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Items: 1 to 50 of 112

1.

Endangered wild salmon infected by newly discovered viruses.

Mordecai GJ, Miller KM, Di Cicco E, Schulze AD, Kaukinen KH, Ming TJ, Li S, Tabata A, Teffer A, Patterson DA, Ferguson HW, Suttle CA.

Elife. 2019 Sep 3;8. pii: e47615. doi: 10.7554/eLife.47615.

2.

Chromulinavorax destructans, a pathogen of microzooplankton that provides a window into the enigmatic candidate phylum Dependentiae.

Deeg CM, Zimmer MM, George EE, Husnik F, Keeling PJ, Suttle CA.

PLoS Pathog. 2019 May 31;15(5):e1007801. doi: 10.1371/journal.ppat.1007801. eCollection 2019 May.

3.

Distribution and Phylogeny of Erythrocytic Necrosis Virus (ENV) in Salmon Suggests Marine Origin.

Pagowski VA, Mordecai GJ, Miller KM, Schulze AD, Kaukinen KH, Ming TJ, Li S, Teffer AK, Tabata A, Suttle CA.

Viruses. 2019 Apr 18;11(4). pii: E358. doi: 10.3390/v11040358.

4.

Marine RNA Virus Quasispecies Are Distributed throughout the Oceans.

Vlok M, Lang AS, Suttle CA.

mSphere. 2019 Apr 3;4(2). pii: e00157-19. doi: 10.1128/mSphereDirect.00157-19.

5.

Metagenomes of a Freshwater Charavirus from British Columbia Provide a Window into Ancient Lineages of Viruses.

Vlok M, Gibbs AJ, Suttle CA.

Viruses. 2019 Mar 25;11(3). pii: E299. doi: 10.3390/v11030299.

6.

Active and diverse viruses persist in the deep sub-seafloor sediments over thousands of years.

Cai L, Jørgensen BB, Suttle CA, He M, Cragg BA, Jiao N, Zhang R.

ISME J. 2019 Jul;13(7):1857-1864. doi: 10.1038/s41396-019-0397-9. Epub 2019 Mar 15.

PMID:
30877284
7.

VHost-Classifier: Virus-Host Classification using natural language processing.

Kitson E, Suttle CA.

Bioinformatics. 2019 Mar 1. pii: btz151. doi: 10.1093/bioinformatics/btz151. [Epub ahead of print]

PMID:
30824917
8.

The Environment and Cyanophage Diversity: Insights From Environmental Sequencing of DNA Polymerase.

Finke JF, Suttle CA.

Front Microbiol. 2019 Feb 8;10:167. doi: 10.3389/fmicb.2019.00167. eCollection 2019.

9.

The Complete Genome and Physiological Analysis of the Eurythermal Firmicute Exiguobacterium chiriqhucha Strain RW2 Isolated From a Freshwater Microbialite, Widely Adaptable to Broad Thermal, pH, and Salinity Ranges.

White RA 3rd, Soles SA, Gavelis G, Gosselin E, Slater GF, Lim DSS, Leander B, Suttle CA.

Front Microbiol. 2019 Jan 8;9:3189. doi: 10.3389/fmicb.2018.03189. eCollection 2018.

10.

Author Correction: A compendium of geochemical information from the Saanich Inlet water column.

Torres-Beltrán M, Hawley AK, Capelle D, Zaikova E, Walsh DA, Mueller A, Scofield M, Payne C, Pakhomova L, Kheirandish S, Finke J, Bhatia M, Shevchuk O, Gies EA, Fairley D, Michiels C, Suttle CA, Whitney F, Crowe SA, Tortell PD, Hallam SJ.

Sci Data. 2019 Jan 15;6(1):1. doi: 10.1038/s41597-018-0005-2.

11.

Minimum Information about an Uncultivated Virus Genome (MIUViG).

Roux S, Adriaenssens EM, Dutilh BE, Koonin EV, Kropinski AM, Krupovic M, Kuhn JH, Lavigne R, Brister JR, Varsani A, Amid C, Aziz RK, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonté JM, Lee KB, Malmstrom RR, Martinez-Garcia M, Mizrachi IK, Ogata H, Páez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle CA, Temperton B, Tringe SG, Thurber RV, Webster NS, Whiteson KL, Wilhelm SW, Wommack KE, Woyke T, Wrighton KC, Yilmaz P, Yoshida T, Young MJ, Yutin N, Allen LZ, Kyrpides NC, Eloe-Fadrosh EA.

Nat Biotechnol. 2019 Jan;37(1):29-37. doi: 10.1038/nbt.4306. Epub 2018 Dec 17.

PMID:
30556814
12.

The Complete Genome and Physiological Analysis of the Microbialite-Dwelling Agrococcus pavilionensis sp. nov; Reveals Genetic Promiscuity and Predicted Adaptations to Environmental Stress.

White RA 3rd, Gavelis G, Soles SA, Gosselin E, Slater GF, Lim DSS, Leander B, Suttle CA.

Front Microbiol. 2018 Oct 15;9:2180. doi: 10.3389/fmicb.2018.02180. eCollection 2018.

13.

A New Freshwater Cyanosiphovirus Harboring Integrase.

Zhong KX, Suttle CA, Baudoux AC, Derelle E, Colombet J, Cho A, Caleta J, Six C, Jacquet S.

Front Microbiol. 2018 Sep 19;9:2204. doi: 10.3389/fmicb.2018.02204. eCollection 2018.

14.

A Virus Infecting Marine Photoheterotrophic Alphaproteobacteria (Citromicrobium spp.) Defines a New Lineage of ssDNA Viruses.

Zheng Q, Chen Q, Xu Y, Suttle CA, Jiao N.

Front Microbiol. 2018 Jun 27;9:1418. doi: 10.3389/fmicb.2018.01418. eCollection 2018.

15.

Transcriptional responses of the marine green alga Micromonas pusilla and an infecting prasinovirus under different phosphate conditions.

Bachy C, Charlesworth CJ, Chan AM, Finke JF, Wong CH, Wei CL, Sudek S, Coleman ML, Suttle CA, Worden AZ.

Environ Microbiol. 2018 Aug;20(8):2898-2912. doi: 10.1111/1462-2920.14273. Epub 2018 Sep 9.

PMID:
29749714
16.

The kinetoplastid-infecting Bodo saltans virus (BsV), a window into the most abundant giant viruses in the sea.

Deeg CM, Chow CT, Suttle CA.

Elife. 2018 Mar 27;7. pii: e33014. doi: 10.7554/eLife.33014.

17.

Deposition rates of viruses and bacteria above the atmospheric boundary layer.

Reche I, D'Orta G, Mladenov N, Winget DM, Suttle CA.

ISME J. 2018 Apr;12(4):1154-1162. doi: 10.1038/s41396-017-0042-4. Epub 2018 Jan 29.

18.

The Genome of the Beluga Whale (Delphinapterus leucas).

Jones SJM, Taylor GA, Chan S, Warren RL, Hammond SA, Bilobram S, Mordecai G, Suttle CA, Miller KM, Schulze A, Chan AM, Jones SJ, Tse K, Li I, Cheung D, Mungall KL, Choo C, Ally A, Dhalla N, Tam AKY, Troussard A, Kirk H, Pandoh P, Paulino D, Coope RJN, Mungall AJ, Moore R, Zhao Y, Birol I, Ma Y, Marra M, Haulena M.

Genes (Basel). 2017 Dec 11;8(12). pii: E378. doi: 10.3390/genes8120378.

19.

Dynamics of Heterotrophic Bacterial Assemblages within Synechococcus Cultures.

Zheng Q, Wang Y, Xie R, Lang AS, Liu Y, Lu J, Zhang X, Sun J, Suttle CA, Jiao N.

Appl Environ Microbiol. 2018 Jan 17;84(3). pii: e01517-17. doi: 10.1128/AEM.01517-17. Print 2018 Feb 1.

20.

A compendium of geochemical information from the Saanich Inlet water column.

Torres-Beltrán M, Hawley AK, Capelle D, Zaikova E, Walsh DA, Mueller A, Scofield M, Payne C, Pakhomova L, Kheirandish S, Finke J, Bhatia M, Shevchuk O, Gies EA, Fairley D, Michiels C, Suttle CA, Whitney F, Crowe SA, Tortell PD, Hallam SJ.

Sci Data. 2017 Oct 31;4:170159. doi: 10.1038/sdata.2017.159. Erratum in: Sci Data. 2019 Jan 15;6(1):1.

21.

A compendium of multi-omic sequence information from the Saanich Inlet water column.

Hawley AK, Torres-Beltrán M, Zaikova E, Walsh DA, Mueller A, Scofield M, Kheirandish S, Payne C, Pakhomova L, Bhatia M, Shevchuk O, Gies EA, Fairley D, Malfatti SA, Norbeck AD, Brewer HM, Pasa-Tolic L, Del Rio TG, Suttle CA, Tringe S, Hallam SJ.

Sci Data. 2017 Oct 31;4:170160. doi: 10.1038/sdata.2017.160.

22.

Author Correction: Re-examination of the relationship between marine virus and microbial cell abundances.

Wigington CH, Sonderegger D, Brussaard CPD, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Suttle CA, Stock C, Wilson WH, Wommack KE, Wilhelm SW, Weitz JS.

Nat Microbiol. 2017 Nov;2(11):1571. doi: 10.1038/s41564-017-0042-1.

PMID:
28974689
23.

Flamingos and drought as drivers of nutrients and microbial dynamics in a saline lake.

Batanero GL, León-Palmero E, Li L, Green AJ, Rendón-Martos M, Suttle CA, Reche I.

Sci Rep. 2017 Sep 22;7(1):12173. doi: 10.1038/s41598-017-12462-9.

24.

Cryo-EM reconstruction of the Cafeteria roenbergensis virus capsid suggests novel assembly pathway for giant viruses.

Xiao C, Fischer MG, Bolotaulo DM, Ulloa-Rondeau N, Avila GA, Suttle CA.

Sci Rep. 2017 Jul 14;7(1):5484. doi: 10.1038/s41598-017-05824-w.

25.

Nutrients and Other Environmental Factors Influence Virus Abundances across Oxic and Hypoxic Marine Environments.

Finke JF, Hunt BPV, Winter C, Carmack EC, Suttle CA.

Viruses. 2017 Jun 17;9(6). pii: E152. doi: 10.3390/v9060152.

26.
27.

Consensus statement: Virus taxonomy in the age of metagenomics.

Simmonds P, Adams MJ, Benkő M, Breitbart M, Brister JR, Carstens EB, Davison AJ, Delwart E, Gorbalenya AE, Harrach B, Hull R, King AM, Koonin EV, Krupovic M, Kuhn JH, Lefkowitz EJ, Nibert ML, Orton R, Roossinck MJ, Sabanadzovic S, Sullivan MB, Suttle CA, Tesh RB, van der Vlugt RA, Varsani A, Zerbini FM.

Nat Rev Microbiol. 2017 Mar;15(3):161-168. doi: 10.1038/nrmicro.2016.177. Epub 2017 Jan 3.

PMID:
28134265
28.

Environmental microbiology: Viral diversity on the global stage.

Suttle CA.

Nat Microbiol. 2016 Oct 26;1(11):16205. doi: 10.1038/nmicrobiol.2016.205. No abstract available.

PMID:
27782140
29.

Re-examination of the relationship between marine virus and microbial cell abundances.

Wigington CH, Sonderegger D, Brussaard CP, Buchan A, Finke JF, Fuhrman JA, Lennon JT, Middelboe M, Suttle CA, Stock C, Wilson WH, Wommack KE, Wilhelm SW, Weitz JS.

Nat Microbiol. 2016 Jan 25;1:15024. doi: 10.1038/nmicrobiol.2015.24. Erratum in: Nat Microbiol. 2017 Nov;2(11):1571.

PMID:
27572161
30.

A comprehensive method for amplicon-based and metagenomic characterization of viruses, bacteria, and eukaryotes in freshwater samples.

Uyaguari-Diaz MI, Chan M, Chaban BL, Croxen MA, Finke JF, Hill JE, Peabody MA, Van Rossum T, Suttle CA, Brinkman FS, Isaac-Renton J, Prystajecky NA, Tang P.

Microbiome. 2016 Jul 19;4(1):20. doi: 10.1186/s40168-016-0166-1.

31.
32.

Biogeography of Viruses in the Sea.

Chow CE, Suttle CA.

Annu Rev Virol. 2015 Nov;2(1):41-66. doi: 10.1146/annurev-virology-031413-085540. Epub 2015 Aug 26. Review.

PMID:
26958906
33.

Metagenomic Analysis Suggests Modern Freshwater Microbialites Harbor a Distinct Core Microbial Community.

White RA 3rd, Chan AM, Gavelis GS, Leander BS, Brady AL, Slater GF, Lim DS, Suttle CA.

Front Microbiol. 2016 Jan 28;6:1531. doi: 10.3389/fmicb.2015.01531. eCollection 2015.

34.

Year-Long Metagenomic Study of River Microbiomes Across Land Use and Water Quality.

Van Rossum T, Peabody MA, Uyaguari-Diaz MI, Cronin KI, Chan M, Slobodan JR, Nesbitt MJ, Suttle CA, Hsiao WW, Tang PK, Prystajecky NA, Brinkman FS.

Front Microbiol. 2015 Dec 16;6:1405. doi: 10.3389/fmicb.2015.01405. eCollection 2015.

35.

Metagenomic analysis reveals that modern microbialites and polar microbial mats have similar taxonomic and functional potential.

White RA 3rd, Power IM, Dipple GM, Southam G, Suttle CA.

Front Microbiol. 2015 Sep 23;6:966. doi: 10.3389/fmicb.2015.00966. eCollection 2015.

36.

Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates.

Gavelis GS, White RA, Suttle CA, Keeling PJ, Leander BS.

BMC Genomics. 2015 Jul 17;16:528. doi: 10.1186/s12864-015-1636-8.

37.

Eye-like ocelloids are built from different endosymbiotically acquired components.

Gavelis GS, Hayakawa S, White RA 3rd, Gojobori T, Suttle CA, Keeling PJ, Leander BS.

Nature. 2015 Jul 9;523(7559):204-7. doi: 10.1038/nature14593. Epub 2015 Jul 1.

PMID:
26131935
38.

Previously unknown evolutionary groups dominate the ssDNA gokushoviruses in oxic and anoxic waters of a coastal marine environment.

Labonté JM, Hallam SJ, Suttle CA.

Front Microbiol. 2015 Apr 22;6:315. doi: 10.3389/fmicb.2015.00315. eCollection 2015.

39.

Combining genomic sequencing methods to explore viral diversity and reveal potential virus-host interactions.

Chow CE, Winget DM, White RA 3rd, Hallam SJ, Suttle CA.

Front Microbiol. 2015 Apr 10;6:265. doi: 10.3389/fmicb.2015.00265. eCollection 2015.

40.

Polar freshwater cyanophage S-EIV1 represents a new widespread evolutionary lineage of phages.

Chénard C, Chan AM, Vincent WF, Suttle CA.

ISME J. 2015 Sep;9(9):2046-58. doi: 10.1038/ismej.2015.24. Epub 2015 Mar 27.

41.

Corrigendum: Metagenomic and whole-genome analysis reveals new lineages of gokushoviruses and biogeographic separation in the sea.

Labonté JM, Suttle CA.

Front Microbiol. 2015 Feb 11;6:114. doi: 10.3389/fmicb.2015.00114. eCollection 2015.

42.

Metagenomic characterization of viral communities in corals: mining biological signal from methodological noise.

Wood-Charlson EM, Weynberg KD, Suttle CA, Roux S, van Oppen MJ.

Environ Microbiol. 2015 Oct;17(10):3440-9. doi: 10.1111/1462-2920.12803. Epub 2015 Mar 27. Review.

PMID:
25708646
43.

A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes.

Weitz JS, Stock CA, Wilhelm SW, Bourouiba L, Coleman ML, Buchan A, Follows MJ, Fuhrman JA, Jover LF, Lennon JT, Middelboe M, Sonderegger DL, Suttle CA, Taylor BP, Frede Thingstad T, Wilson WH, Eric Wommack K.

ISME J. 2015 Jun;9(6):1352-64. doi: 10.1038/ismej.2014.220. Epub 2015 Jan 30.

44.

High temporal and spatial diversity in marine RNA viruses implies that they have an important role in mortality and structuring plankton communities.

Gustavsen JA, Winget DM, Tian X, Suttle CA.

Front Microbiol. 2014 Dec 15;5:703. doi: 10.3389/fmicb.2014.00703. eCollection 2014.

45.

The virion of Cafeteria roenbergensis virus (CroV) contains a complex suite of proteins for transcription and DNA repair.

Fischer MG, Kelly I, Foster LJ, Suttle CA.

Virology. 2014 Oct;466-467:82-94. doi: 10.1016/j.virol.2014.05.029. Epub 2014 Jun 25.

46.

Generating viral metagenomes from the coral holobiont.

Weynberg KD, Wood-Charlson EM, Suttle CA, van Oppen MJ.

Front Microbiol. 2014 May 7;5:206. doi: 10.3389/fmicb.2014.00206. eCollection 2014.

47.

Metagenomic and whole-genome analysis reveals new lineages of gokushoviruses and biogeographic separation in the sea.

Labonté JM, Suttle CA.

Front Microbiol. 2013 Dec 24;4:404. doi: 10.3389/fmicb.2013.00404. eCollection 2013. Erratum in: Front Microbiol. 2015;6:114.

48.

Viruses: unlocking the greatest biodiversity on Earth.

Suttle CA.

Genome. 2013 Oct;56(10):542-4. doi: 10.1139/gen-2013-0152. No abstract available.

49.

Prevalence of psbA-containing cyanobacterial podoviruses in the ocean.

Zheng Q, Jiao N, Zhang R, Chen F, Suttle CA.

Sci Rep. 2013 Nov 13;3:3207. doi: 10.1038/srep03207.

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