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Close Homolog of L1 Regulates Dendritic Spine Density in the Mouse Cerebral Cortex Through Semaphorin 3B.

Mohan V, Wade SD, Sullivan CS, Kasten MR, Sweetman C, Stewart R, Truong Y, Schachner M, Manis PB, Maness PF.

J Neurosci. 2019 Aug 7;39(32):6233-6250. doi: 10.1523/JNEUROSCI.2984-18.2019. Epub 2019 Jun 10.


The coronavirus macrodomain is required to prevent PARP-mediated inhibition of virus replication and enhancement of IFN expression.

Grunewald ME, Chen Y, Kuny C, Maejima T, Lease R, Ferraris D, Aikawa M, Sullivan CS, Perlman S, Fehr AR.

PLoS Pathog. 2019 May 16;15(5):e1007756. doi: 10.1371/journal.ppat.1007756. eCollection 2019 May.


Identification of virus-encoded microRNAs in divergent Papillomaviruses.

Chirayil R, Kincaid RP, Dahlke C, Kuny CV, Dälken N, Spohn M, Lawson B, Grundhoff A, Sullivan CS.

PLoS Pathog. 2018 Jul 26;14(7):e1007156. doi: 10.1371/journal.ppat.1007156. eCollection 2018 Jul.


RNA triphosphatase DUSP11 enables exonuclease XRN-mediated restriction of hepatitis C virus.

Kincaid RP, Lam VL, Chirayil RP, Randall G, Sullivan CS.

Proc Natl Acad Sci U S A. 2018 Aug 7;115(32):8197-8202. doi: 10.1073/pnas.1802326115. Epub 2018 Jul 23.


The Murine Polyomavirus MicroRNA Locus Is Required To Promote Viruria during the Acute Phase of Infection.

Burke JM, Bass CR, Kincaid RP, Ulug ET, Sullivan CS.

J Virol. 2018 Jul 31;92(16). pii: e02131-17. doi: 10.1128/JVI.02131-17. Print 2018 Aug 15.


Perineuronal Net Protein Neurocan Inhibits NCAM/EphA3 Repellent Signaling in GABAergic Interneurons.

Sullivan CS, Gotthard I, Wyatt EV, Bongu S, Mohan V, Weinberg RJ, Maness PF.

Sci Rep. 2018 Apr 18;8(1):6143. doi: 10.1038/s41598-018-24272-8.


Temporal Regulation of Dendritic Spines Through NrCAM-Semaphorin3F Receptor Signaling in Developing Cortical Pyramidal Neurons.

Mohan V, Sullivan CS, Guo J, Wade SD, Majumder S, Agarwal A, Anton ES, Temple BS, Maness PF.

Cereb Cortex. 2019 Mar 1;29(3):963-977. doi: 10.1093/cercor/bhy004.


Parent-infant room-sharing is complex and important for breastfeeding.

Tully KP, Sullivan CS.

Evid Based Nurs. 2018 Jan;21(1):18. doi: 10.1136/eb-2017-102801. Epub 2017 Dec 6. No abstract available.


MMTV does not encode viral microRNAs but alters the levels of cancer-associated host microRNAs.

Kincaid RP, Panicker NG, Lozano MM, Sullivan CS, Dudley JP, Mustafa F.

Virology. 2018 Jan 1;513:180-187. doi: 10.1016/j.virol.2017.09.030. Epub 2017 Nov 5.


Expression of short hairpin RNAs using the compact architecture of retroviral microRNA genes.

Burke JM, Kincaid RP, Aloisio F, Welch N, Sullivan CS.

Nucleic Acids Res. 2017 Sep 29;45(17):e154. doi: 10.1093/nar/gkx653.


Innovative Prenatal Breastfeeding Education Curriculum: Ready, Set, BABY.

Parry KC, Tully KP, Moss SL, Sullivan CS.

J Nutr Educ Behav. 2017 Jul - Aug;49(7 Suppl 2):S214-S216.e1. doi: 10.1016/j.jneb.2017.05.348. No abstract available.


NCAM Regulates Inhibition and Excitability in Layer 2/3 Pyramidal Cells of Anterior Cingulate Cortex.

Zhang X, Sullivan CS, Kratz MB, Kasten MR, Maness PF, Manis PB.

Front Neural Circuits. 2017 Mar 23;11:19. doi: 10.3389/fncir.2017.00019. eCollection 2017.


DUSP11 - An RNA phosphatase that regulates host and viral non-coding RNAs in mammalian cells.

Burke JM, Sullivan CS.

RNA Biol. 2017 Nov 2;14(11):1457-1465. doi: 10.1080/15476286.2017.1306169. Epub 2017 Apr 17.


Lessons Learned from In Vivo Studies of a Viral Noncoding RNA.

Kincaid RP, Sullivan CS.

mSphere. 2016 Mar 2;1(2). pii: e00026-16. doi: 10.1128/mSphere.00026-16. eCollection 2016 Mar-Apr.


Virus-Host Interactions and the ARTD/PARP Family of Enzymes.

Kuny CV, Sullivan CS.

PLoS Pathog. 2016 Mar 24;12(3):e1005453. doi: 10.1371/journal.ppat.1005453. eCollection 2016 Mar. No abstract available.


Correction for Chen et al., Divergent MicroRNA Targetomes of Closely Related Circulating Strains of a Polyomavirus.

Chen CJ, Cox JE, Kincaid RP, Martinez A, Sullivan CS.

J Virol. 2016 Jan 28;90(4):2157-8. doi: 10.1128/JVI.02954-15. Print 2016 Feb 15. No abstract available.


Identification, validation, and characterization of noncanonical miRNAs.

Burke JM, Kuny CV, Kincaid RP, Sullivan CS.

Methods. 2015 Dec;91:57-68. doi: 10.1016/j.ymeth.2015.07.013. Epub 2015 Jul 22.


Pan-viral-microRNA screening identifies interferon inhibition as a common function of diverse viruses.

Cox JE, McClure LV, Goga A, Sullivan CS.

Proc Natl Acad Sci U S A. 2015 Feb 10;112(6):1856-61. doi: 10.1073/pnas.1417891112. Epub 2015 Jan 26. Retraction in: Proc Natl Acad Sci U S A. 2015 Mar 31;112(13):E1692.


Identification of a polyomavirus microRNA highly expressed in tumors.

Chen CJ, Cox JE, Azarm KD, Wylie KN, Woolard KD, Pesavento PA, Sullivan CS.

Virology. 2015 Feb;476:43-53. doi: 10.1016/j.virol.2014.11.021. Epub 2014 Dec 13. Erratum in: Virology. 2015 Aug;482:269.


Identification of tri-phosphatase activity in the biogenesis of retroviral microRNAs and RNAP III-generated shRNAs.

Burke JM, Bass CR, Kincaid RP, Sullivan CS.

Nucleic Acids Res. 2014 Dec 16;42(22):13949-62. doi: 10.1093/nar/gku1247. Epub 2014 Nov 26.


Balance and Stealth: The Role of Noncoding RNAs in the Regulation of Virus Gene Expression.

Cox JE, Sullivan CS.

Annu Rev Virol. 2014 Nov;1(1):89-109. doi: 10.1146/annurev-virology-031413-085439. Epub 2014 Jun 2.


Naturally arising strains of polyomaviruses with severely attenuated microRNA expression.

Chen CJ, Burke JM, Kincaid RP, Azarm KD, Mireles N, Butel JS, Sullivan CS.

J Virol. 2014 Nov;88(21):12683-93. doi: 10.1128/JVI.01933-14. Epub 2014 Aug 20.


A central role for the primary microRNA stem in guiding the position and efficiency of Drosha processing of a viral pri-miRNA.

Burke JM, Kelenis DP, Kincaid RP, Sullivan CS.

RNA. 2014 Jul;20(7):1068-77. doi: 10.1261/rna.044537.114. Epub 2014 May 22.


The adaptor protein GULP promotes Jedi-1-mediated phagocytosis through a clathrin-dependent mechanism.

Sullivan CS, Scheib JL, Ma Z, Dang RP, Schafer JM, Hickman FE, Brodsky FM, Ravichandran KS, Carter BD.

Mol Biol Cell. 2014 Jun 15;25(12):1925-36. doi: 10.1091/mbc.E13-11-0658. Epub 2014 Apr 17.


A host MicroRNA brokers truce with HSV-1.

Pare JM, Sullivan CS.

Cell Host Microbe. 2014 Apr 9;15(4):395-7. doi: 10.1016/j.chom.2014.03.011.


Noncanonical microRNA (miRNA) biogenesis gives rise to retroviral mimics of lymphoproliferative and immunosuppressive host miRNAs.

Kincaid RP, Chen Y, Cox JE, Rethwilm A, Sullivan CS.

MBio. 2014 Apr 8;5(2):e00074. doi: 10.1128/mBio.00074-14.


Viral microRNA effects on pathogenesis of polyomavirus SV40 infections in syrian golden hamsters.

Zhang S, Sroller V, Zanwar P, Chen CJ, Halvorson SJ, Ajami NJ, Hecksel CW, Swain JL, Wong C, Sullivan CS, Butel JS.

PLoS Pathog. 2014 Feb 6;10(2):e1003912. doi: 10.1371/journal.ppat.1003912. eCollection 2014 Feb.


Distinct antiviral responses in pluripotent versus differentiated cells.

Pare JM, Sullivan CS.

PLoS Pathog. 2014 Feb 6;10(2):e1003865. doi: 10.1371/journal.ppat.1003865. eCollection 2014 Feb. Review. No abstract available.


A human torque teno virus encodes a microRNA that inhibits interferon signaling.

Kincaid RP, Burke JM, Cox JC, de Villiers EM, Sullivan CS.

PLoS Pathog. 2013;9(12):e1003818. doi: 10.1371/journal.ppat.1003818. Epub 2013 Dec 19.


Reciprocal inhibition between intracellular antiviral signaling and the RNAi machinery in mammalian cells.

Seo GJ, Kincaid RP, Phanaksri T, Burke JM, Pare JM, Cox JE, Hsiang TY, Krug RM, Sullivan CS.

Cell Host Microbe. 2013 Oct 16;14(4):435-45. doi: 10.1016/j.chom.2013.09.002. Epub 2013 Sep 26.


Comprehensive mapping and analysis of Kaposi's sarcoma-associated herpesvirus 3' UTRs identify differential posttranscriptional control of gene expression in lytic versus latent infection.

McClure LV, Kincaid RP, Burke JM, Grundhoff A, Sullivan CS.

J Virol. 2013 Dec;87(23):12838-49. doi: 10.1128/JVI.02374-13. Epub 2013 Sep 25.


Divergent MicroRNA targetomes of closely related circulating strains of a polyomavirus.

Chen CJ, Cox JE, Kincaid RP, Martinez A, Sullivan CS.

J Virol. 2013 Oct;87(20):11135-47. doi: 10.1128/JVI.01711-13. Epub 2013 Aug 7. Erratum in: J Virol. 2016 Feb 15;90(4):2157-8.


Virus-encoded microRNAs: an overview and a look to the future.

Kincaid RP, Sullivan CS.

PLoS Pathog. 2012 Dec;8(12):e1003018. doi: 10.1371/journal.ppat.1003018. Epub 2012 Dec 20. Review.


RIDDLE: reflective diffusion and local extension reveal functional associations for unannotated gene sets via proximity in a gene network.

Wang PI, Hwang S, Kincaid RP, Sullivan CS, Lee I, Marcotte EM.

Genome Biol. 2012 Dec 26;13(12):R125. doi: 10.1186/gb-2012-13-12-r125.


Jedi-1 and MEGF10 signal engulfment of apoptotic neurons through the tyrosine kinase Syk.

Scheib JL, Sullivan CS, Carter BD.

J Neurosci. 2012 Sep 19;32(38):13022-31.


RNA virus microRNA that mimics a B-cell oncomiR.

Kincaid RP, Burke JM, Sullivan CS.

Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3077-82. doi: 10.1073/pnas.1116107109. Epub 2012 Jan 30.


Expanding the role of Drosha to the regulation of viral gene expression.

Lin YT, Sullivan CS.

Proc Natl Acad Sci U S A. 2011 Jul 5;108(27):11229-34. doi: 10.1073/pnas.1105799108. Epub 2011 Jun 20.


Resources and practices to help graduate students and postdoctoral fellows write statements of teaching philosophy.

Kearns KD, Sullivan CS.

Adv Physiol Educ. 2011 Jun;35(2):136-45. doi: 10.1152/advan.00123.2010.


Reporter-based assays for analyzing RNA interference in mammalian cells.

McClure LV, Seo GJ, Sullivan CS.

Methods Mol Biol. 2011;725:173-89. doi: 10.1007/978-1-61779-046-1_12.


Detection of viral microRNAs by Northern blot analysis.

McClure LV, Lin YT, Sullivan CS.

Methods Mol Biol. 2011;721:153-71. doi: 10.1007/978-1-61779-037-9_9.


Insights into Polyomaviridae microRNA function derived from study of the bandicoot papillomatosis carcinomatosis viruses.

Chen CJ, Kincaid RP, Seo GJ, Bennett MD, Sullivan CS.

J Virol. 2011 May;85(9):4487-500. doi: 10.1128/JVI.02557-10. Epub 2011 Feb 23.


Virus-encoded microRNAs.

Grundhoff A, Sullivan CS.

Virology. 2011 Mar 15;411(2):325-43. doi: 10.1016/j.virol.2011.01.002. Epub 2011 Jan 31. Review.


miR-380-5p represses p53 to control cellular survival and is associated with poor outcome in MYCN-amplified neuroblastoma.

Swarbrick A, Woods SL, Shaw A, Balakrishnan A, Phua Y, Nguyen A, Chanthery Y, Lim L, Ashton LJ, Judson RL, Huskey N, Blelloch R, Haber M, Norris MD, Lengyel P, Hackett CS, Preiss T, Chetcuti A, Sullivan CS, Marcusson EG, Weiss W, L'Etoile N, Goga A.

Nat Med. 2010 Oct;16(10):1134-40. doi: 10.1038/nm.2227. Epub 2010 Sep 26.


Small RNA profiling reveals antisense transcription throughout the KSHV genome and novel small RNAs.

Lin YT, Kincaid RP, Arasappan D, Dowd SE, Hunicke-Smith SP, Sullivan CS.

RNA. 2010 Aug;16(8):1540-58. doi: 10.1261/rna.1967910. Epub 2010 Jun 21.


Murine Polyomavirus encodes a microRNA that cleaves early RNA transcripts but is not essential for experimental infection.

Sullivan CS, Sung CK, Pack CD, Grundhoff A, Lukacher AE, Benjamin TL, Ganem D.

Virology. 2009 Apr 25;387(1):157-67. doi: 10.1016/j.virol.2009.02.017. Epub 2009 Mar 9.


Tandem array-based expression screens identify host mRNA targets of virus-encoded microRNAs.

Ziegelbauer JM, Sullivan CS, Ganem D.

Nat Genet. 2009 Jan;41(1):130-4. doi: 10.1038/ng.266. Epub 2008 Dec 21.


Merkel cell polyomavirus encodes a microRNA with the ability to autoregulate viral gene expression.

Seo GJ, Chen CJ, Sullivan CS.

Virology. 2009 Jan 20;383(2):183-7. doi: 10.1016/j.virol.2008.11.001. Epub 2008 Nov 30. Erratum in: Virology. 2009 Nov 10;394(1):173.

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