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Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle.

Friman ET, Deluz C, Meireles-Filho AC, Govindan S, Gardeux V, Deplancke B, Suter DM.

Elife. 2019 Dec 3;8. pii: e50087. doi: 10.7554/eLife.50087.


Hyperpolarized relaxometry based nuclear T1 noise spectroscopy in diamond.

Ajoy A, Safvati B, Nazaryan R, Oon JT, Han B, Raghavan P, Nirodi R, Aguilar A, Liu K, Cai X, Lv X, Druga E, Ramanathan C, Reimer JA, Meriles CA, Suter D, Pines A.

Nat Commun. 2019 Nov 14;10(1):5160. doi: 10.1038/s41467-019-13042-3.


Magnetization Dynamics of an Individual Single-Crystalline Fe-Filled Carbon Nanotube.

Lenz K, Narkowicz R, Wagner K, Reiche CF, Körner J, Schneider T, Kákay A, Schultheiss H, Weissker U, Wolf D, Suter D, Büchner B, Fassbender J, Mühl T, Lindner J.

Small. 2019 Dec;15(49):e1904315. doi: 10.1002/smll.201904315. Epub 2019 Nov 11.


Extending electron paramagnetic resonance to nanoliter volume protein single crystals using a self-resonant microhelix.

Sidabras JW, Duan J, Winkler M, Happe T, Hussein R, Zouni A, Suter D, Schnegg A, Lubitz W, Reijerse EJ.

Sci Adv. 2019 Oct 4;5(10):eaay1394. doi: 10.1126/sciadv.aay1394. eCollection 2019 Oct.


Endogenous fluctuations of OCT4 and SOX2 bias pluripotent cell fate decisions.

Strebinger D, Deluz C, Friman ET, Govindan S, Alber AB, Suter DM.

Mol Syst Biol. 2019 Sep;15(9):e9002. doi: 10.15252/msb.20199002.


Deterministic Approximate Methods for Maximum Consensus Robust Fitting.

Le HM, Chin TJ, Eriksson A, Do TT, Suter D.

IEEE Trans Pattern Anal Mach Intell. 2019 Sep 3. doi: 10.1109/TPAMI.2019.2939307. [Epub ahead of print]


A single tyrosine phosphorylation site in cortactin is important for filopodia formation in neuronal growth cones.

Ren Y, He Y, Brown S, Zbornik E, Mlodzianoski MJ, Ma D, Huang F, Mattoo S, Suter DM.

Mol Biol Cell. 2019 Jul 15;30(15):1817-1833. doi: 10.1091/mbc.E18-04-0202. Epub 2019 May 22.


Anisotropy vs isotropy in living cell indentation with AFM.

Efremov YM, Velay-Lizancos M, Weaver CJ, Athamneh AI, Zavattieri PD, Suter DM, Raman A.

Sci Rep. 2019 Apr 8;9(1):5757. doi: 10.1038/s41598-019-42077-1.


Quantitative relationships between SMAD dynamics and target gene activation kinetics in single live cells.

Tidin O, Friman ET, Naef F, Suter DM.

Sci Rep. 2019 Mar 29;9(1):5372. doi: 10.1038/s41598-019-41870-2.


Dynamics of protein synthesis and degradation through the cell cycle.

Alber AB, Suter DM.

Cell Cycle. 2019 Apr;18(8):784-794. doi: 10.1080/15384101.2019.1598725. Epub 2019 Mar 30.


Memory and relatedness of transcriptional activity in mammalian cell lineages.

Phillips NE, Mandic A, Omidi S, Naef F, Suter DM.

Nat Commun. 2019 Mar 14;10(1):1208. doi: 10.1038/s41467-019-09189-8.


Mitotic chromosome binding predicts transcription factor properties in interphase.

Raccaud M, Friman ET, Alber AB, Agarwal H, Deluz C, Kuhn T, Gebhardt JCM, Suter DM.

Nat Commun. 2019 Jan 30;10(1):487. doi: 10.1038/s41467-019-08417-5.


Dynamics of frequency-swept nuclear spin optical pumping in powdered diamond at low magnetic fields.

Zangara PR, Dhomkar S, Ajoy A, Liu K, Nazaryan R, Pagliero D, Suter D, Reimer JA, Pines A, Meriles CA.

Proc Natl Acad Sci U S A. 2019 Feb 12;116(7):2512-2520. doi: 10.1073/pnas.1811994116. Epub 2019 Jan 24.


Single-molecule dynamics and genome-wide transcriptomics reveal that NF-kB (p65)-DNA binding times can be decoupled from transcriptional activation.

Callegari A, Sieben C, Benke A, Suter DM, Fierz B, Mazza D, Manley S.

PLoS Genet. 2019 Jan 17;15(1):e1007891. doi: 10.1371/journal.pgen.1007891. eCollection 2019 Jan.


An Integrated Cytoskeletal Model of Neurite Outgrowth.

Miller KE, Suter DM.

Front Cell Neurosci. 2018 Nov 26;12:447. doi: 10.3389/fncel.2018.00447. eCollection 2018. Review.


Enhanced dynamic nuclear polarization via swept microwave frequency combs.

Ajoy A, Nazaryan R, Liu K, Lv X, Safvati B, Wang G, Druga E, Reimer JA, Suter D, Ramanathan C, Meriles CA, Pines A.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):10576-10581. doi: 10.1073/pnas.1807125115. Epub 2018 Oct 2.


Three-Dimensional Retinal Organoids Facilitate the Investigation of Retinal Ganglion Cell Development, Organization and Neurite Outgrowth from Human Pluripotent Stem Cells.

Fligor CM, Langer KB, Sridhar A, Ren Y, Shields PK, Edler MC, Ohlemacher SK, Sluch VM, Zack DJ, Zhang C, Suter DM, Meyer JS.

Sci Rep. 2018 Sep 28;8(1):14520. doi: 10.1038/s41598-018-32871-8.


Mapping heterogeneity of cellular mechanics by multi-harmonic atomic force microscopy.

Efremov YM, Cartagena-Rivera AX, Athamneh AIM, Suter DM, Raman A.

Nat Protoc. 2018 Oct;13(10):2200-2216. doi: 10.1038/s41596-018-0031-8.


Single Live Cell Monitoring of Protein Turnover Reveals Intercellular Variability and Cell-Cycle Dependence of Degradation Rates.

Alber AB, Paquet ER, Biserni M, Naef F, Suter DM.

Mol Cell. 2018 Sep 20;71(6):1079-1091.e9. doi: 10.1016/j.molcel.2018.07.023. Epub 2018 Aug 23.


Searching for Representative Modes on Hypergraphs for Robust Geometric Model Fitting.

Wang H, Xiao G, Yan Y, Suter D.

IEEE Trans Pattern Anal Mach Intell. 2019 Mar;41(3):697-711. doi: 10.1109/TPAMI.2018.2803173. Epub 2018 Feb 7.


Highly Stable and Strongly Emitting N-Heterocyclic Carbene Platinum(II) Biaryl Complexes.

Suter D, van Summeren LTCG, Blacque O, Venkatesan K.

Inorg Chem. 2018 Jul 16;57(14):8160-8168. doi: 10.1021/acs.inorgchem.8b00564. Epub 2018 Jun 22.


Modulation of transcriptional burst frequency by histone acetylation.

Nicolas D, Zoller B, Suter DM, Naef F.

Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7153-7158. doi: 10.1073/pnas.1722330115. Epub 2018 Jun 18.


Orientation-independent room temperature optical 13C hyperpolarization in powdered diamond.

Ajoy A, Liu K, Nazaryan R, Lv X, Zangara PR, Safvati B, Wang G, Arnold D, Li G, Lin A, Raghavan P, Druga E, Dhomkar S, Pagliero D, Reimer JA, Suter D, Meriles CA, Pines A.

Sci Adv. 2018 May 18;4(5):eaar5492. doi: 10.1126/sciadv.aar5492. eCollection 2018 May.


nox2/cybb Deficiency Affects Zebrafish Retinotectal Connectivity.

Weaver CJ, Terzi A, Roeder H, Gurol T, Deng Q, Leung YF, Suter DM.

J Neurosci. 2018 Jun 27;38(26):5854-5871. doi: 10.1523/JNEUROSCI.1483-16.2018. Epub 2018 May 23.


Computed tomography imaging for the characterisation of drugs with radiation density measurements and HU spectroscopy.

Sieron DA, Steib M, Suter D, Obmann VC, Huber AT, Ebner L, Inderbitzin D, Christe A.

Swiss Med Wkly. 2018 Jan 26;148:w14585. doi: 10.4414/smw.2018.14585. eCollection 2018.


A low-cost microwell device for high-resolution imaging of neurite outgrowth in 3D.

Ren Y, Mlodzianoski MJ, Lee AC, Huang F, Suter DM.

J Neural Eng. 2018 Jun;15(3):035001. doi: 10.1088/1741-2552/aaaa32. Epub 2018 Jan 24.


Engineered Multivalent Sensors to Detect Coexisting Histone Modifications in Living Stem Cells.

Delachat AM, Guidotti N, Bachmann AL, Meireles-Filho ACA, Pick H, Lechner CC, Deluz C, Deplancke B, Suter DM, Fierz B.

Cell Chem Biol. 2018 Jan 18;25(1):51-56.e6. doi: 10.1016/j.chembiol.2017.10.008. Epub 2017 Nov 22.


Transcription factor retention on mitotic chromosomes: regulatory mechanisms and impact on cell fate decisions.

Raccaud M, Suter DM.

FEBS Lett. 2018 Mar;592(6):878-887. doi: 10.1002/1873-3468.12828. Epub 2017 Sep 12. Review.


Neurite elongation is highly correlated with bulk forward translocation of microtubules.

Athamneh AIM, He Y, Lamoureux P, Fix L, Suter DM, Miller KE.

Sci Rep. 2017 Aug 4;7(1):7292. doi: 10.1038/s41598-017-07402-6.


sCMOS noise-correction algorithm for microscopy images.

Liu S, Mlodzianoski MJ, Hu Z, Ren Y, McElmurry K, Suter DM, Huang F.

Nat Methods. 2017 Jul 28;14(8):760-761. doi: 10.1038/nmeth.4379. No abstract available.


Validation of DWI pre-processing procedures for reliable differentiation between human brain gliomas.

Vellmer S, Tonoyan AS, Suter D, Pronin IN, Maximov II.

Z Med Phys. 2018 Feb;28(1):14-24. doi: 10.1016/j.zemedi.2017.04.005. Epub 2017 May 19.


A novel method for quantitative measurements of gene expression in single living cells.

Mandic A, Strebinger D, Regali C, Phillips NE, Suter DM.

Methods. 2017 May 1;120:65-75. doi: 10.1016/j.ymeth.2017.04.008. Epub 2017 Apr 27.


Anisotropic diffusion phantoms based on microcapillaries.

Vellmer S, Edelhoff D, Suter D, Maximov II.

J Magn Reson. 2017 Jun;279:1-10. doi: 10.1016/j.jmr.2017.04.002. Epub 2017 Apr 5.


Single-spin magnetic resonance in the nitrogen-vacancy center of diamond.

Suter D, Jelezko F.

Prog Nucl Magn Reson Spectrosc. 2017 Feb;98-99:50-62. doi: 10.1016/j.pnmrs.2016.12.001. Epub 2016 Dec 26. Review.


Epidemiological tracing of bovine tuberculosis in Switzerland, multilocus variable number of tandem repeat analysis of Mycobacterium bovis and Mycobacterium caprae.

Ghielmetti G, Scherrer S, Friedel U, Frei D, Suter D, Perler L, Wittenbrink MM.

PLoS One. 2017 Feb 21;12(2):e0172474. doi: 10.1371/journal.pone.0172474. eCollection 2017.


The elusive role of mitotic bookmarking in transcriptional regulation: Insights from Sox2.

Deluz C, Strebinger D, Friman ET, Suter DM.

Cell Cycle. 2017 Apr 3;16(7):601-606. doi: 10.1080/15384101.2017.1288332. Epub 2017 Feb 6.


Clustering with Hypergraphs: The Case for Large Hyperedges.

Purkait P, Chin TJ, Sadri A, Suter D.

IEEE Trans Pattern Anal Mach Intell. 2017 Sep;39(9):1697-1711. doi: 10.1109/TPAMI.2016.2614980. Epub 2016 Oct 4.


Comparative analysis of isotropic diffusion weighted imaging sequences.

Vellmer S, Stirnberg R, Edelhoff D, Suter D, Stöcker T, Maximov II.

J Magn Reson. 2017 Feb;275:137-147. doi: 10.1016/j.jmr.2016.12.011. Epub 2016 Dec 30.


Drought Effects on Proanthocyanidins in Sainfoin (Onobrychis viciifolia Scop.) Are Dependent on the Plant's Ontogenetic Stage.

Malisch CS, Salminen JP, Kölliker R, Engström MT, Suter D, Studer B, Lüscher A.

J Agric Food Chem. 2016 Dec 14;64(49):9307-9316. Epub 2016 Dec 6.


A role for mitotic bookmarking of SOX2 in pluripotency and differentiation.

Deluz C, Friman ET, Strebinger D, Benke A, Raccaud M, Callegari A, Leleu M, Manley S, Suter DM.

Genes Dev. 2016 Nov 15;30(22):2538-2550. Epub 2016 Dec 5.


Efficient Globally Optimal Consensus Maximisation with Tree Search.

Chin TJ, Purkait P, Eriksson A, Suter D.

IEEE Trans Pattern Anal Mach Intell. 2017 Apr;39(4):758-772. doi: 10.1109/TPAMI.2016.2631531. Epub 2016 Nov 23.


Application of the limited-memory quasi-Newton algorithm for multi-dimensional, large flip-angle RF pulses at 7T.

Vinding MS, Brenner D, Tse DH, Vellmer S, Vosegaard T, Suter D, Stöcker T, Maximov II.

MAGMA. 2017 Feb;30(1):29-39. doi: 10.1007/s10334-016-0580-1. Epub 2016 Aug 2.


Increase in Growth Cone Size Correlates with Decrease in Neurite Growth Rate.

Ren Y, Suter DM.

Neural Plast. 2016;2016:3497901. doi: 10.1155/2016/3497901. Epub 2016 May 4.


Tunable and Efficient White Light Phosphorescent Emission Based on Single Component N-Heterocyclic Carbene Platinum(II) Complexes.

Bachmann M, Suter D, Blacque O, Venkatesan K.

Inorg Chem. 2016 May 16;55(10):4733-45. doi: 10.1021/acs.inorgchem.5b02962. Epub 2016 May 2.


Editorial: Neuronal Mechanics and Transport.

Miller KE, Suter DM.

Front Cell Neurosci. 2016 Jan 26;10:1. doi: 10.3389/fncel.2016.00001. eCollection 2016. No abstract available.


Fast Rotation Search with Stereographic Projections for 3D Registration.

Parra Bustos A, Chin TJ, Eriksson A, Li H, Suter D.

IEEE Trans Pattern Anal Mach Intell. 2016 Nov;38(11):2227-2240. Epub 2016 Jan 13.


Robust Model Fitting Using Higher Than Minimal Subset Sampling.

Tennakoon RB, Bab-Hadiashar A, Cao Z, Hoseinnezhad R, Suter D.

IEEE Trans Pattern Anal Mach Intell. 2016 Feb;38(2):350-62. doi: 10.1109/TPAMI.2015.2448103.


Expression dynamics of NADPH oxidases during early zebrafish development.

Weaver CJ, Leung YF, Suter DM.

J Comp Neurol. 2016 Jul 1;524(10):2130-41. doi: 10.1002/cne.23938. Epub 2015 Dec 29.


Large Variability of Proanthocyanidin Content and Composition in Sainfoin (Onobrychis viciifolia).

Malisch CS, Lüscher A, Baert N, Engström MT, Studer B, Fryganas C, Suter D, Mueller-Harvey I, Salminen JP.

J Agric Food Chem. 2015 Dec 2;63(47):10234-42. doi: 10.1021/acs.jafc.5b04946. Epub 2015 Nov 20.

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