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How complete are "complete" genome assemblies?-An avian perspective.

Peona V, Weissensteiner MH, Suh A.

Mol Ecol Resour. 2018 Nov;18(6):1188-1195. doi: 10.1111/1755-0998.12933. Epub 2018 Aug 16.


Nanoscratching technique for highly oriented liquid crystal materials.

Suh A, Yoon DK.

Sci Rep. 2018 Jun 21;8(1):9460. doi: 10.1038/s41598-018-27887-z.


Improved Genome Assembly and Annotation for the Rock Pigeon (Columba livia).

Holt C, Campbell M, Keays DA, Edelman N, Kapusta A, Maclary E, T Domyan E, Suh A, Warren WC, Yandell M, Gilbert MTP, Shapiro MD.

G3 (Bethesda). 2018 May 4;8(5):1391-1398. doi: 10.1534/g3.117.300443.


De-novo emergence of SINE retroposons during the early evolution of passerine birds.

Suh A, Bachg S, Donnellan S, Joseph L, Brosius J, Kriegs JO, Schmitz J.

Mob DNA. 2017 Dec 14;8:21. doi: 10.1186/s13100-017-0104-1. eCollection 2017.


Natural selection beyond genes: Identification and analyses of evolutionarily conserved elements in the genome of the collared flycatcher (Ficedula albicollis).

Craig RJ, Suh A, Wang M, Ellegren H.

Mol Ecol. 2018 Jan;27(2):476-492. doi: 10.1111/mec.14462. Epub 2018 Jan 9.


Grooving of nanoparticles using sublimable liquid crystal for transparent omniphobic surface.

Kim DS, Suh A, Yang S, Yoon DK.

J Colloid Interface Sci. 2018 Mar 1;513:585-591. doi: 10.1016/j.jcis.2017.11.033. Epub 2017 Nov 14.


Rapid Increase in Genome Size as a Consequence of Transposable Element Hyperactivity in Wood-White (Leptidea) Butterflies.

Talla V, Suh A, Kalsoom F, Dinca V, Vila R, Friberg M, Wiklund C, Backström N.

Genome Biol Evol. 2017 Oct 1;9(10):2491-2505. doi: 10.1093/gbe/evx163.


Deciphering the Origin and Evolution of Hepatitis B Viruses by Means of a Family of Non-enveloped Fish Viruses.

Lauber C, Seitz S, Mattei S, Suh A, Beck J, Herstein J, Börold J, Salzburger W, Kaderali L, Briggs JAG, Bartenschlager R.

Cell Host Microbe. 2017 Sep 13;22(3):387-399.e6. doi: 10.1016/j.chom.2017.07.019. Epub 2017 Aug 31.


Distance-Learning, ADHD Quality Improvement in Primary Care: A Cluster-Randomized Trial.

Fiks AG, Mayne SL, Michel JJ, Miller J, Abraham M, Suh A, Jawad AF, Guevara JP, Grundmeier RW, Blum NJ, Power TJ.

J Dev Behav Pediatr. 2017 Oct;38(8):573-583. doi: 10.1097/DBP.0000000000000490.


Amperometric Microsensors Monitoring Glutamate-Evoked In Situ Responses of Nitric Oxide and Carbon Monoxide from Live Human Neuroblastoma Cells.

Ha Y, Heo C, Woo J, Ryu H, Lee Y, Suh AM.

Sensors (Basel). 2017 Jul 19;17(7). pii: E1661. doi: 10.3390/s17071661.


Whole-genome patterns of linkage disequilibrium across flycatcher populations clarify the causes and consequences of fine-scale recombination rate variation in birds.

Kawakami T, Mugal CF, Suh A, Nater A, Burri R, Smeds L, Ellegren H.

Mol Ecol. 2017 Aug;26(16):4158-4172. doi: 10.1111/mec.14197. Epub 2017 Jul 5.


A Social Media Peer Group for Mothers To Prevent Obesity from Infancy: The Grow2Gether Randomized Trial.

Fiks AG, Gruver RS, Bishop-Gilyard CT, Shults J, Virudachalam S, Suh AW, Gerdes M, Kalra GK, DeRusso PA, Lieberman A, Weng D, Elovitz MA, Berkowitz RI, Power TJ.

Child Obes. 2017 Oct;13(5):356-368. doi: 10.1089/chi.2017.0042. Epub 2017 May 30.


Combination of short-read, long-read, and optical mapping assemblies reveals large-scale tandem repeat arrays with population genetic implications.

Weissensteiner MH, Pang AWC, Bunikis I, Höijer I, Vinnere-Petterson O, Suh A, Wolf JBW.

Genome Res. 2017 May;27(5):697-708. doi: 10.1101/gr.215095.116. Epub 2017 Mar 30.


Dynamics of genome size evolution in birds and mammals.

Kapusta A, Suh A, Feschotte C.

Proc Natl Acad Sci U S A. 2017 Feb 21;114(8):E1460-E1469. doi: 10.1073/pnas.1616702114. Epub 2017 Feb 8.


Evolution and Diversity of Transposable Elements in Vertebrate Genomes.

Sotero-Caio CG, Platt RN 2nd, Suh A, Ray DA.

Genome Biol Evol. 2017 Jan 1;9(1):161-177. doi: 10.1093/gbe/evw264. Review.


Evolution of bird genomes-a transposon's-eye view.

Kapusta A, Suh A.

Ann N Y Acad Sci. 2017 Feb;1389(1):164-185. doi: 10.1111/nyas.13295. Epub 2016 Dec 20. Review.


A Pilot Randomized Trial of a Video Patient Decision Aid to Facilitate Early Intervention Referrals From Primary Care.

Jimenez ME, DuRivage NE, Bezpalko O, Suh A, Wade R, Blum NJ, Fiks AG.

Clin Pediatr (Phila). 2017 Mar;56(3):268-277. doi: 10.1177/0009922816677038. Epub 2016 Nov 12.


Asthma Control Test.

duRivage N, Ross M, Mayne SL, Suh A, Weng D, Grundmeier RW, Fiks AG.

Clin Pediatr (Phila). 2017 Apr;56(4):341-347. doi: 10.1177/0009922816675013. Epub 2016 Oct 24.


Evolution of heterogeneous genome differentiation across multiple contact zones in a crow species complex.

Vijay N, Bossu CM, Poelstra JW, Weissensteiner MH, Suh A, Kryukov AP, Wolf JB.

Nat Commun. 2016 Oct 31;7:13195. doi: 10.1038/ncomms13195.


Bridging the Gap Between Burn Pits and Waste-to-Energy Technology: Safe and Effective Waste Management in Contingency Operations.

Barnes MT, Baird CP, Suh AD, Crutchfield JA, Amina K, Eninger RM.

US Army Med Dep J. 2016 Oct-Dec;(3-16):85-98. No abstract available.


A Social Media Peer Group Intervention for Mothers to Prevent Obesity and Promote Healthy Growth from Infancy: Development and Pilot Trial.

Gruver RS, Bishop-Gilyard CT, Lieberman A, Gerdes M, Virudachalam S, Suh AW, Kalra GK, Magge SN, Shults J, Schreiner MS, Power TJ, Berkowitz RI, Fiks AG.

JMIR Res Protoc. 2016 Aug 2;5(3):e159. doi: 10.2196/resprot.5276.


Adoption of a Portal for the Primary Care Management of Pediatric Asthma: A Mixed-Methods Implementation Study.

Fiks AG, DuRivage N, Mayne SL, Finch S, Ross ME, Giacomini K, Suh A, McCarn B, Brandt E, Karavite D, Staton EW, Shone LP, McGoldrick V, Noonan K, Miller D, Lehmann CU, Pace WD, Grundmeier RW.

J Med Internet Res. 2016 Jun 29;18(6):e172. doi: 10.2196/jmir.5610.


Proof-of-Concept of Polymeric Sol-Gels in Multi-Drug Delivery and Intraoperative Image-Guided Surgery for Peritoneal Ovarian Cancer.

McKenzie M, Betts D, Suh A, Bui K, Tang R, Liang K, Achilefu S, Kwon GS, Cho H.

Pharm Res. 2016 Sep;33(9):2298-306. doi: 10.1007/s11095-016-1968-3. Epub 2016 Jun 9.


The evolution of scale sensilla in the transition from land to sea in elapid snakes.

Crowe-Riddell JM, Snelling EP, Watson AP, Suh AK, Partridge JC, Sanders KL.

Open Biol. 2016 Jun;6(6). pii: 160054. doi: 10.1098/rsob.160054.


Ancient horizontal transfers of retrotransposons between birds and ancestors of human pathogenic nematodes.

Suh A, Witt CC, Menger J, Sadanandan KR, Podsiadlowski L, Gerth M, Weigert A, McGuire JA, Mudge J, Edwards SV, Rheindt FE.

Nat Commun. 2016 Apr 21;7:11396. doi: 10.1038/ncomms11396.


Mothers' and Clinicians' Priorities for Obesity Prevention Among Black, High-Risk Infants.

Virudachalam S, Gruver RS, Gerdes M, Power TJ, Magge SN, Shults J, Faerber JA, Kalra GK, Bishop-Gilyard CT, Suh AW, Berkowitz RI, Fiks AG.

Am J Prev Med. 2016 Jul;51(1):46-53. doi: 10.1016/j.amepre.2015.12.015.


Oligonucleotide-based biosensors for in vitro diagnostics and environmental hazard detection.

Jung IY, Lee EH, Suh AY, Lee SJ, Lee H.

Anal Bioanal Chem. 2016 Apr;408(10):2383-406. doi: 10.1007/s00216-015-9212-2. Epub 2016 Jan 18. Review.


Hydrogel-Based Drug Delivery Systems for Poorly Water-Soluble Drugs.

McKenzie M, Betts D, Suh A, Bui K, Kim LD, Cho H.

Molecules. 2015 Nov 13;20(11):20397-408. doi: 10.3390/molecules201119705. Review.


Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers.

Burri R, Nater A, Kawakami T, Mugal CF, Olason PI, Smeds L, Suh A, Dutoit L, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, Sætre GP, Török J, Ellegren H.

Genome Res. 2015 Nov;25(11):1656-65. doi: 10.1101/gr.196485.115. Epub 2015 Sep 9.


The Dynamics of Incomplete Lineage Sorting across the Ancient Adaptive Radiation of Neoavian Birds.

Suh A, Smeds L, Ellegren H.

PLoS Biol. 2015 Aug 18;13(8):e1002224. doi: 10.1371/journal.pbio.1002224. eCollection 2015 Aug.


The Specific Requirements for CR1 Retrotransposition Explain the Scarcity of Retrogenes in Birds.

Suh A.

J Mol Evol. 2015 Aug;81(1-2):18-20. doi: 10.1007/s00239-015-9692-x. Epub 2015 Jul 30.


Evolutionary analysis of the female-specific avian W chromosome.

Smeds L, Warmuth V, Bolivar P, Uebbing S, Burri R, Suh A, Nater A, Bureš S, Garamszegi LZ, Hogner S, Moreno J, Qvarnström A, Ružić M, Sæther SA, Sætre GP, Török J, Ellegren H.

Nat Commun. 2015 Jun 4;6:7330. doi: 10.1038/ncomms8330.


Targeted Capture of Phylogenetically Informative Ves SINE Insertions in Genus Myotis.

Platt RN 2nd, Zhang Y, Witherspoon DJ, Xing J, Suh A, Keith MS, Jorde LB, Stevens RD, Ray DA.

Genome Biol Evol. 2015 May 25;7(6):1664-75. doi: 10.1093/gbe/evv099.


Parent-reported outcomes of a shared decision-making portal in asthma: a practice-based RCT.

Fiks AG, Mayne SL, Karavite DJ, Suh A, O'Hara R, Localio AR, Ross M, Grundmeier RW.

Pediatrics. 2015 Apr;135(4):e965-73. doi: 10.1542/peds.2014-3167. Epub 2015 Mar 9.


Phylogenomic analyses data of the avian phylogenomics project.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Alfaro-Núñez A, Narula N, Liu L, Burt D, Ellegren H, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G; Avian Phylogenomics Consortium.

Gigascience. 2015 Feb 12;4:4. doi: 10.1186/s13742-014-0038-1. eCollection 2015.


Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs.

Green RE, Braun EL, Armstrong J, Earl D, Nguyen N, Hickey G, Vandewege MW, St John JA, Capella-Gutiérrez S, Castoe TA, Kern C, Fujita MK, Opazo JC, Jurka J, Kojima KK, Caballero J, Hubley RM, Smit AF, Platt RN, Lavoie CA, Ramakodi MP, Finger JW Jr, Suh A, Isberg SR, Miles L, Chong AY, Jaratlerdsiri W, Gongora J, Moran C, Iriarte A, McCormack J, Burgess SC, Edwards SV, Lyons E, Williams C, Breen M, Howard JT, Gresham CR, Peterson DG, Schmitz J, Pollock DD, Haussler D, Triplett EW, Zhang G, Irie N, Jarvis ED, Brochu CA, Schmidt CJ, McCarthy FM, Faircloth BC, Hoffmann FG, Glenn TC, Gabaldón T, Paten B, Ray DA.

Science. 2014 Dec 12;346(6215):1254449. doi: 10.1126/science.1254449. Epub 2014 Dec 11.


Whole-genome analyses resolve early branches in the tree of life of modern birds.

Jarvis ED, Mirarab S, Aberer AJ, Li B, Houde P, Li C, Ho SY, Faircloth BC, Nabholz B, Howard JT, Suh A, Weber CC, da Fonseca RR, Li J, Zhang F, Li H, Zhou L, Narula N, Liu L, Ganapathy G, Boussau B, Bayzid MS, Zavidovych V, Subramanian S, Gabaldón T, Capella-Gutiérrez S, Huerta-Cepas J, Rekepalli B, Munch K, Schierup M, Lindow B, Warren WC, Ray D, Green RE, Bruford MW, Zhan X, Dixon A, Li S, Li N, Huang Y, Derryberry EP, Bertelsen MF, Sheldon FH, Brumfield RT, Mello CV, Lovell PV, Wirthlin M, Schneider MP, Prosdocimi F, Samaniego JA, Vargas Velazquez AM, Alfaro-Núñez A, Campos PF, Petersen B, Sicheritz-Ponten T, Pas A, Bailey T, Scofield P, Bunce M, Lambert DM, Zhou Q, Perelman P, Driskell AC, Shapiro B, Xiong Z, Zeng Y, Liu S, Li Z, Liu B, Wu K, Xiao J, Yinqi X, Zheng Q, Zhang Y, Yang H, Wang J, Smeds L, Rheindt FE, Braun M, Fjeldsa J, Orlando L, Barker FK, Jønsson KA, Johnson W, Koepfli KP, O'Brien S, Haussler D, Ryder OA, Rahbek C, Willerslev E, Graves GR, Glenn TC, McCormack J, Burt D, Ellegren H, Alström P, Edwards SV, Stamatakis A, Mindell DP, Cracraft J, Braun EL, Warnow T, Jun W, Gilbert MT, Zhang G.

Science. 2014 Dec 12;346(6215):1320-31. doi: 10.1126/science.1253451.


Multiple lineages of ancient CR1 retroposons shaped the early genome evolution of amniotes.

Suh A, Churakov G, Ramakodi MP, Platt RN 2nd, Jurka J, Kojima KK, Caballero J, Smit AF, Vliet KA, Hoffmann FG, Brosius J, Green RE, Braun EL, Ray DA, Schmitz J.

Genome Biol Evol. 2014 Dec 11;7(1):205-17. doi: 10.1093/gbe/evu256.


Early mesozoic coexistence of amniotes and hepadnaviridae.

Suh A, Weber CC, Kehlmaier C, Braun EL, Green RE, Fritz U, Ray DA, Ellegren H.

PLoS Genet. 2014 Dec 11;10(12):e1004559. doi: 10.1371/journal.pgen.1004559. eCollection 2014 Dec.


Crystallization and preliminary X-ray diffraction analysis of a high-affinity phosphate-binding protein endowed with phosphatase activity from Pseudomonas aeruginosa PAO1.

Djeghader A, Gotthard G, Suh A, Gonzalez D, Scott K, Chabriere E, Elias M.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Oct;69(Pt 10):1143-6. doi: 10.1107/S1744309113024172. Epub 2013 Sep 28.


DING proteins from phylogenetically different species share high degrees of sequence and structure homology and block transcription of HIV-1 LTR promoter.

Sachdeva R, Darbinian N, Khalili K, Amini S, Gonzalez D, Djeghader A, Chabriére E, Suh A, Scott K, Simm M.

PLoS One. 2013 Aug 6;8(8):e69623. doi: 10.1371/journal.pone.0069623. Print 2013.


Pseudomonas DING proteins as human transcriptional regulators and HIV-1 antagonists.

Suh A, Le Douce V, Rohr O, Schwartz C, Scott K.

Virol J. 2013 Jul 15;10:234. doi: 10.1186/1743-422X-10-234.


The genome of a Mesozoic paleovirus reveals the evolution of hepatitis B viruses.

Suh A, Brosius J, Schmitz J, Kriegs JO.

Nat Commun. 2013;4:1791. doi: 10.1038/ncomms2798.


Crystallization and preliminary X-ray diffraction analysis of a DING protein from Pseudomonas aeruginosa PA14.

Djeghader A, Gotthard G, Suh A, Gonzalez D, Scott K, Elias M, Chabriere E.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):425-9. doi: 10.1107/S1744309113005356. Epub 2013 Mar 28.


Gastrointestinal and renal excretion of potassium in African-Americans and White Americans.

Rosa RM, De Jesus E, Sperling K, Suh A, Gmurczyk A, Myrie KA, Rosner K, Lerma E, Yu W, Breuer R, Young JB.

J Hypertens. 2012 Dec;30(12):2373-7. doi: 10.1097/HJH.0b013e32835a27b3.


Local public health systems and the incidence of sexually transmitted diseases.

Rodriguez HP, Chen J, Owusu-Edusei K, Suh A, Bekemeier B.

Am J Public Health. 2012 Sep;102(9):1773-81. Epub 2012 Jul 19.


A universal method for the study of CR1 retroposons in nonmodel bird genomes.

Suh A, Kriegs JO, Donnellan S, Brosius J, Schmitz J.

Mol Biol Evol. 2012 Oct;29(10):2899-903. Epub 2012 Apr 20.


Mesozoic retroposons reveal parrots as the closest living relatives of passerine birds.

Suh A, Paus M, Kiefmann M, Churakov G, Franke FA, Brosius J, Kriegs JO, Schmitz J.

Nat Commun. 2011 Aug 23;2:443. doi: 10.1038/ncomms1448.

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