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Items: 1 to 50 of 122

1.

Assigning NMR spectra of RNA, peptides and small organic molecules using molecular network visualization software.

Marchant J, Summers MF, Johnson BA.

J Biomol NMR. 2019 Jul 19. doi: 10.1007/s10858-019-00271-3. [Epub ahead of print]

PMID:
31325088
2.

Synthesis of distal and proximal fleximer base analogues and evaluation in the nucleocapsid protein of HIV-1.

Ku T, Lopresti N, Shirley M, Mori M, Marchant J, Heng X, Botta M, Summers MF, Seley-Radtke KL.

Bioorg Med Chem. 2019 Jul 1;27(13):2883-2892. doi: 10.1016/j.bmc.2019.05.019. Epub 2019 May 15.

PMID:
31126822
3.

Replicating Meyerhoff for inclusive excellence in STEM.

Sto Domingo MR, Sharp S, Freeman A, Freeman T Jr, Harmon K, Wiggs M, Sathy V, Panter AT, Oseguera L, Sun S, Williams ME, Templeton J, Folt CL, Barron EJ, Hrabowski FA 3rd, Maton KI, Crimmins M, Fisher CR, Summers MF.

Science. 2019 Apr 26;364(6438):335-337. doi: 10.1126/science.aar5540. No abstract available.

PMID:
31023915
4.

Long-Range RNA Structural Information via a Paramagnetically Tagged Reporter Protein.

Strickland M, Catazaro J, Rajasekaran R, Strub MP, O'Hern C, Bermejo GA, Summers MF, Marchant J, Tjandra N.

J Am Chem Soc. 2019 Jan 30;141(4):1430-1434. doi: 10.1021/jacs.8b11384. Epub 2019 Jan 22.

PMID:
30652860
5.

Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts.

Rife Magalis B, Kosakovsky Pond SL, Summers MF, Salemi M.

Virus Evol. 2018 Jun 21;4(1):vey018. doi: 10.1093/ve/vey018. eCollection 2018 Jan.

6.

Influence of gag and RRE Sequences on HIV-1 RNA Packaging Signal Structure and Function.

Kharytonchyk S, Brown JD, Stilger K, Yasin S, Iyer AS, Collins J, Summers MF, Telesnitsky A.

J Mol Biol. 2018 Jul 6;430(14):2066-2079. doi: 10.1016/j.jmb.2018.05.029. Epub 2018 May 19.

7.

Accurate Measurement of Residual Dipolar Couplings in Large RNAs by Variable Flip Angle NMR.

Marchant J, Bax A, Summers MF.

J Am Chem Soc. 2018 Jun 6;140(22):6978-6983. doi: 10.1021/jacs.8b03298. Epub 2018 May 25.

8.

HIV-1 Matrix Protein Interactions with tRNA: Implications for Membrane Targeting.

Gaines CR, Tkacik E, Rivera-Oven A, Somani P, Achimovich A, Alabi T, Zhu A, Getachew N, Yang AL, McDonough M, Hawkins T, Spadaro Z, Summers MF.

J Mol Biol. 2018 Jul 6;430(14):2113-2127. doi: 10.1016/j.jmb.2018.04.042. Epub 2018 May 9.

9.

Structure of the 30 kDa HIV-1 RNA Dimerization Signal by a Hybrid Cryo-EM, NMR, and Molecular Dynamics Approach.

Zhang K, Keane SC, Su Z, Irobalieva RN, Chen M, Van V, Sciandra CA, Marchant J, Heng X, Schmid MF, Case DA, Ludtke SJ, Summers MF, Chiu W.

Structure. 2018 Mar 6;26(3):490-498.e3. doi: 10.1016/j.str.2018.01.001. Epub 2018 Feb 2.

10.

Mechanism of Competitive Inhibition and Destabilization of Acidothermus cellulolyticus Endoglucanase 1 by Ionic Liquids.

Summers SR, Sprenger KG, Pfaendtner J, Marchant J, Summers MF, Kaar JL.

J Phys Chem B. 2017 Dec 7;121(48):10793-10803. doi: 10.1021/acs.jpcb.7b08435. Epub 2017 Nov 21.

PMID:
29120187
11.

NMR Studies of the Structure and Function of the HIV-1 5'-Leader.

Keane SC, Summers MF.

Viruses. 2016 Dec 21;8(12). pii: E338. doi: 10.3390/v8120338. Review.

12.

Transcriptional start site heterogeneity modulates the structure and function of the HIV-1 genome.

Kharytonchyk S, Monti S, Smaldino PJ, Van V, Bolden NC, Brown JD, Russo E, Swanson C, Shuey A, Telesnitsky A, Summers MF.

Proc Natl Acad Sci U S A. 2016 Nov 22;113(47):13378-13383. Epub 2016 Nov 9.

13.

NMR detection of intermolecular interaction sites in the dimeric 5'-leader of the HIV-1 genome.

Keane SC, Van V, Frank HM, Sciandra CA, McCowin S, Santos J, Heng X, Summers MF.

Proc Natl Acad Sci U S A. 2016 Nov 15;113(46):13033-13038. Epub 2016 Oct 10.

14.

Improving Underrepresented Minority Student Persistence in STEM.

Estrada M, Burnett M, Campbell AG, Campbell PB, Denetclaw WF, Gutiérrez CG, Hurtado S, John GH, Matsui J, McGee R, Okpodu CM, Robinson TJ, Summers MF, Werner-Washburne M, Zavala M.

CBE Life Sci Educ. 2016 fall;15(3). pii: es5. doi: 10.1187/cbe.16-01-0038.

15.

Structural and Molecular Determinants of Membrane Binding by the HIV-1 Matrix Protein.

Mercredi PY, Bucca N, Loeliger B, Gaines CR, Mehta M, Bhargava P, Tedbury PR, Charlier L, Floquet N, Muriaux D, Favard C, Sanders CR, Freed EO, Marchant J, Summers MF.

J Mol Biol. 2016 Apr 24;428(8):1637-55. doi: 10.1016/j.jmb.2016.03.005. Epub 2016 Mar 16.

16.

Conserved determinants of lentiviral genome dimerization.

Tran T, Liu Y, Marchant J, Monti S, Seu M, Zaki J, Yang AL, Bohn J, Ramakrishnan V, Singh R, Hernandez M, Vega A, Summers MF.

Retrovirology. 2015 Sep 29;12:83. doi: 10.1186/s12977-015-0209-x.

17.

Prediction of hydrogen and carbon chemical shifts from RNA using database mining and support vector regression.

Brown JD, Summers MF, Johnson BA.

J Biomol NMR. 2015 Sep;63(1):39-52. doi: 10.1007/s10858-015-9961-4. Epub 2015 Jul 4.

18.

RNA structure. Structure of the HIV-1 RNA packaging signal.

Keane SC, Heng X, Lu K, Kharytonchyk S, Ramakrishnan V, Carter G, Barton S, Hosic A, Florwick A, Santos J, Bolden NC, McCowin S, Case DA, Johnson BA, Salemi M, Telesnitsky A, Summers MF.

Science. 2015 May 22;348(6237):917-21. doi: 10.1126/science.aaa9266.

19.

NMR structure of the myristylated feline immunodeficiency virus matrix protein.

Brown LA, Cox C, Baptiste J, Summers H, Button R, Bahlow K, Spurrier V, Kyser J, Luttge BG, Kuo L, Freed EO, Summers MF.

Viruses. 2015 Apr 30;7(5):2210-29. doi: 10.3390/v7052210.

20.

Elucidating the mechanism by which compensatory mutations rescue an HIV-1 matrix mutant defective for gag membrane targeting and envelope glycoprotein incorporation.

Tedbury PR, Mercredi PY, Gaines CR, Summers MF, Freed EO.

J Mol Biol. 2015 Mar 27;427(6 Pt B):1413-1427. doi: 10.1016/j.jmb.2015.01.018. Epub 2015 Feb 7.

21.

Regio-selective chemical-enzymatic synthesis of pyrimidine nucleotides facilitates RNA structure and dynamics studies.

Alvarado LJ, LeBlanc RM, Longhini AP, Keane SC, Jain N, Yildiz ZF, Tolbert BS, D'Souza VM, Summers MF, Kreutz C, Dayie TK.

Chembiochem. 2014 Jul 21;15(11):1573-7. doi: 10.1002/cbic.201402130. Epub 2014 Jun 20.

22.

Dual-acting stapled peptides target both HIV-1 entry and assembly.

Zhang H, Curreli F, Waheed AA, Mercredi PY, Mehta M, Bhargava P, Scacalossi D, Tong X, Lee S, Cooper A, Summers MF, Freed EO, Debnath AK.

Retrovirology. 2013 Nov 15;10:136. doi: 10.1186/1742-4690-10-136.

23.

Reevaluation of the requirement for TIP47 in human immunodeficiency virus type 1 envelope glycoprotein incorporation.

Checkley MA, Luttge BG, Mercredi PY, Kyere SK, Donlan J, Murakami T, Summers MF, Cocklin S, Freed EO.

J Virol. 2013 Mar;87(6):3561-70. doi: 10.1128/JVI.03299-12. Epub 2013 Jan 16.

24.

Database proton NMR chemical shifts for RNA signal assignment and validation.

Barton S, Heng X, Johnson BA, Summers MF.

J Biomol NMR. 2013 Jan;55(1):33-46. doi: 10.1007/s10858-012-9683-9. Epub 2012 Nov 23.

25.

Identification of a high affinity nucleocapsid protein binding element from the bovine leukemia virus genome.

Yildiz FZ, Babalola K, Summers MF.

Virus Res. 2013 Feb;171(2):278-86. doi: 10.1016/j.virusres.2012.07.020. Epub 2012 Jul 27.

26.

The HIV-1 matrix protein does not interact directly with the protein interactive domain of AP-3δ.

Kyere SK, Mercredi PY, Dong X, Spearman P, Summers MF.

Virus Res. 2012 Nov;169(2):411-4. doi: 10.1016/j.virusres.2012.06.007. Epub 2012 Jun 15.

27.

Moloney murine leukemia virus genomic RNA packaged in the absence of a full complement of wild type nucleocapsid protein.

Johnson SF, Garcia EL, Summers MF, Telesnitsky A.

Virology. 2012 Sep 1;430(2):100-9. doi: 10.1016/j.virol.2012.05.003. Epub 2012 May 25.

28.

Identification of a minimal region of the HIV-1 5'-leader required for RNA dimerization, NC binding, and packaging.

Heng X, Kharytonchyk S, Garcia EL, Lu K, Divakaruni SS, LaCotti C, Edme K, Telesnitsky A, Summers MF.

J Mol Biol. 2012 Mar 30;417(3):224-39. doi: 10.1016/j.jmb.2012.01.033. Epub 2012 Jan 27.

29.

NMR detection of structures in the HIV-1 5'-leader RNA that regulate genome packaging.

Lu K, Heng X, Garyu L, Monti S, Garcia EL, Kharytonchyk S, Dorjsuren B, Kulandaivel G, Jones S, Hiremath A, Divakaruni SS, LaCotti C, Barton S, Tummillo D, Hosic A, Edme K, Albrecht S, Telesnitsky A, Summers MF.

Science. 2011 Oct 14;334(6053):242-5. doi: 10.1126/science.1210460.

30.

Training the next generation of protein scientists.

Summers MF.

Protein Sci. 2011 Nov;20(11):1796-801. doi: 10.1002/pro.733. Epub 2011 Oct 5.

31.

Structural determinants and mechanism of HIV-1 genome packaging.

Lu K, Heng X, Summers MF.

J Mol Biol. 2011 Jul 22;410(4):609-33. doi: 10.1016/j.jmb.2011.04.029. Review.

32.

Special issue: Structural and molecular biology of HIV.

Summers MF, Karn J.

J Mol Biol. 2011 Jul 22;410(4):489-90. doi: 10.1016/j.jmb.2011.05.001. No abstract available.

PMID:
21762794
33.

Structure of a conserved retroviral RNA packaging element by NMR spectroscopy and cryo-electron tomography.

Miyazaki Y, Irobalieva RN, Tolbert BS, Smalls-Mantey A, Iyalla K, Loeliger K, D'Souza V, Khant H, Schmid MF, Garcia EL, Telesnitsky A, Chiu W, Summers MF.

J Mol Biol. 2010 Dec 17;404(5):751-72. doi: 10.1016/j.jmb.2010.09.009. Epub 2010 Oct 8.

34.

Solution structure of the heterotrimeric complex between the interaction domains of RFX5 and RFXAP from the RFX gene regulatory complex.

Laird KM, Briggs LL, Boss JM, Summers MF, Garvie CW.

J Mol Biol. 2010 Oct 15;403(1):40-51. doi: 10.1016/j.jmb.2010.08.025. Epub 2010 Aug 21.

35.

Major groove width variations in RNA structures determined by NMR and impact of 13C residual chemical shift anisotropy and 1H-13C residual dipolar coupling on refinement.

Tolbert BS, Miyazaki Y, Barton S, Kinde B, Starck P, Singh R, Bax A, Case DA, Summers MF.

J Biomol NMR. 2010 Jul;47(3):205-19. doi: 10.1007/s10858-010-9424-x. Epub 2010 Jun 15.

36.

Reverse micelle encapsulation of membrane-anchored proteins for solution NMR studies.

Valentine KG, Peterson RW, Saad JS, Summers MF, Xu X, Ames JB, Wand AJ.

Structure. 2010 Jan 13;18(1):9-16. doi: 10.1016/j.str.2009.11.010.

37.

An RNA structural switch regulates diploid genome packaging by Moloney murine leukemia virus.

Miyazaki Y, Garcia EL, King SR, Iyalla K, Loeliger K, Starck P, Syed S, Telesnitsky A, Summers MF.

J Mol Biol. 2010 Feb 12;396(1):141-52. doi: 10.1016/j.jmb.2009.11.033. Epub 2009 Nov 17.

38.

Targeting of murine leukemia virus gag to the plasma membrane is mediated by PI(4,5)P2/PS and a polybasic region in the matrix.

Hamard-Peron E, Juillard F, Saad JS, Roy C, Roingeard P, Summers MF, Darlix JL, Picart C, Muriaux D.

J Virol. 2010 Jan;84(1):503-15. doi: 10.1128/JVI.01134-09.

39.

Isotope labeling strategies for NMR studies of RNA.

Lu K, Miyazaki Y, Summers MF.

J Biomol NMR. 2010 Jan;46(1):113-25. doi: 10.1007/s10858-009-9375-2. Epub 2009 Sep 30. Review.

40.

Potential intra- and intermolecular interactions involving the unique-5' region of the HIV-1 5'-UTR.

Spriggs S, Garyu L, Connor R, Summers MF.

Biochemistry. 2008 Dec 9;47(49):13064-73. doi: 10.1021/bi8014373.

41.

Structure of the myristylated human immunodeficiency virus type 2 matrix protein and the role of phosphatidylinositol-(4,5)-bisphosphate in membrane targeting.

Saad JS, Ablan SD, Ghanam RH, Kim A, Andrews K, Nagashima K, Soheilian F, Freed EO, Summers MF.

J Mol Biol. 2008 Oct 3;382(2):434-47. doi: 10.1016/j.jmb.2008.07.027. Epub 2008 Jul 16.

42.

The p12 domain is unstructured in a murine leukemia virus p12-CA(N) Gag construct.

Kyere SK, Joseph PR, Summers MF.

PLoS One. 2008 Apr 2;3(4):e1902. doi: 10.1371/journal.pone.0001902.

43.

6th international symposium on retroviral nucleocapsid.

Berkhout B, Gorelick R, Summers MF, Mély Y, Darlix JL.

Retrovirology. 2008 Feb 25;5:21. doi: 10.1186/1742-4690-5-21.

44.

Structure of the antiviral assembly inhibitor CAP-1 complex with the HIV-1 CA protein.

Kelly BN, Kyere S, Kinde I, Tang C, Howard BR, Robinson H, Sundquist WI, Summers MF, Hill CP.

J Mol Biol. 2007 Oct 19;373(2):355-66. Epub 2007 Aug 15.

45.

Mutations that mimic phosphorylation of the HIV-1 matrix protein do not perturb the myristyl switch.

Saad JS, Kim A, Ghanam RH, Dalton AK, Vogt VM, Wu Z, Lu W, Summers MF.

Protein Sci. 2007 Aug;16(8):1793-7.

46.

Point mutations in the HIV-1 matrix protein turn off the myristyl switch.

Saad JS, Loeliger E, Luncsford P, Liriano M, Tai J, Kim A, Miller J, Joshi A, Freed EO, Summers MF.

J Mol Biol. 2007 Feb 16;366(2):574-85. Epub 2006 Dec 1.

47.

Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly.

Saad JS, Miller J, Tai J, Kim A, Ghanam RH, Summers MF.

Proc Natl Acad Sci U S A. 2006 Jul 25;103(30):11364-9. Epub 2006 Jul 13.

48.

Diversity. Preparing minority scientists and engineers.

Summers MF, Hrabowski FA 3rd.

Science. 2006 Mar 31;311(5769):1870-1. No abstract available.

PMID:
16574853
49.

How retroviruses select their genomes.

D'Souza V, Summers MF.

Nat Rev Microbiol. 2005 Aug;3(8):643-55. Review.

PMID:
16064056
50.

High affinity nucleocapsid protein binding to the muPsi RNA packaging signal of Rous sarcoma virus.

Zhou J, McAllen JK, Tailor Y, Summers MF.

J Mol Biol. 2005 Jun 24;349(5):976-88.

PMID:
15907938

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