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Probiotic supplementation restores normal microbiota composition and function in antibiotic-treated and in caesarean-born infants.

Korpela K, Salonen A, Vepsäläinen O, Suomalainen M, Kolmeder C, Varjosalo M, Miettinen S, Kukkonen K, Savilahti E, Kuitunen M, de Vos WM.

Microbiome. 2018 Oct 16;6(1):182. doi: 10.1186/s40168-018-0567-4.


Single entity resolution valving of nanoscopic species in liquids.

Eberle P, Höller C, Müller P, Suomalainen M, Greber UF, Eghlidi H, Poulikakos D.

Nat Nanotechnol. 2018 Jul;13(7):578-582. doi: 10.1038/s41565-018-0150-y. Epub 2018 May 21.


Lung macrophage scavenger receptor SR-A6 (MARCO) is an adenovirus type-specific virus entry receptor.

Stichling N, Suomalainen M, Flatt JW, Schmid M, Pacesa M, Hemmi S, Jungraithmayr W, Maler MD, Freudenberg MA, Plückthun A, May T, Köster M, Fejer G, Greber UF.

PLoS Pathog. 2018 Mar 9;14(3):e1006914. doi: 10.1371/journal.ppat.1006914. eCollection 2018 Mar.


Adenoviral vector with shield and adapter increases tumor specificity and escapes liver and immune control.

Schmid M, Ernst P, Honegger A, Suomalainen M, Zimmermann M, Braun L, Stauffer S, Thom C, Dreier B, Eibauer M, Kipar A, Vogel V, Greber UF, Medalia O, Plückthun A.

Nat Commun. 2018 Jan 31;9(1):450. doi: 10.1038/s41467-017-02707-6.


Erratum for Maler et al., "Key Role of the Scavenger Receptor MARCO in Mediating Adenovirus Infection and Subsequent Innate Responses of Macrophages".

Maler MD, Nielsen PJ, Stichling N, Cohen I, Ruzsics Z, Wood C, Engelhard P, Suomalainen M, Gyory I, Huber M, Müller-Quernheim J, Schamel WW, Gordon S, Jakob T, Martin SF, Jahnen-Dechent W, Greber UF, Freudenberg MA, Fejer G.

MBio. 2017 Sep 26;8(5). pii: e01445-17. doi: 10.1128/mBio.01445-17. No abstract available.


Key Role of the Scavenger Receptor MARCO in Mediating Adenovirus Infection and Subsequent Innate Responses of Macrophages.

Maler MD, Nielsen PJ, Stichling N, Cohen I, Ruzsics Z, Wood C, Engelhard P, Suomalainen M, Gyory I, Huber M, Müller-Quernheim J, Schamel WWA, Gordon S, Jakob T, Martin SF, Jahnen-Dechent W, Greber UF, Freudenberg MA, Fejer G.

MBio. 2017 Aug 1;8(4). pii: e00670-17. doi: 10.1128/mBio.00670-17. Erratum in: MBio. 2017 Sep 26;8(5):.


The adenovirus major core protein VII is dispensable for virion assembly but is essential for lytic infection.

Ostapchuk P, Suomalainen M, Zheng Y, Boucke K, Greber UF, Hearing P.

PLoS Pathog. 2017 Jun 19;13(6):e1006455. doi: 10.1371/journal.ppat.1006455. eCollection 2017 Jun.


Cell Cycle-Dependent Kinase Cdk9 Is a Postexposure Drug Target against Human Adenoviruses.

Prasad V, Suomalainen M, Hemmi S, Greber UF.

ACS Infect Dis. 2017 Jun 9;3(6):398-405. doi: 10.1021/acsinfecdis.7b00009. Epub 2017 Apr 27.


Plaque2.0-A High-Throughput Analysis Framework to Score Virus-Cell Transmission and Clonal Cell Expansion.

Yakimovich A, Andriasyan V, Witte R, Wang IH, Prasad V, Suomalainen M, Greber UF.

PLoS One. 2015 Sep 28;10(9):e0138760. doi: 10.1371/journal.pone.0138760. eCollection 2015.


Fluorescence Tracking of Genome Release during Mechanical Unpacking of Single Viruses.

Ortega-Esteban A, Bodensiek K, San Martín C, Suomalainen M, Greber UF, de Pablo PJ, Schaap IA.

ACS Nano. 2015 Nov 24;9(11):10571-9. doi: 10.1021/acsnano.5b03020. Epub 2015 Sep 24.


Co-option of Membrane Wounding Enables Virus Penetration into Cells.

Luisoni S, Suomalainen M, Boucke K, Tanner LB, Wenk MR, Guan XL, Grzybek M, Coskun Ü, Greber UF.

Cell Host Microbe. 2015 Jul 8;18(1):75-85. doi: 10.1016/j.chom.2015.06.006.


Chemical induction of unfolded protein response enhances cancer cell killing through lytic virus infection.

Prasad V, Suomalainen M, Pennauer M, Yakimovich A, Andriasyan V, Hemmi S, Greber UF.

J Virol. 2014 Nov;88(22):13086-98. doi: 10.1128/JVI.02156-14. Epub 2014 Sep 3.


Tracking viral genomes in host cells at single-molecule resolution.

Wang IH, Suomalainen M, Andriasyan V, Kilcher S, Mercer J, Neef A, Luedtke NW, Greber UF.

Cell Host Microbe. 2013 Oct 16;14(4):468-80. doi: 10.1016/j.chom.2013.09.004.


A direct and versatile assay measuring membrane penetration of adenovirus in single cells.

Suomalainen M, Luisoni S, Boucke K, Bianchi S, Engel DA, Greber UF.

J Virol. 2013 Nov;87(22):12367-79. doi: 10.1128/JVI.01833-13. Epub 2013 Sep 11.


Human single-chain urokinase is activated by the omptins PgtE of Salmonella enterica and Pla of Yersinia pestis despite mutations of active site residues.

Järvinen HM, Laakkonen L, Haiko J, Johansson T, Juuti K, Suomalainen M, Buchrieser C, Kalkkinen N, Korhonen TK.

Mol Microbiol. 2013 Aug;89(3):507-17. doi: 10.1111/mmi.12293. Epub 2013 Jul 11.


Uncoating of non-enveloped viruses.

Suomalainen M, Greber UF.

Curr Opin Virol. 2013 Feb;3(1):27-33. doi: 10.1016/j.coviro.2012.12.004. Epub 2013 Jan 16. Review.


Regulation of a viral proteinase by a peptide and DNA in one-dimensional space: I. binding to DNA AND to hexon of the precursor to protein VI, pVI, of human adenovirus.

Graziano V, McGrath WJ, Suomalainen M, Greber UF, Freimuth P, Blainey PC, Luo G, Xie XS, Mangel WF.

J Biol Chem. 2013 Jan 18;288(3):2059-67. doi: 10.1074/jbc.M112.377150. Epub 2012 Oct 7.


Drifting motions of the adenovirus receptor CAR and immobile integrins initiate virus uncoating and membrane lytic protein exposure.

Burckhardt CJ, Suomalainen M, Schoenenberger P, Boucke K, Hemmi S, Greber UF.

Cell Host Microbe. 2011 Aug 18;10(2):105-17. doi: 10.1016/j.chom.2011.07.006.


Tethered virions are intermediates in the assembly and release of HIV-1 particles.

Karetnikov A, Suomalainen M.

Virology. 2010 Nov 25;407(2):289-95. doi: 10.1016/j.virol.2010.08.020. Epub 2010 Sep 20.


Notch signalling is required for the survival of epithelial stem cells in the continuously growing mouse incisor.

Felszeghy S, Suomalainen M, Thesleff I.

Differentiation. 2010 Nov-Dec;80(4-5):241-8. doi: 10.1016/j.diff.2010.06.004. Epub 2010 Aug 6.


Splitting placodes: effects of bone morphogenetic protein and Activin on the patterning and identity of mouse incisors.

Munne PM, Felszeghy S, Jussila M, Suomalainen M, Thesleff I, Jernvall J.

Evol Dev. 2010 Jul-Aug;12(4):383-92. doi: 10.1111/j.1525-142X.2010.00425.x.


Temperature-induced changes in the lipopolysaccharide of Yersinia pestis affect plasminogen activation by the pla surface protease.

Suomalainen M, Lobo LA, Brandenburg K, Lindner B, Virkola R, Knirel YA, Anisimov AP, Holst O, Korhonen TK.

Infect Immun. 2010 Jun;78(6):2644-52. doi: 10.1128/IAI.01329-09. Epub 2010 Apr 5.


Invited review: Breaking barriers--attack on innate immune defences by omptin surface proteases of enterobacterial pathogens.

Haiko J, Suomalainen M, Ojala T, Lähteenmäki K, Korhonen TK.

Innate Immun. 2009 Apr;15(2):67-80. doi: 10.1177/1753425909102559. Review.


Using every trick in the book: the Pla surface protease of Yersinia pestis.

Suomalainen M, Haiko J, Ramu P, Lobo L, Kukkonen M, Westerlund-Wikström B, Virkola R, Lähteenmäki K, Korhonen TK.

Adv Exp Med Biol. 2007;603:268-78. Review.


Activation of pro-matrix metalloproteinase-9 and degradation of gelatin by the surface protease PgtE of Salmonella enterica serovar Typhimurium.

Ramu P, Lobo LA, Kukkonen M, Bjur E, Suomalainen M, Raukola H, Miettinen M, Julkunen I, Holst O, Rhen M, Korhonen TK, Lähteenmäki K.

Int J Med Microbiol. 2008 Apr;298(3-4):263-78. Epub 2007 Sep 20.


The Vpu-regulated endocytosis of HIV-1 Gag is clathrin-independent.

Harila K, Salminen A, Prior I, Hinkula J, Suomalainen M.

Virology. 2007 Dec 20;369(2):299-308. Epub 2007 Sep 5.


Affecting tooth morphology and renewal by fine-tuning the signals mediating cell and tissue interactions.

Thesleff I, Järvinen E, Suomalainen M.

Novartis Found Symp. 2007;284:142-53; discussion 153-63. Review.


Regulation of epithelial stem cells in tooth regeneration.

Thesleff I, Wang XP, Suomalainen M.

C R Biol. 2007 Jun-Jul;330(6-7):561-4. Epub 2007 May 9. Review.


An integrated gene regulatory network controls stem cell proliferation in teeth.

Wang XP, Suomalainen M, Felszeghy S, Zelarayan LC, Alonso MT, Plikus MV, Maas RL, Chuong CM, Schimmang T, Thesleff I.

PLoS Biol. 2007 Jun;5(6):e159.


Vpu and Tsg101 regulate intracellular targeting of the human immunodeficiency virus type 1 core protein precursor Pr55gag.

Harila K, Prior I, Sjöberg M, Salminen A, Hinkula J, Suomalainen M.

J Virol. 2006 Apr;80(8):3765-72.


Meeting report: EMBO workshop 'Cell Biology of Virus Infection', September 25-29, 2004, EMBL, Heidelberg, Germany.

Sodeik B, Schramm B, Suomalainen M, Locker JK.

Traffic. 2005 Apr;6(4):351-6. No abstract available.


Follistatin regulates enamel patterning in mouse incisors by asymmetrically inhibiting BMP signaling and ameloblast differentiation.

Wang XP, Suomalainen M, Jorgez CJ, Matzuk MM, Werner S, Thesleff I.

Dev Cell. 2004 Nov;7(5):719-30.


Modulation of activin/bone morphogenetic protein signaling by follistatin is required for the morphogenesis of mouse molar teeth.

Wang XP, Suomalainen M, Jorgez CJ, Matzuk MM, Wankell M, Werner S, Thesleff I.

Dev Dyn. 2004 Sep;231(1):98-108.


Lack of O-antigen is essential for plasminogen activation by Yersinia pestis and Salmonella enterica.

Kukkonen M, Suomalainen M, Kyllönen P, Lähteenmäki K, Lång H, Virkola R, Helander IM, Holst O, Korhonen TK.

Mol Microbiol. 2004 Jan;51(1):215-25.


Yersinia pestis Pla has multiple virulence-associated functions.

Lähteenmäki K, Kukkonen M, Jaatinen S, Suomalainen M, Soranummi H, Virkola R, Lång H, Korhonen TK.

Adv Exp Med Biol. 2003;529:141-5. No abstract available.


Lipid rafts and assembly of enveloped viruses.

Suomalainen M.

Traffic. 2002 Oct;3(10):705-9. Review.


Meeting report from the EMBO workshop "The Cell Biology of Virus Infection", Heidelberg, Germany, 22-26 September 2001.

Krijnse-Locker J, Sodeik B, Suomalainen M.

Traffic. 2002 Mar;3(3):233-5. No abstract available.


Protein regions important for plasminogen activation and inactivation of alpha2-antiplasmin in the surface protease Pla of Yersinia pestis.

Kukkonen M, Lähteenmäki K, Suomalainen M, Kalkkinen N, Emödy L, Lång H, Korhonen TK.

Mol Microbiol. 2001 Jun;40(5):1097-111.


Adenovirus-activated PKA and p38/MAPK pathways boost microtubule-mediated nuclear targeting of virus.

Suomalainen M, Nakano MY, Boucke K, Keller S, Greber UF.

EMBO J. 2001 Mar 15;20(6):1310-9.


Microtubule-dependent plus- and minus end-directed motilities are competing processes for nuclear targeting of adenovirus.

Suomalainen M, Nakano MY, Keller S, Boucke K, Stidwill RP, Greber UF.

J Cell Biol. 1999 Feb 22;144(4):657-72.


Lack of effect of leptin on the behaviour of mice predicting the level of anxiety and depression.

Suomalainen M, Männistö PT.

Pharmacol Toxicol. 1998 Sep;83(3):139-42. No abstract available.


The role of the nuclear pore complex in adenovirus DNA entry.

Greber UF, Suomalainen M, Stidwill RP, Boucke K, Ebersold MW, Helenius A.

EMBO J. 1997 Oct 1;16(19):5998-6007.


Multiple mechanisms for the inhibition of entry and uncoating of superinfecting Semliki Forest virus.

Singh IR, Suomalainen M, Varadarajan S, Garoff H, Helenius A.

Virology. 1997 Apr 28;231(1):59-71.


Targeting of Moloney murine leukemia virus gag precursor to the site of virus budding.

Suomalainen M, Hultenby K, Garoff H.

J Cell Biol. 1996 Dec;135(6 Pt 2):1841-52.


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