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Items: 14

1.

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Kwok-Shing Ng P, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L.

Cell. 2018 Aug 9;174(4):1034-1035. doi: 10.1016/j.cell.2018.07.034. No abstract available.

2.

Predicting Cancer Drug Response using a Recommender System.

Suphavilai C, Bertrand D, Nagarajan N.

Bioinformatics. 2018 Nov 15;34(22):3907-3914. doi: 10.1093/bioinformatics/bty452.

PMID:
29868820
3.

Comprehensive Characterization of Cancer Driver Genes and Mutations.

Bailey MH, Tokheim C, Porta-Pardo E, Sengupta S, Bertrand D, Weerasinghe A, Colaprico A, Wendl MC, Kim J, Reardon B, Ng PK, Jeong KJ, Cao S, Wang Z, Gao J, Gao Q, Wang F, Liu EM, Mularoni L, Rubio-Perez C, Nagarajan N, Cortés-Ciriano I, Zhou DC, Liang WW, Hess JM, Yellapantula VD, Tamborero D, Gonzalez-Perez A, Suphavilai C, Ko JY, Khurana E, Park PJ, Van Allen EM, Liang H; MC3 Working Group; Cancer Genome Atlas Research Network, Lawrence MS, Godzik A, Lopez-Bigas N, Stuart J, Wheeler D, Getz G, Chen K, Lazar AJ, Mills GB, Karchin R, Ding L.

Cell. 2018 Apr 5;173(2):371-385.e18. doi: 10.1016/j.cell.2018.02.060. Erratum in: Cell. 2018 Aug 9;174(4):1034-1035.

4.

Perspective on Oncogenic Processes at the End of the Beginning of Cancer Genomics.

Ding L, Bailey MH, Porta-Pardo E, Thorsson V, Colaprico A, Bertrand D, Gibbs DL, Weerasinghe A, Huang KL, Tokheim C, Cortés-Ciriano I, Jayasinghe R, Chen F, Yu L, Sun S, Olsen C, Kim J, Taylor AM, Cherniack AD, Akbani R, Suphavilai C, Nagarajan N, Stuart JM, Mills GB, Wyczalkowski MA, Vincent BG, Hutter CM, Zenklusen JC, Hoadley KA, Wendl MC, Shmulevich L, Lazar AJ, Wheeler DA, Getz G; Cancer Genome Atlas Research Network.

Cell. 2018 Apr 5;173(2):305-320.e10. doi: 10.1016/j.cell.2018.03.033.

5.

ConsensusDriver Improves upon Individual Algorithms for Predicting Driver Alterations in Different Cancer Types and Individual Patients.

Bertrand D, Drissler S, Chia BK, Koh JY, Li C, Suphavilai C, Tan IB, Nagarajan N.

Cancer Res. 2018 Jan 1;78(1):290-301. doi: 10.1158/0008-5472.CAN-17-1345. Epub 2017 Dec 19.

6.

A method for developing regulatory gene set networks to characterize complex biological systems.

Suphavilai C, Zhu L, Chen JY.

BMC Genomics. 2015;16 Suppl 11:S4. doi: 10.1186/1471-2164-16-S11-S4. Epub 2015 Nov 10.

7.

PAGER: constructing PAGs and new PAG-PAG relationships for network biology.

Yue Z, Kshirsagar MM, Nguyen T, Suphavilai C, Neylon MT, Zhu L, Ratliff T, Chen JY.

Bioinformatics. 2015 Jun 15;31(12):i250-7. doi: 10.1093/bioinformatics/btv265.

8.

Determination of the pyrethroid insecticide metabolite 3-PBA in plasma and urine samples from farmer and consumer groups in northern Thailand.

Thiphom S, Prapamontol T, Chantara S, Mangklabruks A, Suphavilai C, Ahn KC, Gee SJ, Hammock BD.

J Environ Sci Health B. 2014;49(1):15-22. doi: 10.1080/03601234.2013.836862.

9.

An enzyme-linked immunosorbent assay for detecting 3-phenoxybenzoic acid in plasma and its application in farmers and consumers.

Thiphom S, Prapamontol T, Chantara S, Mangklabruks A, Suphavilai C, Ahn KC, Gee SJ, Hammock BD.

Anal Methods. 2012 Oct 24;4(11):3772-3778.

10.

A 39-kDa capsular protein is a major cross-protection factor as demonstrated by protection of chickens with a live attenuated Pasteurella multocida strain of P-1059.

Sthitmatee N, Yano T, Lampang KN, Suphavilai C, Kataoka Y, Sawada T.

J Vet Med Sci. 2013 Jul 31;75(7):923-8. Epub 2013 Mar 1.

11.

Short-lived IFN-γ effector responses, but long-lived IL-10 memory responses, to malaria in an area of low malaria endemicity.

Wipasa J, Okell L, Sakkhachornphop S, Suphavilai C, Chawansuntati K, Liewsaree W, Hafalla JC, Riley EM.

PLoS Pathog. 2011 Feb 10;7(2):e1001281. doi: 10.1371/journal.ppat.1001281.

12.

Production of monoclonal antibody to acaricide dicofol and its derivatives.

Hongsibsong S, Prapamontol T, Suphavilai C, Wipasa J, Pattarawarapan M, Kasinrerk W.

Hybridoma (Larchmt). 2010 Dec;29(6):495-500. doi: 10.1089/hyb.2010.0051. Epub 2010 Nov 30.

PMID:
21118018
13.

Long-lived antibody and B Cell memory responses to the human malaria parasites, Plasmodium falciparum and Plasmodium vivax.

Wipasa J, Suphavilai C, Okell LC, Cook J, Corran PH, Thaikla K, Liewsaree W, Riley EM, Hafalla JC.

PLoS Pathog. 2010 Feb 19;6(2):e1000770. doi: 10.1371/journal.ppat.1000770.

14.

Analysis of circumsporozoite protein-specific immune responses following recent infection with Plasmodium vivax.

Suphavilai C, Looareesuwan S, Good MF.

Am J Trop Med Hyg. 2004 Jul;71(1):29-39.

PMID:
15238685

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