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Items: 28

1.

Imputation of canine genotype array data using 365 whole-genome sequences improves power of genome-wide association studies.

Hayward JJ, White ME, Boyle M, Shannon LM, Casal ML, Castelhano MG, Center SA, Meyers-Wallen VN, Simpson KW, Sutter NB, Todhunter RJ, Boyko AR.

PLoS Genet. 2019 Sep 16;15(9):e1008003. doi: 10.1371/journal.pgen.1008003. eCollection 2019 Sep.

2.

Genome Sequence of JangDynasty, a Newly Isolated Mycobacteriophage.

Jang C, Kalaj N, Hwang B, Hughes L, Yang C, Pak T, Kim J, Han DY, Tedjakusnadi J, Fernandez N, Dean N, Muthiah A, Sutter NB, Diaz A.

Genome Announc. 2018 May 24;6(21). pii: e00320-18. doi: 10.1128/genomeA.00320-18.

3.

Mutation responsible for congenital photosensitivity and hyperbilirubinemia in Southdown sheep.

Posbergh CJ, Kalla SE, Sutter NB, Tennant BC, Huson HJ.

Am J Vet Res. 2018 May;79(5):538-545. doi: 10.2460/ajvr.79.5.538.

PMID:
29688779
4.

Reply to Wang et al.: Sequencing datasets do not refute Central Asian domestication origin of dogs.

Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, McLean C, White ME, Abi Said MR, Anita BA, Bondjengo NI, Calero J, Galov A, Hedimbi M, Imam B, Khalap R, Lally D, Masta A, Oliveira KC, Pérez L, Randall J, Tam NM, Trujillo-Cornejo FJ, Valeriano C, Sutter NB, Todhunter RJ, Bustamante CD, Boyko AR.

Proc Natl Acad Sci U S A. 2016 May 10;113(19):E2556-7. doi: 10.1073/pnas.1600618113. Epub 2016 Apr 20. No abstract available.

5.

Skeletal variation in Tennessee Walking Horses maps to the LCORL/NCAPG gene region.

Staiger EA, Al Abri MA, Pflug KM, Kalla SE, Ainsworth DM, Miller D, Raudsepp T, Sutter NB, Brooks SA.

Physiol Genomics. 2016 May;48(5):325-35. doi: 10.1152/physiolgenomics.00100.2015. Epub 2016 Mar 1.

PMID:
26931356
6.

Complex disease and phenotype mapping in the domestic dog.

Hayward JJ, Castelhano MG, Oliveira KC, Corey E, Balkman C, Baxter TL, Casal ML, Center SA, Fang M, Garrison SJ, Kalla SE, Korniliev P, Kotlikoff MI, Moise NS, Shannon LM, Simpson KW, Sutter NB, Todhunter RJ, Boyko AR.

Nat Commun. 2016 Jan 22;7:10460. doi: 10.1038/ncomms10460.

7.

Genetic structure in village dogs reveals a Central Asian domestication origin.

Shannon LM, Boyko RH, Castelhano M, Corey E, Hayward JJ, McLean C, White ME, Abi Said M, Anita BA, Bondjengo NI, Calero J, Galov A, Hedimbi M, Imam B, Khalap R, Lally D, Masta A, Oliveira KC, Pérez L, Randall J, Tam NM, Trujillo-Cornejo FJ, Valeriano C, Sutter NB, Todhunter RJ, Bustamante CD, Boyko AR.

Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13639-44. doi: 10.1073/pnas.1516215112. Epub 2015 Oct 19.

8.

Precision and accuracy of ground reaction force normalization in a heterogeneous population of dogs.

Krotscheck U, Todhunter RJ, Nelson SA, Sutter NB, Mohammed HO.

Vet Surg. 2014 May;43(4):437-45. doi: 10.1111/j.1532-950X.2014.12176.x. Epub 2014 Apr 5.

PMID:
24702543
9.

Derived variants at six genes explain nearly half of size reduction in dog breeds.

Rimbault M, Beale HC, Schoenebeck JJ, Hoopes BC, Allen JJ, Kilroy-Glynn P, Wayne RK, Sutter NB, Ostrander EA.

Genome Res. 2013 Dec;23(12):1985-95. doi: 10.1101/gr.157339.113. Epub 2013 Sep 11.

10.

The insulin-like growth factor 1 receptor (IGF1R) contributes to reduced size in dogs.

Hoopes BC, Rimbault M, Liebers D, Ostrander EA, Sutter NB.

Mamm Genome. 2012 Dec;23(11-12):780-90. doi: 10.1007/s00335-012-9417-z. Epub 2012 Aug 18.

11.

Four loci explain 83% of size variation in the horse.

Makvandi-Nejad S, Hoffman GE, Allen JJ, Chu E, Gu E, Chandler AM, Loredo AI, Bellone RR, Mezey JG, Brooks SA, Sutter NB.

PLoS One. 2012;7(7):e39929. doi: 10.1371/journal.pone.0039929. Epub 2012 Jul 11.

12.

Disease severity in a mouse model of ataxia telangiectasia is modulated by the DNA damage checkpoint gene Hus1.

Balmus G, Zhu M, Mukherjee S, Lyndaker AM, Hume KR, Lee J, Riccio ML, Reeves AP, Sutter NB, Noden DM, Peters RM, Weiss RS.

Hum Mol Genet. 2012 Aug 1;21(15):3408-20. doi: 10.1093/hmg/dds173. Epub 2012 May 9.

13.

DOG-SPOT database for comprehensive management of dog genetic research data.

Powell JA, Allen J, Sutter NB.

Source Code Biol Med. 2010 Dec 15;5:10. doi: 10.1186/1751-0473-5-10.

14.

Morphological variation in the horse: defining complex traits of body size and shape.

Brooks SA, Makvandi-Nejad S, Chu E, Allen JJ, Streeter C, Gu E, McCleery B, Murphy BA, Bellone R, Sutter NB.

Anim Genet. 2010 Dec;41 Suppl 2:159-65. doi: 10.1111/j.1365-2052.2010.02127.x.

PMID:
21070291
15.

A simple genetic architecture underlies morphological variation in dogs.

Boyko AR, Quignon P, Li L, Schoenebeck JJ, Degenhardt JD, Lohmueller KE, Zhao K, Brisbin A, Parker HG, vonHoldt BM, Cargill M, Auton A, Reynolds A, Elkahloun AG, Castelhano M, Mosher DS, Sutter NB, Johnson GS, Novembre J, Hubisz MJ, Siepel A, Wayne RK, Bustamante CD, Ostrander EA.

PLoS Biol. 2010 Aug 10;8(8):e1000451. doi: 10.1371/journal.pbio.1000451.

16.

The IGF1 small dog haplotype is derived from Middle Eastern grey wolves.

Gray MM, Sutter NB, Ostrander EA, Wayne RK.

BMC Biol. 2010 Feb 24;8:16. doi: 10.1186/1741-7007-8-16. Erratum in: BMC Biol. 2010;8:118.

17.

An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs.

Parker HG, VonHoldt BM, Quignon P, Margulies EH, Shao S, Mosher DS, Spady TC, Elkahloun A, Cargill M, Jones PG, Maslen CL, Acland GM, Sutter NB, Kuroki K, Bustamante CD, Wayne RK, Ostrander EA.

Science. 2009 Aug 21;325(5943):995-8. doi: 10.1126/science.1173275. Epub 2009 Jul 16.

18.

Linkage disequilibrium and demographic history of wild and domestic canids.

Gray MM, Granka JM, Bustamante CD, Sutter NB, Boyko AR, Zhu L, Ostrander EA, Wayne RK.

Genetics. 2009 Apr;181(4):1493-505. doi: 10.1534/genetics.108.098830. Epub 2009 Feb 2.

19.

Morphometrics within dog breeds are highly reproducible and dispute Rensch's rule.

Sutter NB, Mosher DS, Gray MM, Ostrander EA.

Mamm Genome. 2008 Oct-Dec;19(10-12):713-23. doi: 10.1007/s00335-008-9153-6. Epub 2008 Nov 20.

20.

A mutation in the myostatin gene increases muscle mass and enhances racing performance in heterozygote dogs.

Mosher DS, Quignon P, Bustamante CD, Sutter NB, Mellersh CS, Parker HG, Ostrander EA.

PLoS Genet. 2007 May 25;3(5):e79. Epub 2007 Apr 30.

21.

A single IGF1 allele is a major determinant of small size in dogs.

Sutter NB, Bustamante CD, Chase K, Gray MM, Zhao K, Zhu L, Padhukasahasram B, Karlins E, Davis S, Jones PG, Quignon P, Johnson GS, Parker HG, Fretwell N, Mosher DS, Lawler DF, Satyaraj E, Nordborg M, Lark KG, Wayne RK, Ostrander EA.

Science. 2007 Apr 6;316(5821):112-5. Erratum in: Science. 2007 Jun 1;316(5829):1284.

22.

Genetic architecture of the dog: sexual size dimorphism and functional morphology.

Lark KG, Chase K, Sutter NB.

Trends Genet. 2006 Oct;22(10):537-44. Epub 2006 Aug 24. Review. Erratum in: Trends Genet. 2007 Jan;23(1):25.

23.

Genome sequence, comparative analysis and haplotype structure of the domestic dog.

Lindblad-Toh K, Wade CM, Mikkelsen TS, Karlsson EK, Jaffe DB, Kamal M, Clamp M, Chang JL, Kulbokas EJ 3rd, Zody MC, Mauceli E, Xie X, Breen M, Wayne RK, Ostrander EA, Ponting CP, Galibert F, Smith DR, DeJong PJ, Kirkness E, Alvarez P, Biagi T, Brockman W, Butler J, Chin CW, Cook A, Cuff J, Daly MJ, DeCaprio D, Gnerre S, Grabherr M, Kellis M, Kleber M, Bardeleben C, Goodstadt L, Heger A, Hitte C, Kim L, Koepfli KP, Parker HG, Pollinger JP, Searle SM, Sutter NB, Thomas R, Webber C, Baldwin J, Abebe A, Abouelleil A, Aftuck L, Ait-Zahra M, Aldredge T, Allen N, An P, Anderson S, Antoine C, Arachchi H, Aslam A, Ayotte L, Bachantsang P, Barry A, Bayul T, Benamara M, Berlin A, Bessette D, Blitshteyn B, Bloom T, Blye J, Boguslavskiy L, Bonnet C, Boukhgalter B, Brown A, Cahill P, Calixte N, Camarata J, Cheshatsang Y, Chu J, Citroen M, Collymore A, Cooke P, Dawoe T, Daza R, Decktor K, DeGray S, Dhargay N, Dooley K, Dooley K, Dorje P, Dorjee K, Dorris L, Duffey N, Dupes A, Egbiremolen O, Elong R, Falk J, Farina A, Faro S, Ferguson D, Ferreira P, Fisher S, FitzGerald M, Foley K, Foley C, Franke A, Friedrich D, Gage D, Garber M, Gearin G, Giannoukos G, Goode T, Goyette A, Graham J, Grandbois E, Gyaltsen K, Hafez N, Hagopian D, Hagos B, Hall J, Healy C, Hegarty R, Honan T, Horn A, Houde N, Hughes L, Hunnicutt L, Husby M, Jester B, Jones C, Kamat A, Kanga B, Kells C, Khazanovich D, Kieu AC, Kisner P, Kumar M, Lance K, Landers T, Lara M, Lee W, Leger JP, Lennon N, Leuper L, LeVine S, Liu J, Liu X, Lokyitsang Y, Lokyitsang T, Lui A, Macdonald J, Major J, Marabella R, Maru K, Matthews C, McDonough S, Mehta T, Meldrim J, Melnikov A, Meneus L, Mihalev A, Mihova T, Miller K, Mittelman R, Mlenga V, Mulrain L, Munson G, Navidi A, Naylor J, Nguyen T, Nguyen N, Nguyen C, Nguyen T, Nicol R, Norbu N, Norbu C, Novod N, Nyima T, Olandt P, O'Neill B, O'Neill K, Osman S, Oyono L, Patti C, Perrin D, Phunkhang P, Pierre F, Priest M, Rachupka A, Raghuraman S, Rameau R, Ray V, Raymond C, Rege F, Rise C, Rogers J, Rogov P, Sahalie J, Settipalli S, Sharpe T, Shea T, Sheehan M, Sherpa N, Shi J, Shih D, Sloan J, Smith C, Sparrow T, Stalker J, Stange-Thomann N, Stavropoulos S, Stone C, Stone S, Sykes S, Tchuinga P, Tenzing P, Tesfaye S, Thoulutsang D, Thoulutsang Y, Topham K, Topping I, Tsamla T, Vassiliev H, Venkataraman V, Vo A, Wangchuk T, Wangdi T, Weiand M, Wilkinson J, Wilson A, Yadav S, Yang S, Yang X, Young G, Yu Q, Zainoun J, Zembek L, Zimmer A, Lander ES.

Nature. 2005 Dec 8;438(7069):803-19.

PMID:
16341006
24.

Expanded repeat in canine epilepsy.

Lohi H, Young EJ, Fitzmaurice SN, Rusbridge C, Chan EM, Vervoort M, Turnbull J, Zhao XC, Ianzano L, Paterson AD, Sutter NB, Ostrander EA, André C, Shelton GD, Ackerley CA, Scherer SW, Minassian BA.

Science. 2005 Jan 7;307(5706):81.

25.

Dog star rising: the canine genetic system.

Sutter NB, Ostrander EA.

Nat Rev Genet. 2004 Dec;5(12):900-10. Review.

PMID:
15573122
26.

Extensive and breed-specific linkage disequilibrium in Canis familiaris.

Sutter NB, Eberle MA, Parker HG, Pullar BJ, Kirkness EF, Kruglyak L, Ostrander EA.

Genome Res. 2004 Dec;14(12):2388-96. Epub 2004 Nov 15.

27.

Genetic structure of the purebred domestic dog.

Parker HG, Kim LV, Sutter NB, Carlson S, Lorentzen TD, Malek TB, Johnson GS, DeFrance HB, Ostrander EA, Kruglyak L.

Science. 2004 May 21;304(5674):1160-4.

28.

Chromatin insulation by a transcriptional activator.

Sutter NB, Scalzo D, Fiering S, Groudine M, Martin DI.

Proc Natl Acad Sci U S A. 2003 Feb 4;100(3):1105-10. Epub 2003 Jan 23.

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