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Items: 19

1.

Systematic assessment of commercially available low-input miRNA library preparation kits.

Heinicke F, Zhong X, Zucknick M, Breidenbach J, Sundaram AYM, T Flåm S, Leithaug M, Dalland M, Farmer A, Henderson JM, Hussong MA, Moll P, Nguyen L, McNulty A, Shaffer JM, Shore S, Yip HK, Vitkovska J, Rayner S, Lie BA, Gilfillan GD.

RNA Biol. 2019 Sep 27:1-12. doi: 10.1080/15476286.2019.1667741. [Epub ahead of print]

PMID:
31559901
2.

Exposure to broad-spectrum visible light causes major transcriptomic changes in the L. monocytogenes EGDe strain.

Sæbø Pettersen K, Sundaram AYM, Skjerdal T, Wasteson Y, Kijewski A, Lindbäck T, Aspholm M.

Appl Environ Microbiol. 2019 Sep 6. pii: AEM.01462-19. doi: 10.1128/AEM.01462-19. [Epub ahead of print]

PMID:
31492665
3.

Effects of long-term feeding of rapeseed meal on skeletal muscle transcriptome, production efficiency and meat quality traits in Norwegian Landrace growing-finishing pigs.

Skugor A, Kjos NP, Sundaram AYM, Mydland LT, Ånestad R, Tauson AH, Øverland M.

PLoS One. 2019 Aug 7;14(8):e0220441. doi: 10.1371/journal.pone.0220441. eCollection 2019.

4.

Transcriptomes of antigen presenting cells in human thymus.

Gabrielsen ISM, Helgeland H, Akselsen H, D Aass HC, Sundaram AYM, Snowhite IV, Pugliese A, Flåm ST, Lie BA.

PLoS One. 2019 Jul 1;14(7):e0218858. doi: 10.1371/journal.pone.0218858. eCollection 2019.

5.

Single-Cell RNA Sequencing of In Vitro Expanded Chondrocytes: MSC-Like Cells With No Evidence of Distinct Subsets.

Karlsen TA, Sundaram AYM, Brinchmann JE.

Cartilage. 2019 May 9:1947603519847746. doi: 10.1177/1947603519847746. [Epub ahead of print]

PMID:
31072202
6.

Postovulatory maternal transcriptome in Atlantic salmon and its relation to developmental potential of embryos.

Bizuayehu TT, Mommens M, Sundaram AYM, Dhanasiri AKS, Babiak I.

BMC Genomics. 2019 Apr 24;20(1):315. doi: 10.1186/s12864-019-5667-4.

7.

Towards population genomics in non-model species with large genomes: a case study of the marine zooplankton Calanus finmarchicus.

Choquet M, Smolina I, Dhanasiri AKS, Blanco-Bercial L, Kopp M, Jueterbock A, Sundaram AYM, Hoarau G.

R Soc Open Sci. 2019 Feb 13;6(2):180608. doi: 10.1098/rsos.180608. eCollection 2019 Feb.

8.

Monocytes accumulate in the airways of children with fatal asthma.

Eguíluz-Gracia I, Malmstrom K, Dheyauldeen SA, Lohi J, Sajantila A, Aaløkken R, Sundaram AYM, Gilfillan GD, Makela M, Baekkevold ES, Jahnsen FL.

Clin Exp Allergy. 2018 Dec;48(12):1631-1639. doi: 10.1111/cea.13265. Epub 2018 Oct 16.

PMID:
30184280
9.

Deltamethrin resistance in the salmon louse, Lepeophtheirus salmonis (Krøyer): Maternal inheritance and reduced apoptosis.

Bakke MJ, Agusti C, Bruusgaard JC, Sundaram AYM, Horsberg TE.

Sci Rep. 2018 May 31;8(1):8450. doi: 10.1038/s41598-018-26420-6.

10.

Gene expression profiling of fast- and slow-growing non-functioning gonadotroph pituitary adenomas.

Falch CM, Sundaram AYM, Øystese KA, Normann KR, Lekva T, Silamikelis I, Eieland AK, Andersen M, Bollerslev J, Olarescu NC.

Eur J Endocrinol. 2018 Mar;178(3):295-307. doi: 10.1530/EJE-17-0702. Epub 2017 Dec 19.

PMID:
29259037
11.

Full genome survey and dynamics of gene expression in the greater amberjack Seriola dumerili.

Sarropoulou E, Sundaram AYM, Kaitetzidou E, Kotoulas G, Gilfillan GD, Papandroulakis N, Mylonas CC, Magoulas A.

Gigascience. 2017 Dec 1;6(12):1-13. doi: 10.1093/gigascience/gix108.

12.

A novel ultra high-throughput 16S rRNA gene amplicon sequencing library preparation method for the Illumina HiSeq platform.

de Muinck EJ, Trosvik P, Gilfillan GD, Hov JR, Sundaram AYM.

Microbiome. 2017 Jul 6;5(1):68. doi: 10.1186/s40168-017-0279-1.

13.

A c-Myb mutant causes deregulated differentiation due to impaired histone binding and abrogated pioneer factor function.

Fuglerud BM, Lemma RB, Wanichawan P, Sundaram AYM, Eskeland R, Gabrielsen OS.

Nucleic Acids Res. 2017 Jul 27;45(13):7681-7696. doi: 10.1093/nar/gkx364.

14.

A comparative study of ChIP-seq sequencing library preparation methods.

Sundaram AY, Hughes T, Biondi S, Bolduc N, Bowman SK, Camilli A, Chew YC, Couture C, Farmer A, Jerome JP, Lazinski DW, McUsic A, Peng X, Shazand K, Xu F, Lyle R, Gilfillan GD.

BMC Genomics. 2016 Oct 21;17(1):816.

15.

Transcriptomic changes in relation to early-life events in the gilthead sea bream (Sparus aurata).

Sarropoulou E, Tsalafouta A, Sundaram AY, Gilfillan GD, Kotoulas G, Papandroulakis N, Pavlidis M.

BMC Genomics. 2016 Jul 26;17:506. doi: 10.1186/s12864-016-2874-0.

16.

Thermal plasticity of the miRNA transcriptome during Senegalese sole development.

Campos C, Sundaram AY, Valente LM, Conceição LE, Engrola S, Fernandes JM.

BMC Genomics. 2014 Jun 25;15:525. doi: 10.1186/1471-2164-15-525.

17.

Diversification of the expanded teleost-specific toll-like receptor family in Atlantic cod, Gadus morhua.

Sundaram AY, Kiron V, Dopazo J, Fernandes JM.

BMC Evol Biol. 2012 Dec 29;12:256. doi: 10.1186/1471-2148-12-256.

18.

Positive selection pressure within teleost Toll-like receptors tlr21 and tlr22 subfamilies and their response to temperature stress and microbial components in zebrafish.

Sundaram AY, Consuegra S, Kiron V, Fernandes JM.

Mol Biol Rep. 2012 Sep;39(9):8965-75. doi: 10.1007/s11033-012-1765-y. Epub 2012 Jun 24.

PMID:
22729906
19.

LSH and G9a/GLP complex are required for developmentally programmed DNA methylation.

Myant K, Termanis A, Sundaram AY, Boe T, Li C, Merusi C, Burrage J, de Las Heras JI, Stancheva I.

Genome Res. 2011 Jan;21(1):83-94. doi: 10.1101/gr.108498.110. Epub 2010 Dec 13.

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