aao1082.

PMID:
29700237
16.

GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models.

Clarke TH, Brinkac LM, Sutton G, Fouts DE.

Bioinformatics. 2018 Sep 1;34(17):3032-3034. doi: 10.1093/bioinformatics/bty300.

17.

Spatiotemporal heterogeneity and patterning of developing renal blood vessels.

Daniel E, Azizoglu DB, Ryan AR, Walji TA, Chaney CP, Sutton GI, Carroll TJ, Marciano DK, Cleaver O.

Angiogenesis. 2018 Aug;21(3):617-634. doi: 10.1007/s10456-018-9612-y. Epub 2018 Apr 7.

PMID:
29627966
18.

Infanticide in a mammal-eating killer whale population.

Towers JR, Hallé MJ, Symonds HK, Sutton GJ, Morton AB, Spong P, Borrowman JP, Ford JKB.

Sci Rep. 2018 Mar 20;8(1):4366. doi: 10.1038/s41598-018-22714-x.

19.

Towards in cellulo virus crystallography.

Duyvesteyn HME, Ginn HM, Pietilä MK, Wagner A, Hattne J, Grimes JM, Hirvonen E, Evans G, Parsy ML, Sauter NK, Brewster AS, Huiskonen JT, Stuart DI, Sutton G, Bamford DH.

Sci Rep. 2018 Feb 28;8(1):3771. doi: 10.1038/s41598-018-21693-3.

20.

Insect jumping springs.

Sutton GP, Burrows M.

Curr Biol. 2018 Feb 19;28(4):R142-R143. doi: 10.1016/j.cub.2017.11.051.

PMID:
29462575
21.

Corrigendum: Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2018 Feb 6;36(2):196. doi: 10.1038/nbt0218-196a. No abstract available.

22.

In-Vitro Effects of Secreted Frizzled-Related Protein 1 (SFRP1) On Human Corneal Epithelial Cells.

You J, Munoz-Erazo L, Wen L, Hodge C, Madigan MC, Sutton G.

Curr Eye Res. 2018 Apr;43(4):455-459. doi: 10.1080/02713683.2018.1431284. Epub 2018 Jan 30.

PMID:
29381095
23.

Analysis of the Aedes albopictus C6/36 genome provides insight into cell line utility for viral propagation.

Miller JR, Koren S, Dilley KA, Puri V, Brown DM, Harkins DM, Thibaud-Nissen F, Rosen B, Chen XG, Tu Z, Sharakhov IV, Sharakhova MV, Sebra R, Stockwell TB, Bergman NH, Sutton GG, Phillippy AM, Piermarini PM, Shabman RS.

Gigascience. 2018 Mar 1;7(3):1-13. doi: 10.1093/gigascience/gix135.

24.

RNA-Seq analysis and comparison of corneal epithelium in keratoconus and myopia patients.

You J, Corley SM, Wen L, Hodge C, Höllhumer R, Madigan MC, Wilkins MR, Sutton G.

Sci Rep. 2018 Jan 10;8(1):389. doi: 10.1038/s41598-017-18480-x.

25.

Biomaterials for corneal bioengineering.

Chen Z, You J, Liu X, Cooper S, Hodge C, Sutton G, Crook JM, Wallace GG.

Biomed Mater. 2018 Mar 6;13(3):032002. doi: 10.1088/1748-605X/aa92d2.

PMID:
29021411
26.

Strain Level Streptococcus Colonization Patterns during the First Year of Life.

Wright MS, McCorrison J, Gomez AM, Beck E, Harkins D, Shankar J, Mounaud S, Segubre-Mercado E, Mojica AMR, Bacay B, Nzenze SA, Kimaro SZM, Adrian P, Klugman KP, Lucero MG, Nelson KE, Madhi S, Sutton GG, Nierman WC, Losada L.

Front Microbiol. 2017 Sep 6;8:1661. doi: 10.3389/fmicb.2017.01661. eCollection 2017.

27.

Departure time influences foraging associations in little penguins.

Sutton GJ, Hoskins AJ, Berlincourt M, Arnould JPY.

PLoS One. 2017 Aug 23;12(8):e0182734. doi: 10.1371/journal.pone.0182734. eCollection 2017.

28.

DNA methylation-independent growth restriction and altered developmental programming in a mouse model of preconception male alcohol exposure.

Chang RC, Skiles WM, Chronister SS, Wang H, Sutton GI, Bedi YS, Snyder M, Long CR, Golding MC.

Epigenetics. 2017;12(10):841-853. doi: 10.1080/15592294.2017.1363952. Epub 2017 Dec 7.

29.

Erratum to: Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species.

Pearce SL, Clarke DF, East PD, Elfekih S, Gordon KHJ, Jermiin LS, McGaughran A, Oakeshott JG, Papanicolaou A, Perera OP, Rane RV, Richards S, Tay WT, Walsh TK, Anderson A, Anderson CJ, Asgari S, Board PG, Bretschneider A, Campbell PM, Chertemps T, Christeller JT, Coppin CW, Downes SJ, Duan G, Farnsworth CA, Good RT, Han LB, Han YC, Hatje K, Horne I, Huang YP, Hughes DST, Jacquin-Joly E, James W, Jhangiani S, Kollmar M, Kuwar SS, Li S, Liu NY, Maibeche MT, Miller JR, Montagne N, Perry T, Qu J, Song SV, Sutton GG, Vogel H, Walenz BP, Xu W, Zhang HJ, Zou Z, Batterham P, Edwards OR, Feyereisen R, Gibbs RA, Heckel DG, McGrath A, Robin C, Scherer SE, Worley KC, Wu YD.

BMC Biol. 2017 Aug 15;15(1):69. doi: 10.1186/s12915-017-0413-3. No abstract available.

30.

Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

Bowers RM, Kyrpides NC, Stepanauskas R, Harmon-Smith M, Doud D, Reddy TBK, Schulz F, Jarett J, Rivers AR, Eloe-Fadrosh EA, Tringe SG, Ivanova NN, Copeland A, Clum A, Becraft ED, Malmstrom RR, Birren B, Podar M, Bork P, Weinstock GM, Garrity GM, Dodsworth JA, Yooseph S, Sutton G, Glöckner FO, Gilbert JA, Nelson WC, Hallam SJ, Jungbluth SP, Ettema TJG, Tighe S, Konstantinidis KT, Liu WT, Baker BJ, Rattei T, Eisen JA, Hedlund B, McMahon KD, Fierer N, Knight R, Finn R, Cochrane G, Karsch-Mizrachi I, Tyson GW, Rinke C; Genome Standards Consortium, Lapidus A, Meyer F, Yilmaz P, Parks DH, Eren AM, Schriml L, Banfield JF, Hugenholtz P, Woyke T.

Nat Biotechnol. 2017 Aug 8;35(8):725-731. doi: 10.1038/nbt.3893.

PMID:
28787424
31.

Comparison of Hill-radial basis function, Barrett Universal and current third generation formulas for the calculation of intraocular lens power during cataract surgery.

Roberts TV, Hodge C, Sutton G, Lawless M; contributors to the Vision Eye Institute IOL outcomes registry.

Clin Exp Ophthalmol. 2018 Apr;46(3):240-246. doi: 10.1111/ceo.13034. Epub 2017 Aug 31.

PMID:
28778114
32.

Genomic innovations, transcriptional plasticity and gene loss underlying the evolution and divergence of two highly polyphagous and invasive Helicoverpa pest species.

Pearce SL, Clarke DF, East PD, Elfekih S, Gordon KHJ, Jermiin LS, McGaughran A, Oakeshott JG, Papanicolaou A, Perera OP, Rane RV, Richards S, Tay WT, Walsh TK, Anderson A, Anderson CJ, Asgari S, Board PG, Bretschneider A, Campbell PM, Chertemps T, Christeller JT, Coppin CW, Downes SJ, Duan G, Farnsworth CA, Good RT, Han LB, Han YC, Hatje K, Horne I, Huang YP, Hughes DST, Jacquin-Joly E, James W, Jhangiani S, Kollmar M, Kuwar SS, Li S, Liu NY, Maibeche MT, Miller JR, Montagne N, Perry T, Qu J, Song SV, Sutton GG, Vogel H, Walenz BP, Xu W, Zhang HJ, Zou Z, Batterham P, Edwards OR, Feyereisen R, Gibbs RA, Heckel DG, McGrath A, Robin C, Scherer SE, Worley KC, Wu YD.

BMC Biol. 2017 Jul 31;15(1):63. doi: 10.1186/s12915-017-0402-6. Erratum in: BMC Biol. 2017 Aug 15;15(1):69.

33.

Initial genome sequencing of the sugarcane CP 96-1252 complex hybrid.

Miller JR, Dilley KA, Harkins DM, Torralba MG, Moncera KJ, Beeri K, Goglin K, Stockwell TB, Sutton GG, Shabman RS.

F1000Res. 2017 May 17;6:688. doi: 10.12688/f1000research.11629.1. eCollection 2017.

34.

Daboia (Vipera) palaestinae envenomation in horses: Clinical and hematological signs, risk factors for mortality and construction of a novel severity scoring system.

Tirosh-Levy S, Solomovich R, Comte J, Sutton GA, Steinman A.

Toxicon. 2017 Oct;137:58-64. doi: 10.1016/j.toxicon.2017.07.007. Epub 2017 Jul 8.

PMID:
28698056
35.

High-speed fixed-target serial virus crystallography.

Roedig P, Ginn HM, Pakendorf T, Sutton G, Harlos K, Walter TS, Meyer J, Fischer P, Duman R, Vartiainen I, Reime B, Warmer M, Brewster AS, Young ID, Michels-Clark T, Sauter NK, Kotecha A, Kelly J, Rowlands DJ, Sikorsky M, Nelson S, Damiani DS, Alonso-Mori R, Ren J, Fry EE, David C, Stuart DI, Wagner A, Meents A.

Nat Methods. 2017 Aug;14(8):805-810. doi: 10.1038/nmeth.4335. Epub 2017 Jun 19.

36.

Jumping without slipping: leafhoppers (Hemiptera: Cicadellidae) possess special tarsal structures for jumping from smooth surfaces.

Clemente CJ, Goetzke HH, Bullock JMR, Sutton GP, Burrows M, Federle W.

J R Soc Interface. 2017 May;14(130). pii: 20170022. doi: 10.1098/rsif.2017.0022.

37.

Corneal Collagen Crosslinking for Post-LASIK Ectasia: An Australian Study.

Tong JY, Viswanathan D, Hodge C, Sutton G, Chan C, Males JJ.

Asia Pac J Ophthalmol (Phila). 2017 May-Jun;6(3):228-232. doi: 10.22608/APO.2016197. Epub 2017 Mar 29.

38.

MICE or NICE? An economic evaluation of clinical decision rules in the diagnosis of heart failure in primary care.

Monahan M, Barton P, Taylor CJ, Roalfe AK, Hobbs FDR; REFER investigators, Cowie M, Davis R, Deeks J, Mant J, McCahon D, McDonagh T, Sutton G, Tait L.

Int J Cardiol. 2017 Aug 15;241:255-261. doi: 10.1016/j.ijcard.2017.02.149. Epub 2017 Mar 2.

39.

Analysis of the learning curve for pre-cut corneal specimens in preparation for lamellar transplantation: a prospective, single-centre, consecutive case series prepared at the Lions New South Wales Eye Bank.

Martin AI, Devasahayam R, Hodge C, Cooper S, Sutton GL.

Clin Exp Ophthalmol. 2017 Sep;45(7):689-694. doi: 10.1111/ceo.12941. Epub 2017 Mar 21.

PMID:
28263034
40.

LOCUST: a custom sequence locus typer for classifying microbial isolates.

Brinkac LM, Beck E, Inman J, Venepally P, Fouts DE, Sutton G.

Bioinformatics. 2017 Jun 1;33(11):1725-1726. doi: 10.1093/bioinformatics/btx045.

41.

Comprehensive Genome Analysis of Carbapenemase-Producing Enterobacter spp.: New Insights into Phylogeny, Population Structure, and Resistance Mechanisms.

Chavda KD, Chen L, Fouts DE, Sutton G, Brinkac L, Jenkins SG, Bonomo RA, Adams MD, Kreiswirth BN.

MBio. 2016 Dec 13;7(6). pii: e02093-16. doi: 10.1128/mBio.02093-16.

42.

Primary care REFerral for EchocaRdiogram (REFER) in heart failure: a diagnostic accuracy study.

Taylor CJ, Roalfe AK, Iles R, Hobbs FR; REFER investigators, Barton P, Deeks J, McCahon D, Cowie MR, Sutton G, Davis RC, Mant J, McDonagh T, Tait L.

Br J Gen Pract. 2017 Feb;67(655):e94-e102. doi: 10.3399/bjgp16X688393. Epub 2016 Dec 5.

44.

InterPro in 2017-beyond protein family and domain annotations.

Finn RD, Attwood TK, Babbitt PC, Bateman A, Bork P, Bridge AJ, Chang HY, Dosztányi Z, El-Gebali S, Fraser M, Gough J, Haft D, Holliday GL, Huang H, Huang X, Letunic I, Lopez R, Lu S, Marchler-Bauer A, Mi H, Mistry J, Natale DA, Necci M, Nuka G, Orengo CA, Park Y, Pesseat S, Piovesan D, Potter SC, Rawlings ND, Redaschi N, Richardson L, Rivoire C, Sangrador-Vegas A, Sigrist C, Sillitoe I, Smithers B, Squizzato S, Sutton G, Thanki N, Thomas PD, Tosatto SC, Wu CH, Xenarios I, Yeh LS, Young SY, Mitchell AL.

Nucleic Acids Res. 2017 Jan 4;45(D1):D190-D199. doi: 10.1093/nar/gkw1107. Epub 2016 Nov 29.

45.

The use of donor scleral patch in ophthalmic surgery.

Hodge C, Sutton G, Devasahayam R, Georges P, Treloggen J, Cooper S, Petsoglou C.

Cell Tissue Bank. 2017 Mar;18(1):119-128. doi: 10.1007/s10561-016-9603-4. Epub 2016 Nov 23. Review.

PMID:
27878655
46.

Intraindividual variability and falls in older adults.

Bauermeister S, Sutton G, Mon-Williams M, Wilkie R, Graveson J, Cracknell A, Wilkinson C, Holt R, Bunce D.

Neuropsychology. 2017 Jan;31(1):20-27. doi: 10.1037/neu0000328. Epub 2016 Nov 10.

47.

Update and clinical utility of the LenSx femtosecond laser in cataract surgery.

Roberts TV, Lawless M, Sutton G, Hodge C.

Clin Ophthalmol. 2016 Oct 17;10:2021-2029. eCollection 2016. Review.

48.

Chromosome conformation elucidates regulatory relationships in developing human brain.

Won H, de la Torre-Ubieta L, Stein JL, Parikshak NN, Huang J, Opland CK, Gandal MJ, Sutton GJ, Hormozdiari F, Lu D, Lee C, Eskin E, Voineagu I, Ernst J, Geschwind DH.

Nature. 2016 Oct 27;538(7626):523-527. doi: 10.1038/nature19847. Epub 2016 Oct 19.

49.

Searching for convergent pathways in autism spectrum disorders: insights from human brain transcriptome studies.

Gokoolparsadh A, Sutton GJ, Charamko A, Green NF, Pardy CJ, Voineagu I.

Cell Mol Life Sci. 2016 Dec;73(23):4517-4530. Epub 2016 Jul 12. Review.

PMID:
27405608
50.

Muscle-spring dynamics in time-limited, elastic movements.

Rosario MV, Sutton GP, Patek SN, Sawicki GS.

Proc Biol Sci. 2016 Sep 14;283(1838). pii: 20161561. doi: 10.1098/rspb.2016.1561.

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