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Items: 50

1.

Dysregulated Brain Dynamics in a Triple-Network Saliency Model of Schizophrenia and Its Relation to Psychosis.

Supekar K, Cai W, Krishnadas R, Palaniyappan L, Menon V.

Biol Psychiatry. 2018 Aug 1. pii: S0006-3223(18)31715-3. doi: 10.1016/j.biopsych.2018.07.020. [Epub ahead of print]

PMID:
30177256
2.

Deficits in mesolimbic reward pathway underlie social interaction impairments in children with autism.

Supekar K, Kochalka J, Schaer M, Wakeman H, Qin S, Padmanabhan A, Menon V.

Brain. 2018 Sep 1;141(9):2795-2805. doi: 10.1093/brain/awy191.

PMID:
30016410
3.

Aberrant Time-Varying Cross-Network Interactions in Children With Attention-Deficit/Hyperactivity Disorder and the Relation to Attention Deficits.

Cai W, Chen T, Szegletes L, Supekar K, Menon V.

Biol Psychiatry Cogn Neurosci Neuroimaging. 2018 Mar;3(3):263-273. doi: 10.1016/j.bpsc.2017.10.005. Epub 2017 Nov 7.

PMID:
29486868
4.

Bayesian switching factor analysis for estimating time-varying functional connectivity in fMRI.

Taghia J, Ryali S, Chen T, Supekar K, Cai W, Menon V.

Neuroimage. 2017 Jul 15;155:271-290. doi: 10.1016/j.neuroimage.2017.02.083. Epub 2017 Mar 4.

5.

The influence of sex and age on prevalence rates of comorbid conditions in autism.

Supekar K, Iyer T, Menon V.

Autism Res. 2017 May;10(5):778-789. doi: 10.1002/aur.1741. Epub 2017 Feb 11.

PMID:
28188687
6.

Temporal Dynamics and Developmental Maturation of Salience, Default and Central-Executive Network Interactions Revealed by Variational Bayes Hidden Markov Modeling.

Ryali S, Supekar K, Chen T, Kochalka J, Cai W, Nicholas J, Padmanabhan A, Menon V.

PLoS Comput Biol. 2016 Dec 13;12(12):e1005138. doi: 10.1371/journal.pcbi.1005138. eCollection 2016 Dec.

7.

Reconfiguration of parietal circuits with cognitive tutoring in elementary school children.

Jolles D, Supekar K, Richardson J, Tenison C, Ashkenazi S, Rosenberg-Lee M, Fuchs L, Menon V.

Cortex. 2016 Oct;83:231-45. doi: 10.1016/j.cortex.2016.08.004. Epub 2016 Aug 13.

8.

Distinct Global Brain Dynamics and Spatiotemporal Organization of the Salience Network.

Chen T, Cai W, Ryali S, Supekar K, Menon V.

PLoS Biol. 2016 Jun 7;14(6):e1002469. doi: 10.1371/journal.pbio.1002469. eCollection 2016 Jun.

9.

Multivariate dynamical systems-based estimation of causal brain interactions in fMRI: Group-level validation using benchmark data, neurophysiological models and human connectome project data.

Ryali S, Chen T, Supekar K, Tu T, Kochalka J, Cai W, Menon V.

J Neurosci Methods. 2016 Aug 1;268:142-53. doi: 10.1016/j.jneumeth.2016.03.010. Epub 2016 Mar 22.

10.

Combining optogenetic stimulation and fMRI to validate a multivariate dynamical systems model for estimating causal brain interactions.

Ryali S, Shih YI, Chen T, Kochalka J, Albaugh D, Fang Z, Supekar K, Lee JH, Menon V.

Neuroimage. 2016 May 15;132:398-405. doi: 10.1016/j.neuroimage.2016.02.067. Epub 2016 Mar 2.

11.

Parietal hyper-connectivity, aberrant brain organization, and circuit-based biomarkers in children with mathematical disabilities.

Jolles D, Ashkenazi S, Kochalka J, Evans T, Richardson J, Rosenberg-Lee M, Zhao H, Supekar K, Chen T, Menon V.

Dev Sci. 2016 Jul;19(4):613-31. doi: 10.1111/desc.12399. Epub 2016 Feb 14.

12.

Aberrant Cross-Brain Network Interaction in Children With Attention-Deficit/Hyperactivity Disorder and Its Relation to Attention Deficits: A Multisite and Cross-Site Replication Study.

Cai W, Chen T, Szegletes L, Supekar K, Menon V.

Biol Psychiatry. 2015 Nov 2. pii: S0006-3223(15)00901-4. doi: 10.1016/j.biopsych.2015.10.017. [Epub ahead of print] Retraction in: Biol Psychiatry. 2017 Jan 1;81(1):86.

PMID:
26805582
13.

Cognitive tutoring induces widespread neuroplasticity and remediates brain function in children with mathematical learning disabilities.

Iuculano T, Rosenberg-Lee M, Richardson J, Tenison C, Fuchs L, Supekar K, Menon V.

Nat Commun. 2015 Sep 30;6:8453. doi: 10.1038/ncomms9453.

14.

Remediation of Childhood Math Anxiety and Associated Neural Circuits through Cognitive Tutoring.

Supekar K, Iuculano T, Chen L, Menon V.

J Neurosci. 2015 Sep 9;35(36):12574-83. doi: 10.1523/JNEUROSCI.0786-15.2015.

15.
16.

Large-scale intrinsic functional network organization along the long axis of the human medial temporal lobe.

Qin S, Duan X, Supekar K, Chen H, Chen T, Menon V.

Brain Struct Funct. 2016 Jul;221(6):3237-58. doi: 10.1007/s00429-015-1098-4. Epub 2015 Sep 3.

17.

Sex differences in cortical volume and gyrification in autism.

Schaer M, Kochalka J, Padmanabhan A, Supekar K, Menon V.

Mol Autism. 2015 Jul 4;6:42. doi: 10.1186/s13229-015-0035-y. eCollection 2015.

18.

Plasticity of left perisylvian white-matter tracts is associated with individual differences in math learning.

Jolles D, Wassermann D, Chokhani R, Richardson J, Tenison C, Bammer R, Fuchs L, Supekar K, Menon V.

Brain Struct Funct. 2016 Apr;221(3):1337-51. doi: 10.1007/s00429-014-0975-6. Epub 2015 Jan 21.

19.

Role of the anterior insular cortex in integrative causal signaling during multisensory auditory-visual attention.

Chen T, Michels L, Supekar K, Kochalka J, Ryali S, Menon V.

Eur J Neurosci. 2015 Jan;41(2):264-74. doi: 10.1111/ejn.12764. Epub 2014 Oct 29.

20.

Brain State Differentiation and Behavioral Inflexibility in Autism.

Uddin LQ, Supekar K, Lynch CJ, Cheng KM, Odriozola P, Barth ME, Phillips J, Feinstein C, Abrams DA, Menon V.

Cereb Cortex. 2015 Dec;25(12):4740-7. doi: 10.1093/cercor/bhu161. Epub 2014 Jul 29.

21.

A robust classifier to distinguish noise from fMRI independent components.

Sochat V, Supekar K, Bustillo J, Calhoun V, Turner JA, Rubin DL.

PLoS One. 2014 Apr 18;9(4):e95493. doi: 10.1371/journal.pone.0095493. eCollection 2014.

22.

Amygdala subregional structure and intrinsic functional connectivity predicts individual differences in anxiety during early childhood.

Qin S, Young CB, Duan X, Chen T, Supekar K, Menon V.

Biol Psychiatry. 2014 Jun 1;75(11):892-900. doi: 10.1016/j.biopsych.2013.10.006. Epub 2013 Oct 11.

23.

Brain hyperconnectivity in children with autism and its links to social deficits.

Supekar K, Uddin LQ, Khouzam A, Phillips J, Gaillard WD, Kenworthy LE, Yerys BE, Vaidya CJ, Menon V.

Cell Rep. 2013 Nov 14;5(3):738-47. doi: 10.1016/j.celrep.2013.10.001. Epub 2013 Nov 7.

24.

Reconceptualizing functional brain connectivity in autism from a developmental perspective.

Uddin LQ, Supekar K, Menon V.

Front Hum Neurosci. 2013 Aug 7;7:458. doi: 10.3389/fnhum.2013.00458. eCollection 2013.

25.

Brain organization underlying superior mathematical abilities in children with autism.

Iuculano T, Rosenberg-Lee M, Supekar K, Lynch CJ, Khouzam A, Phillips J, Uddin LQ, Menon V.

Biol Psychiatry. 2014 Feb 1;75(3):223-30. doi: 10.1016/j.biopsych.2013.06.018. Epub 2013 Aug 15.

26.

Salience network-based classification and prediction of symptom severity in children with autism.

Uddin LQ, Supekar K, Lynch CJ, Khouzam A, Phillips J, Feinstein C, Ryali S, Menon V.

JAMA Psychiatry. 2013 Aug;70(8):869-79. doi: 10.1001/jamapsychiatry.2013.104.

27.

Underconnectivity between voice-selective cortex and reward circuitry in children with autism.

Abrams DA, Lynch CJ, Cheng KM, Phillips J, Supekar K, Ryali S, Uddin LQ, Menon V.

Proc Natl Acad Sci U S A. 2013 Jul 16;110(29):12060-5. doi: 10.1073/pnas.1302982110. Epub 2013 Jun 17.

28.

Neural predictors of individual differences in response to math tutoring in primary-grade school children.

Supekar K, Swigart AG, Tenison C, Jolles DD, Rosenberg-Lee M, Fuchs L, Menon V.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8230-5. doi: 10.1073/pnas.1222154110. Epub 2013 Apr 29.

29.

Default mode network in childhood autism: posteromedial cortex heterogeneity and relationship with social deficits.

Lynch CJ, Uddin LQ, Supekar K, Khouzam A, Phillips J, Menon V.

Biol Psychiatry. 2013 Aug 1;74(3):212-9. doi: 10.1016/j.biopsych.2012.12.013. Epub 2013 Jan 31.

30.

A parcellation scheme based on von Mises-Fisher distributions and Markov random fields for segmenting brain regions using resting-state fMRI.

Ryali S, Chen T, Supekar K, Menon V.

Neuroimage. 2013 Jan 15;65:83-96. doi: 10.1016/j.neuroimage.2012.09.067. Epub 2012 Oct 4.

31.

Immature integration and segregation of emotion-related brain circuitry in young children.

Qin S, Young CB, Supekar K, Uddin LQ, Menon V.

Proc Natl Acad Sci U S A. 2012 May 15;109(20):7941-6. doi: 10.1073/pnas.1120408109. Epub 2012 Apr 30.

32.

Developmental maturation of dynamic causal control signals in higher-order cognition: a neurocognitive network model.

Supekar K, Menon V.

PLoS Comput Biol. 2012 Feb;8(2):e1002374. doi: 10.1371/journal.pcbi.1002374. Epub 2012 Feb 2.

33.

Dynamic reconfiguration of structural and functional connectivity across core neurocognitive brain networks with development.

Uddin LQ, Supekar KS, Ryali S, Menon V.

J Neurosci. 2011 Dec 14;31(50):18578-89. doi: 10.1523/JNEUROSCI.4465-11.2011.

34.

Estimation of functional connectivity in fMRI data using stability selection-based sparse partial correlation with elastic net penalty.

Ryali S, Chen T, Supekar K, Menon V.

Neuroimage. 2012 Feb 15;59(4):3852-61. doi: 10.1016/j.neuroimage.2011.11.054. Epub 2011 Dec 1.

35.

Multivariate dynamical systems models for estimating causal interactions in fMRI.

Ryali S, Supekar K, Chen T, Menon V.

Neuroimage. 2011 Jan 15;54(2):807-23. doi: 10.1016/j.neuroimage.2010.09.052. Epub 2010 Sep 25.

36.

Typical and atypical development of functional human brain networks: insights from resting-state FMRI.

Uddin LQ, Supekar K, Menon V.

Front Syst Neurosci. 2010 May 21;4:21. doi: 10.3389/fnsys.2010.00021. eCollection 2010.

37.

Development of functional and structural connectivity within the default mode network in young children.

Supekar K, Uddin LQ, Prater K, Amin H, Greicius MD, Menon V.

Neuroimage. 2010 Aug 1;52(1):290-301. doi: 10.1016/j.neuroimage.2010.04.009. Epub 2010 Apr 10.

38.

Sparse logistic regression for whole-brain classification of fMRI data.

Ryali S, Supekar K, Abrams DA, Menon V.

Neuroimage. 2010 Jun;51(2):752-64. doi: 10.1016/j.neuroimage.2010.02.040. Epub 2010 Feb 24.

39.

Dissociable connectivity within human angular gyrus and intraparietal sulcus: evidence from functional and structural connectivity.

Uddin LQ, Supekar K, Amin H, Rykhlevskaia E, Nguyen DA, Greicius MD, Menon V.

Cereb Cortex. 2010 Nov;20(11):2636-46. doi: 10.1093/cercor/bhq011. Epub 2010 Feb 12.

40.

Development of large-scale functional brain networks in children.

Supekar K, Musen M, Menon V.

PLoS Biol. 2009 Jul;7(7):e1000157. doi: 10.1371/journal.pbio.1000157. Epub 2009 Jul 21.

41.

Unsupervised method for automatic construction of a disease dictionary from a large free text collection.

Xu R, Supekar K, Morgan A, Das A, Garber A.

AMIA Annu Symp Proc. 2008 Nov 6:820-4.

42.

Network analysis of intrinsic functional brain connectivity in Alzheimer's disease.

Supekar K, Menon V, Rubin D, Musen M, Greicius MD.

PLoS Comput Biol. 2008 Jun 27;4(6):e1000100. doi: 10.1371/journal.pcbi.1000100.

43.

Resting-state functional connectivity reflects structural connectivity in the default mode network.

Greicius MD, Supekar K, Menon V, Dougherty RF.

Cereb Cortex. 2009 Jan;19(1):72-8. doi: 10.1093/cercor/bhn059. Epub 2008 Apr 9.

44.

Knowledge Zone: a public repository of peer-reviewed biomedical ontologies.

Supekar K, Rubin D, Noy N, Musen M.

Stud Health Technol Inform. 2007;129(Pt 1):812-6.

PMID:
17911829
45.

Extracting subject demographic information from abstracts of randomized clinical trial reports.

Xu R, Garten Y, Supekar KS, Das AK, Altman RB, Garber AM.

Stud Health Technol Inform. 2007;129(Pt 1):550-4.

PMID:
17911777
46.
47.

Ontology-based annotation and query of tissue microarray data.

Shah NH, Rubin DL, Supekar KS, Musen MA.

AMIA Annu Symp Proc. 2006:709-13.

48.

Ontology metadata to support the building of a library of biomedical ontologies.

Supekar K, Musen M.

AMIA Annu Symp Proc. 2005:1126. No abstract available.

49.

Representing lexical components of medical terminologies in OWL.

Supekar K, Chute CG, Solbrig H.

AMIA Annu Symp Proc. 2005:719-23.

50.

Ontology integration: experience with medical terminologies.

Lee Y, Supekar K, Geller J.

Comput Biol Med. 2006 Jul-Aug;36(7-8):893-919. Epub 2005 Sep 12.

PMID:
16157328

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