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Items: 1 to 50 of 171

1.

Soil domestication by rice cultivation results in plant-soil feedback through shifts in soil microbiota.

Edwards J, Santos-Medellín C, Nguyen B, Kilmer J, Liechty Z, Veliz E, Ni J, Phillips G, Sundaresan V.

Genome Biol. 2019 Oct 24;20(1):221. doi: 10.1186/s13059-019-1825-x.

2.

Automated lesion segmentation with BIANCA: Impact of population-level features, classification algorithm and locally adaptive thresholding.

Sundaresan V, Zamboni G, Le Heron C, Rothwell PM, Husain M, Battaglini M, De Stefano N, Jenkinson M, Griffanti L.

Neuroimage. 2019 Nov 15;202:116056. doi: 10.1016/j.neuroimage.2019.116056. Epub 2019 Jul 31.

3.

Mechanisms by which sialylated milk oligosaccharides impact bone biology in a gnotobiotic mouse model of infant undernutrition.

Cowardin CA, Ahern PP, Kung VL, Hibberd MC, Cheng J, Guruge JL, Sundaresan V, Head RD, Barile D, Mills DA, Barratt MJ, Huq S, Ahmed T, Gordon JI.

Proc Natl Acad Sci U S A. 2019 Jun 11;116(24):11988-11996. doi: 10.1073/pnas.1821770116. Epub 2019 May 28.

4.

[Screening and identification of CKI1 upstream transcription regulators in Arabidopsis].

Liu ZN, Yuan L, Sundaresan V, Yu XL.

Yi Chuan. 2019 May 20;41(5):430-438. doi: 10.16288/j.yczz.18-314. Chinese.

PMID:
31106779
5.

Amruthapala (Decalepis arayalpathra (J. Joseph and V. Chandras.) Venter): A Comprehensive Review on Diversity, Therapeutic Uses, and Valorization of Bioactive Constituents.

Mishra S, Srivastava N, Sundaresan V, Shanker K.

Curr Pharm Biotechnol. 2019;20(5):376-389. doi: 10.2174/1389201020666190318115504. Review.

PMID:
30887919
6.

Plasmon Heating Promotes Ligand Reorganization on Single Gold Nanorods.

Cheng X, Anthony TP, West CA, Hu Z, Sundaresan V, McLeod AJ, Masiello DJ, Willets KA.

J Phys Chem Lett. 2019 Mar 21;10(6):1394-1401. doi: 10.1021/acs.jpclett.9b00079. Epub 2019 Mar 12.

PMID:
30840464
7.

Surface-tracked scanning ion conductance microscopy: A novel imaging technique for measuring topography-correlated transmembrane ion transport through porous substrates.

Venkatesh V, Heinemann C, Sundaresan VB.

Micron. 2019 May;120:57-65. doi: 10.1016/j.micron.2019.01.015. Epub 2019 Feb 8.

PMID:
30776683
8.

Step-by-step protocols for rice gamete isolation.

Li C, Xu H, Russell SD, Sundaresan V.

Plant Reprod. 2019 Mar;32(1):5-13. doi: 10.1007/s00497-019-00363-y. Epub 2019 Feb 12.

PMID:
30756188
9.

A male-expressed rice embryogenic trigger redirected for asexual propagation through seeds.

Khanday I, Skinner D, Yang B, Mercier R, Sundaresan V.

Nature. 2019 Jan;565(7737):91-95. doi: 10.1038/s41586-018-0785-8. Epub 2018 Dec 12.

PMID:
30542157
10.

Modelling the distribution of white matter hyperintensities due to ageing on MRI images using Bayesian inference.

Sundaresan V, Griffanti L, Kindalova P, Alfaro-Almagro F, Zamboni G, Rothwell PM, Nichols TE, Jenkinson M.

Neuroimage. 2019 Jan 15;185:434-445. doi: 10.1016/j.neuroimage.2018.10.042. Epub 2018 Oct 22.

11.

Arabidopsis CKI1 mediated two-component signaling in the specification of female gametophyte.

Liu Z, Yuan L, Sundaresan V, Yu X.

Plant Signal Behav. 2018;13(10):e1469360. doi: 10.1080/15592324.2018.1469360. Epub 2018 Aug 27.

12.

Recent advances in understanding female gametophyte development.

Skinner DJ, Sundaresan V.

F1000Res. 2018 Jun 20;7. pii: F1000 Faculty Rev-804. doi: 10.12688/f1000research.14508.1. eCollection 2018. Review.

13.

Reproductive Long Intergenic Noncoding RNAs Exhibit Male Gamete Specificity and Polycomb Repressive Complex 2-Mediated Repression.

Johnson C, Conrad LJ, Patel R, Anderson S, Li C, Pereira A, Sundaresan V.

Plant Physiol. 2018 Jul;177(3):1198-1217. doi: 10.1104/pp.17.01269. Epub 2018 May 29.

14.

The gymnosperm ortholog of the angiosperm central cell-specification gene CKI1 provides an essential clue to endosperm origin.

Yuan L, Liu Z, Song X, Jernstedt J, Sundaresan V.

New Phytol. 2018 Jun;218(4):1685-1696. doi: 10.1111/nph.15115. Epub 2018 Mar 30.

15.

Candidate DNA Barcode Tags Combined With High Resolution Melting (Bar-HRM) Curve Analysis for Authentication of Senna alexandrina Mill. With Validation in Crude Drugs.

Mishra P, Shukla AK, Sundaresan V.

Front Plant Sci. 2018 Mar 13;9:283. doi: 10.3389/fpls.2018.00283. eCollection 2018.

16.

Compositional shifts in root-associated bacterial and archaeal microbiota track the plant life cycle in field-grown rice.

Edwards JA, Santos-Medellín CM, Liechty ZS, Nguyen B, Lurie E, Eason S, Phillips G, Sundaresan V.

PLoS Biol. 2018 Feb 23;16(2):e2003862. doi: 10.1371/journal.pbio.2003862. eCollection 2018 Feb.

17.

ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.

Liu Z, Miao L, Huo R, Song X, Johnson C, Kong L, Sundaresan V, Yu X.

Plant Cell Physiol. 2018 Jan 1;59(1):179-189. doi: 10.1093/pcp/pcx174.

PMID:
29145642
18.

The Zygotic Transition Is Initiated in Unicellular Plant Zygotes with Asymmetric Activation of Parental Genomes.

Anderson SN, Johnson CS, Chesnut J, Jones DS, Khanday I, Woodhouse M, Li C, Conrad LJ, Russell SD, Sundaresan V.

Dev Cell. 2017 Nov 6;43(3):349-358.e4. doi: 10.1016/j.devcel.2017.10.005.

19.

Significantly mutated genes and regulatory pathways in SCLC-a meta-analysis.

Sundaresan V, Lin VT, Liang F, Kaye FJ, Kawabata-Iwakawa R, Shiraishi K, Kohno T, Yokota J, Zhou L.

Cancer Genet. 2017 Oct;216-217:20-28. doi: 10.1016/j.cancergen.2017.05.003. Epub 2017 Jun 7.

20.

Three-Dimensional Super-resolution Imaging of Single Nanoparticles Delivered by Pipettes.

Yu Y, Sundaresan V, Bandyopadhyay S, Zhang Y, Edwards MA, McKelvey K, White HS, Willets KA.

ACS Nano. 2017 Oct 24;11(10):10529-10538. doi: 10.1021/acsnano.7b05902. Epub 2017 Oct 5.

PMID:
28968077
21.

Isolation of Rice Sperm Cells for Transcriptional Profiling.

Russell SD, Jones DS, Anderson S, Wang X, Sundaresan V, Gou X.

Methods Mol Biol. 2017;1669:211-219. doi: 10.1007/978-1-4939-7286-9_17.

PMID:
28936661
22.

Evaluation of single and multilocus DNA barcodes towards species delineation in complex tree genus Terminalia.

Mishra P, Kumar A, Nagireddy A, Shukla AK, Sundaresan V.

PLoS One. 2017 Aug 22;12(8):e0182836. doi: 10.1371/journal.pone.0182836. eCollection 2017.

23.

Topical tissue nano-transfection mediates non-viral stroma reprogramming and rescue.

Gallego-Perez D, Pal D, Ghatak S, Malkoc V, Higuita-Castro N, Gnyawali S, Chang L, Liao WC, Shi J, Sinha M, Singh K, Steen E, Sunyecz A, Stewart R, Moore J, Ziebro T, Northcutt RG, Homsy M, Bertani P, Lu W, Roy S, Khanna S, Rink C, Sundaresan VB, Otero JJ, Lee LJ, Sen CK.

Nat Nanotechnol. 2017 Oct;12(10):974-979. doi: 10.1038/nnano.2017.134. Epub 2017 Aug 7.

24.

ISSR-Derived Species-Specific SCAR Marker for Rapid and Accurate Authentication of Ocimum tenuiflorum L.

Kumar A, Rodrigues V, Mishra P, Baskaran K, Shukla AK, Shasany AK, Sundaresan V.

Planta Med. 2018 Jan;84(2):117-122. doi: 10.1055/s-0043-116853. Epub 2017 Jul 24.

PMID:
28738440
25.

Drought Stress Results in a Compartment-Specific Restructuring of the Rice Root-Associated Microbiomes.

Santos-Medellín C, Edwards J, Liechty Z, Nguyen B, Sundaresan V.

MBio. 2017 Jul 18;8(4). pii: e00764-17. doi: 10.1128/mBio.00764-17.

26.

AHP2, AHP3, and AHP5 act downstream of CKI1 in Arabidopsis female gametophyte development.

Liu Z, Yuan L, Song X, Yu X, Sundaresan V.

J Exp Bot. 2017 Jun 15;68(13):3365-3373. doi: 10.1093/jxb/erx181.

27.

Super-Resolution Imaging and Plasmonics.

Willets KA, Wilson AJ, Sundaresan V, Joshi PB.

Chem Rev. 2017 Jun 14;117(11):7538-7582. doi: 10.1021/acs.chemrev.6b00547. Epub 2017 Jan 13.

PMID:
28084729
28.

Feasibility of nuclear ribosomal region ITS1 over ITS2 in barcoding taxonomically challenging genera of subtribe Cassiinae (Fabaceae).

Mishra P, Kumar A, Rodrigues V, Shukla AK, Sundaresan V.

PeerJ. 2016 Dec 15;4:e2638. eCollection 2016.

29.

Visualizing and Calculating Tip-Substrate Distance in Nanoscale Scanning Electrochemical Microscopy Using 3-Dimensional Super-Resolution Optical Imaging.

Sundaresan V, Marchuk K, Yu Y, Titus EJ, Wilson AJ, Armstrong CM, Zhang B, Willets KA.

Anal Chem. 2017 Jan 3;89(1):922-928. doi: 10.1021/acs.analchem.6b04073. Epub 2016 Dec 19.

PMID:
27991761
30.

Higher efficiency of ISSR markers over plastid psbA-trnH region in resolving taxonomical status of genus Ocimum L.

Kumar A, Mishra P, Baskaran K, Shukla AK, Shasany AK, Sundaresan V.

Ecol Evol. 2016 Oct 5;6(21):7671-7682. doi: 10.1002/ece3.2483. eCollection 2016 Nov.

31.

Integrating Domain Specific Knowledge and Network Analysis to Predict Drug Sensitivity of Cancer Cell Lines.

Kim S, Sundaresan V, Zhou L, Kahveci T.

PLoS One. 2016 Sep 8;11(9):e0162173. doi: 10.1371/journal.pone.0162173. eCollection 2016.

32.

BIANCA (Brain Intensity AbNormality Classification Algorithm): A new tool for automated segmentation of white matter hyperintensities.

Griffanti L, Zamboni G, Khan A, Li L, Bonifacio G, Sundaresan V, Schulz UG, Kuker W, Battaglini M, Rothwell PM, Jenkinson M.

Neuroimage. 2016 Nov 1;141:191-205. doi: 10.1016/j.neuroimage.2016.07.018. Epub 2016 Jul 9.

33.

Dynamic mechanoelectrochemistry of polypyrrole membranes via shear-force tracking.

Northcutt RG, Heinemann C, Sundaresan VB.

Phys Chem Chem Phys. 2016 Jul 14;18(26):17366-72. doi: 10.1039/c6cp03071h. Epub 2016 Jun 6.

PMID:
27263628
34.

The CKI1 Histidine Kinase Specifies the Female Gametic Precursor of the Endosperm.

Yuan L, Liu Z, Song X, Johnson C, Yu X, Sundaresan V.

Dev Cell. 2016 Apr 4;37(1):34-46. doi: 10.1016/j.devcel.2016.03.009.

35.

Computer-assisted grading of diabetic macular edema on retinal color fundus images.

Sundaresan V, Ram K, Joshi N, Sivaprakasam M, Gandhi R.

Conf Proc IEEE Eng Med Biol Soc. 2015 Aug;2015:4330-3. doi: 10.1109/EMBC.2015.7319353.

PMID:
26737253
36.

Mechanoelectrochemistry of PPy(DBS) from correlated characterization of electrochemical response and extensional strain.

Northcutt RG, Sundaresan VB.

Phys Chem Chem Phys. 2015 Dec 28;17(48):32268-75. doi: 10.1039/c5cp04945h.

PMID:
26583690
37.

A multicentre validation of Metasin: a molecular assay for the intraoperative assessment of sentinel lymph nodes from breast cancer patients.

Sai-Giridhar P, Al-Ramadhani S, George D, Gopinath P, Andrews W, Jader S, Brown S, Findlay A, Arkoumani E, Al-Sam S, McKenzie JG, Bradpiece H, Jenkins S, Aylwin A, Holt S, Sharaiha Y, Yiangou C, Agrawal A, McDowell A, Gabriel FG, Jeffrey M, Agrawal N, Cree IA, Mansel RE, Keshtgar M, McDermott N, El Sheikh S, Wellsted D, Collard J, Chaplin H, Landt O, Bustin S, Sundaresan M, Sundaresan V.

Histopathology. 2016 May;68(6):875-87. doi: 10.1111/his.12863. Epub 2016 Jan 4.

PMID:
26383172
38.

Frequency of transmitted drug resistance mutations among treatment-naïve HIV-1-infected individuals at a tertiary care centre in South India.

Kannangai R, David S, Sundaresan VC, Sachithanandham J, Mani M, Abraham OC, Pulimood SA, Rupali P, Sridharan G.

Mol Diagn Ther. 2015 Oct;19(5):273-5. doi: 10.1007/s40291-015-0160-5.

PMID:
26296335
39.

DNA barcoding: an efficient tool to overcome authentication challenges in the herbal market.

Mishra P, Kumar A, Nagireddy A, Mani DN, Shukla AK, Tiwari R, Sundaresan V.

Plant Biotechnol J. 2016 Jan;14(1):8-21. doi: 10.1111/pbi.12419. Epub 2015 Jun 16. Review.

40.

Auxin Import and Local Auxin Biosynthesis Are Required for Mitotic Divisions, Cell Expansion and Cell Specification during Female Gametophyte Development in Arabidopsis thaliana.

Panoli A, Martin MV, Alandete-Saez M, Simon M, Neff C, Swarup R, Bellido A, Yuan L, Pagnussat GC, Sundaresan V.

PLoS One. 2015 May 13;10(5):e0126164. doi: 10.1371/journal.pone.0126164. eCollection 2015.

41.

Population Dynamics and Conservation Implications of Decalepis arayalpathra (J. Joseph and V. Chandras.) Venter., a Steno Endemic Species of Western Ghats, India.

Mishra P, Kumar LD, Kumar A, Gokul S, Ravikumar K, Shukla AK, Sundaresan V.

Appl Biochem Biotechnol. 2015 Jul;176(5):1413-30. doi: 10.1007/s12010-015-1654-7. Epub 2015 May 13.

PMID:
25969156
42.

Structure, variation, and assembly of the root-associated microbiomes of rice.

Edwards J, Johnson C, Santos-Medellín C, Lurie E, Podishetty NK, Bhatnagar S, Eisen JA, Sundaresan V.

Proc Natl Acad Sci U S A. 2015 Feb 24;112(8):E911-20. doi: 10.1073/pnas.1414592112. Epub 2015 Jan 20.

43.

Spore formation in plants: sporocyteless and more.

Yuan L, Sundaresan V.

Cell Res. 2015 Jan;25(1):7-8. doi: 10.1038/cr.2014.164. Epub 2014 Dec 16.

44.

Antipodal cells persist through fertilization in the female gametophyte of Arabidopsis.

Song X, Yuan L, Sundaresan V.

Plant Reprod. 2014 Dec;27(4):197-203. doi: 10.1007/s00497-014-0251-1. Epub 2014 Nov 12.

PMID:
25389024
45.

A haploid genetics toolbox for Arabidopsis thaliana.

Ravi M, Marimuthu MP, Tan EH, Maheshwari S, Henry IM, Marin-Rodriguez B, Urtecho G, Tan J, Thornhill K, Zhu F, Panoli A, Sundaresan V, Britt AB, Comai L, Chan SW.

Nat Commun. 2014 Oct 31;5:5334. doi: 10.1038/ncomms6334.

PMID:
25358957
46.

The polycomb group gene EMF2B is essential for maintenance of floral meristem determinacy in rice.

Conrad LJ, Khanday I, Johnson C, Guiderdoni E, An G, Vijayraghavan U, Sundaresan V.

Plant J. 2014 Dec;80(5):883-94. doi: 10.1111/tpj.12688.

47.

Natural rice rhizospheric microbes suppress rice blast infections.

Spence C, Alff E, Johnson C, Ramos C, Donofrio N, Sundaresan V, Bais H.

BMC Plant Biol. 2014 May 13;14:130. doi: 10.1186/1471-2229-14-130.

48.

Chemical composition of root aroma of Decalepis arayalpathra (J. Joseph and V. Chandras.) Venter, an endemic and endangered ethnomedicinal plant from Western Ghats, India.

Verma RS, Mishra P, Kumar A, Chauhan A, Padalia RC, Sundaresan V.

Nat Prod Res. 2014;28(15):1202-5. doi: 10.1080/14786419.2014.918127. Epub 2014 May 20.

PMID:
24841455
49.

Dual-responsive polymer-coated iron oxide nanoparticles for drug delivery and imaging applications.

Sundaresan V, Menon JU, Rahimi M, Nguyen KT, Wadajkar AS.

Int J Pharm. 2014 May 15;466(1-2):1-7. doi: 10.1016/j.ijpharm.2014.03.016. Epub 2014 Mar 5.

50.

Transcriptomes of isolated Oryza sativa gametes characterized by deep sequencing: evidence for distinct sex-dependent chromatin and epigenetic states before fertilization.

Anderson SN, Johnson CS, Jones DS, Conrad LJ, Gou X, Russell SD, Sundaresan V.

Plant J. 2013 Dec;76(5):729-41. doi: 10.1111/tpj.12336. Epub 2013 Nov 11.

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