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Items: 26

1.

KnotProt 2.0: a database of proteins with knots and other entangled structures.

Dabrowski-Tumanski P, Rubach P, Goundaroulis D, Dorier J, Sulkowski P, Millett KC, Rawdon EJ, Stasiak A, Sulkowska JI.

Nucleic Acids Res. 2019 Jan 8;47(D1):D367-D375. doi: 10.1093/nar/gky1140.

2.

Genus trace reveals the topological complexity and domain structure of biomolecules.

Zając S, Geary C, Andersen ES, Dabrowski-Tumanski P, Sulkowska JI, Sułkowski P.

Sci Rep. 2018 Dec 3;8(1):17537. doi: 10.1038/s41598-018-35557-3.

3.

Mcp1 Promotes Macrophage-Dependent Cyst Expansion in Autosomal Dominant Polycystic Kidney Disease.

Cassini MF, Kakade VR, Kurtz E, Sulkowski P, Glazer P, Torres R, Somlo S, Cantley LG.

J Am Soc Nephrol. 2018 Oct;29(10):2471-2481. doi: 10.1681/ASN.2018050518. Epub 2018 Sep 12.

PMID:
30209078
4.

Krebs-cycle-deficient hereditary cancer syndromes are defined by defects in homologous-recombination DNA repair.

Sulkowski PL, Sundaram RK, Oeck S, Corso CD, Liu Y, Noorbakhsh S, Niger M, Boeke M, Ueno D, Kalathil AN, Bao X, Li J, Shuch B, Bindra RS, Glazer PM.

Nat Genet. 2018 Aug;50(8):1086-1092. doi: 10.1038/s41588-018-0170-4. Epub 2018 Jul 16.

5.

PTEN Regulates Nonhomologous End Joining By Epigenetic Induction of NHEJ1/XLF.

Sulkowski PL, Scanlon SE, Oeck S, Glazer PM.

Mol Cancer Res. 2018 Aug;16(8):1241-1254. doi: 10.1158/1541-7786.MCR-17-0581. Epub 2018 May 8.

PMID:
29739874
6.

Suppression of homology-dependent DNA double-strand break repair induces PARP inhibitor sensitivity in VHL-deficient human renal cell carcinoma.

Scanlon SE, Hegan DC, Sulkowski PL, Glazer PM.

Oncotarget. 2017 Dec 19;9(4):4647-4660. doi: 10.18632/oncotarget.23470. eCollection 2018 Jan 12.

7.

PyLasso: a PyMOL plugin to identify lassos.

Gierut AM, Niemyska W, Dabrowski-Tumanski P, Sulkowski P, Sulkowska JI.

Bioinformatics. 2017 Dec 1;33(23):3819-3821. doi: 10.1093/bioinformatics/btx493.

PMID:
28961868
8.

Nickel induces transcriptional down-regulation of DNA repair pathways in tumorigenic and non-tumorigenic lung cells.

Scanlon SE, Scanlon CD, Hegan DC, Sulkowski PL, Glazer PM.

Carcinogenesis. 2017 Jun 1;38(6):627-637. doi: 10.1093/carcin/bgx038.

9.

2-Hydroxyglutarate produced by neomorphic IDH mutations suppresses homologous recombination and induces PARP inhibitor sensitivity.

Sulkowski PL, Corso CD, Robinson ND, Scanlon SE, Purshouse KR, Bai H, Liu Y, Sundaram RK, Hegan DC, Fons NR, Breuer GA, Song Y, Mishra-Gorur K, De Feyter HM, de Graaf RA, Surovtseva YV, Kachman M, Halene S, Günel M, Glazer PM, Bindra RS.

Sci Transl Med. 2017 Feb 1;9(375). pii: eaal2463. doi: 10.1126/scitranslmed.aal2463.

10.

Complex lasso: new entangled motifs in proteins.

Niemyska W, Dabrowski-Tumanski P, Kadlof M, Haglund E, Sułkowski P, Sulkowska JI.

Sci Rep. 2016 Nov 22;6:36895. doi: 10.1038/srep36895.

11.

In vivo correction of anaemia in β-thalassemic mice by γPNA-mediated gene editing with nanoparticle delivery.

Bahal R, Ali McNeer N, Quijano E, Liu Y, Sulkowski P, Turchick A, Lu YC, Bhunia DC, Manna A, Greiner DL, Brehm MA, Cheng CJ, López-Giráldez F, Ricciardi A, Beloor J, Krause DS, Kumar P, Gallagher PG, Braddock DT, Mark Saltzman W, Ly DH, Glazer PM.

Nat Commun. 2016 Oct 26;7:13304. doi: 10.1038/ncomms13304.

12.

miR-155 Overexpression Promotes Genomic Instability by Reducing High-fidelity Polymerase Delta Expression and Activating Error-Prone DSB Repair.

Czochor JR, Sulkowski P, Glazer PM.

Mol Cancer Res. 2016 Apr;14(4):363-73. doi: 10.1158/1541-7786.MCR-15-0399. Epub 2016 Feb 5.

13.

KnotProt: a database of proteins with knots and slipknots.

Jamroz M, Niemyska W, Rawdon EJ, Stasiak A, Millett KC, Sułkowski P, Sulkowska JI.

Nucleic Acids Res. 2015 Jan;43(Database issue):D306-14. doi: 10.1093/nar/gku1059. Epub 2014 Oct 31.

14.

Enumeration of RNA complexes via random matrix theory.

Andersen JE, Chekhov LO, Penner RC, Reidys CM, Sułkowski P.

Biochem Soc Trans. 2013 Apr;41(2):652-5. doi: 10.1042/BST20120270. Review.

PMID:
23514171
15.

Untying knots in proteins.

Sułkowska JI, Sułkowski P, Szymczak P, Cieplak M.

J Am Chem Soc. 2010 Oct 13;132(40):13954-6. doi: 10.1021/ja102441z.

PMID:
20857930
16.

Jamming proteins with slipknots and their free energy landscape.

Sułkowska JI, Sułkowski P, Onuchic JN.

Phys Rev Lett. 2009 Dec 31;103(26):268103. Epub 2009 Dec 29.

PMID:
20366349
17.

Dodging the crisis of folding proteins with knots.

Sułkowska JI, Sułkowski P, Onuchic J.

Proc Natl Acad Sci U S A. 2009 Mar 3;106(9):3119-24. doi: 10.1073/pnas.0811147106. Epub 2009 Feb 11.

18.

Stabilizing effect of knots on proteins.

Sułkowska JI, Sulkowski P, Szymczak P, Cieplak M.

Proc Natl Acad Sci U S A. 2008 Dec 16;105(50):19714-9. doi: 10.1073/pnas.0805468105. Epub 2008 Dec 8.

19.

Tightening of knots in proteins.

Sułkowska JI, Sułkowski P, Szymczak P, Cieplak M.

Phys Rev Lett. 2008 Feb 8;100(5):058106. Epub 2008 Feb 8.

PMID:
18352439
20.

Finite-element distributions as an apparatus for detection of the Einstein-Brillouin-Keller quantized energy levels.

Sułkowski P, Sokalski K.

Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Apr;71(4 Pt 2):046206. Epub 2005 Apr 12.

PMID:
15903769
21.

[The role of integrins and tissue matrix in the progression of the neoplastic process].

Flak A, Sułkowski P, Gmiński J.

Pol Tyg Lek. 1992 Jun 15-29;47(24-26):562-4. Review. Polish. No abstract available.

PMID:
1480531
22.

[Infections and atherosclerosis].

Gmiński J, Drózdz M, Sułkowski P.

Pol Tyg Lek. 1991 Sep 9-30;46(37-39):722-4. Review. Polish. No abstract available.

PMID:
1669143
23.

Modulation of elastase-like activity in fibroblasts stimulated with elastin peptides.

Gmiński J, Weglarz L, Drózdz M, Sułkowski P, Goss M.

Biochem Med Metab Biol. 1991 Apr;45(2):254-7.

PMID:
1883631
24.

Blood histamine level in rabbits experimentally immunized with soluble elastin.

Gmiński J, Drózdz M, Sułkowski P.

Exp Pathol. 1991;42(1):33-5.

PMID:
1879511
25.

Anti-elastin antibodies in rabbits fed an atherogenic diet.

Gmiński J, Drózdz M, Sułkowski P.

Biomed Biochim Acta. 1991;50(1):87-92.

PMID:
1859391
26.

Cross immunoreactivity of aortic kappa-2-elastin with some antibacterial antisera.

Gmiński J, Sułkowski P, Drózdz M.

Exp Pathol. 1991;43(3-4):229-32.

PMID:
1797575

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