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Items: 29

1.

TAMMiCol: Tool for analysis of the morphology of microbial colonies.

Tronnolone H, Gardner JM, Sundstrom JF, Jiranek V, Oliver SG, Binder BJ.

PLoS Comput Biol. 2018 Dec 3;14(12):e1006629. doi: 10.1371/journal.pcbi.1006629. eCollection 2018 Dec.

2.

Integrative Analysis of Three RNA Sequencing Methods Identifies Mutually Exclusive Exons of MADS-Box Isoforms During Early Bud Development in Picea abies.

Akhter S, Kretzschmar WW, Nordal V, Delhomme N, Street NR, Nilsson O, Emanuelsson O, Sundström JF.

Front Plant Sci. 2018 Nov 13;9:1625. doi: 10.3389/fpls.2018.01625. eCollection 2018.

3.

Diffusion-Limited Growth of Microbial Colonies.

Tronnolone H, Tam A, Szenczi Z, Green JEF, Balasuriya S, Tek EL, Gardner JM, Sundstrom JF, Jiranek V, Oliver SG, Binder BJ.

Sci Rep. 2018 Apr 16;8(1):5992. doi: 10.1038/s41598-018-23649-z.

4.

Nutrient-limited growth with non-linear cell diffusion as a mechanism for floral pattern formation in yeast biofilms.

Tam A, Green JEF, Balasuriya S, Tek EL, Gardner JM, Sundstrom JF, Jiranek V, Binder BJ.

J Theor Biol. 2018 Jul 7;448:122-141. doi: 10.1016/j.jtbi.2018.04.004. Epub 2018 Apr 7.

PMID:
29630992
5.

Directed evolution of Oenococcus oeni strains for more efficient malolactic fermentation in a multi-stressor wine environment.

Jiang J, Sumby KM, Sundstrom JF, Grbin PR, Jiranek V.

Food Microbiol. 2018 Aug;73:150-159. doi: 10.1016/j.fm.2018.01.005. Epub 2018 Jan 5.

PMID:
29526200
6.

Evaluation of the ability of commercial wine yeasts to form biofilms (mats) and adhere to plastic: implications for the microbiota of the winery environment.

Tek EL, Sundstrom JF, Gardner JM, Oliver SG, Jiranek V.

FEMS Microbiol Ecol. 2018 Feb 1;94(2). doi: 10.1093/femsec/fix188.

PMID:
29394344
7.

Application of directed evolution to develop ethanol tolerant Oenococcus oeni for more efficient malolactic fermentation.

Betteridge AL, Sumby KM, Sundstrom JF, Grbin PR, Jiranek V.

Appl Microbiol Biotechnol. 2018 Jan;102(2):921-932. doi: 10.1007/s00253-017-8593-x. Epub 2017 Nov 17.

PMID:
29150706
8.

Quantifying the dominant growth mechanisms of dimorphic yeast using a lattice-based model.

Tronnolone H, Gardner JM, Sundstrom JF, Jiranek V, Oliver SG, Binder BJ.

J R Soc Interface. 2017 Sep;14(134). pii: 20170314. doi: 10.1098/rsif.2017.0314.

9.

Spatially resolved transcriptome profiling in model plant species.

Giacomello S, Salmén F, Terebieniec BK, Vickovic S, Navarro JF, Alexeyenko A, Reimegård J, McKee LS, Mannapperuma C, Bulone V, Ståhl PL, Sundström JF, Street NR, Lundeberg J.

Nat Plants. 2017 May 8;3:17061. doi: 10.1038/nplants.2017.61.

PMID:
28481330
10.

Genome-wide identification of physically clustered genes suggests chromatin-level co-regulation in male reproductive development in Arabidopsis thaliana.

Reimegård J, Kundu S, Pendle A, Irish VF, Shaw P, Nakayama N, Sundström JF, Emanuelsson O.

Nucleic Acids Res. 2017 Apr 7;45(6):3253-3265. doi: 10.1093/nar/gkx087.

11.

Sequenced genomes and rapidly emerging technologies pave the way for conifer evolutionary developmental biology.

Uddenberg D, Akhter S, Ramachandran P, Sundström JF, Carlsbecker A.

Front Plant Sci. 2015 Nov 3;6:970. doi: 10.3389/fpls.2015.00970. eCollection 2015. Review.

12.

Quantifying two-dimensional filamentous and invasive growth spatial patterns in yeast colonies.

Binder BJ, Sundstrom JF, Gardner JM, Jiranek V, Oliver SG.

PLoS Comput Biol. 2015 Feb 26;11(2):e1004070. doi: 10.1371/journal.pcbi.1004070. eCollection 2015 Feb.

13.

Genome-wide identification of the Fermentome; genes required for successful and timely completion of wine-like fermentation by Saccharomyces cerevisiae.

Walker ME, Nguyen TD, Liccioli T, Schmid F, Kalatzis N, Sundstrom JF, Gardner JM, Jiranek V.

BMC Genomics. 2014 Jul 3;15:552. doi: 10.1186/1471-2164-15-552.

14.

A selection strategy in plant transformation based on antisense oligodeoxynucleotide inhibition.

Xie Z, Sundström JF, Jin Y, Liu C, Jansson C, Sun C.

Plant J. 2014 Mar;77(6):954-61. doi: 10.1111/tpj.12433. Epub 2014 Mar 8.

15.

Molecular control of normal and acrocona mutant seed cone development in Norway spruce (Picea abies) and the evolution of conifer ovule-bearing organs.

Carlsbecker A, Sundström JF, Englund M, Uddenberg D, Izquierdo L, Kvarnheden A, Vergara-Silva F, Engström P.

New Phytol. 2013 Oct;200(1):261-75. doi: 10.1111/nph.12360. Epub 2013 Jun 17.

16.

Early cone setting in Picea abies acrocona is associated with increased transcriptional activity of a MADS box transcription factor.

Uddenberg D, Reimegård J, Clapham D, Almqvist C, von Arnold S, Emanuelsson O, Sundström JF.

Plant Physiol. 2013 Feb;161(2):813-23. doi: 10.1104/pp.112.207746. Epub 2012 Dec 7.

17.
18.

European agricultural policy goes down the tubers.

Dixelius C, Fagerström T, Sundström JF.

Nat Biotechnol. 2012 Jun 7;30(6):492-3. doi: 10.1038/nbt.2255. No abstract available.

PMID:
22678381
19.

Stop worrying; start growing. Risk research on GM crops is a dead parrot: it is time to start reaping the benefits of GM.

Fagerström T, Dixelius C, Magnusson U, Sundström JF.

EMBO Rep. 2012 Jun 1;13(6):493-7. doi: 10.1038/embor.2012.59. No abstract available.

20.

The Arabidopsis thaliana transcriptional activator STYLISH1 regulates genes affecting stamen development, cell expansion and timing of flowering.

Ståldal V, Cierlik I, Chen S, Landberg K, Baylis T, Myrenås M, Sundström JF, Eklund DM, Ljung K, Sundberg E.

Plant Mol Biol. 2012 Apr;78(6):545-59. doi: 10.1007/s11103-012-9888-z. Epub 2012 Feb 9.

PMID:
22318676
21.

Evolution of the PEBP gene family in plants: functional diversification in seed plant evolution.

Karlgren A, Gyllenstrand N, Källman T, Sundström JF, Moore D, Lascoux M, Lagercrantz U.

Plant Physiol. 2011 Aug;156(4):1967-77. doi: 10.1104/pp.111.176206. Epub 2011 Jun 3.

22.

Embryogenic potential and expression of embryogenesis-related genes in conifers are affected by treatment with a histone deacetylase inhibitor.

Uddenberg D, Valladares S, Abrahamsson M, Sundström JF, Sundås-Larsson A, von Arnold S.

Planta. 2011 Sep;234(3):527-39. doi: 10.1007/s00425-011-1418-8. Epub 2011 May 4.

23.

The Arabidopsis thaliana STYLISH1 protein acts as a transcriptional activator regulating auxin biosynthesis.

Eklund DM, Ståldal V, Valsecchi I, Cierlik I, Eriksson C, Hiratsu K, Ohme-Takagi M, Sundström JF, Thelander M, Ezcurra I, Sundberg E.

Plant Cell. 2010 Feb;22(2):349-63. doi: 10.1105/tpc.108.064816. Epub 2010 Feb 12.

24.

Tudor staphylococcal nuclease is an evolutionarily conserved component of the programmed cell death degradome.

Sundström JF, Vaculova A, Smertenko AP, Savenkov EI, Golovko A, Minina E, Tiwari BS, Rodriguez-Nieto S, Zamyatnin AA Jr, Välineva T, Saarikettu J, Frilander MJ, Suarez MF, Zavialov A, Ståhl U, Hussey PJ, Silvennoinen O, Sundberg E, Zhivotovsky B, Bozhkov PV.

Nat Cell Biol. 2009 Nov;11(11):1347-54. doi: 10.1038/ncb1979. Epub 2009 Oct 11.

PMID:
19820703
25.

The RY/Sph element mediates transcriptional repression of maturation genes from late maturation to early seedling growth.

Guerriero G, Martin N, Golovko A, Sundström JF, Rask L, Ezcurra I.

New Phytol. 2009 Nov;184(3):552-65. doi: 10.1111/j.1469-8137.2009.02977.x. Epub 2009 Jul 29.

26.

Non-radioactive in situ hybridization protocol applicable for Norway spruce and a range of plant species.

Karlgren A, Carlsson J, Gyllenstrand N, Lagercrantz U, Sundström JF.

J Vis Exp. 2009 Apr 17;(26). pii: 1205. doi: 10.3791/1205.

27.

Mitochondrial regulation of flower development.

Carlsson J, Leino M, Sohlberg J, Sundström JF, Glimelius K.

Mitochondrion. 2008 Jan;8(1):74-86. Epub 2007 Dec 3. Review.

PMID:
18054525
28.

Molecular and phylogenetic analyses of the MADS-box gene family in tomato.

Hileman LC, Sundstrom JF, Litt A, Chen M, Shumba T, Irish VF.

Mol Biol Evol. 2006 Nov;23(11):2245-58. Epub 2006 Aug 22.

PMID:
16926244
29.

Direct regulation of the floral homeotic APETALA1 gene by APETALA3 and PISTILLATA in Arabidopsis.

Sundström JF, Nakayama N, Glimelius K, Irish VF.

Plant J. 2006 May;46(4):593-600.

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