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Items: 1 to 50 of 1103

1.

Novel Osteogenic Behaviors around Hydrophilic and Radical-Free 4-META/MMA-TBB: Implications of an Osseointegrating Bone Cement.

Sugita Y, Okubo T, Saita M, Ishijima M, Torii Y, Tanaka M, Iwasaki C, Sekiya T, Tabuchi M, Mohammadzadeh Rezaei N, Taniyama T, Sato N, Saruta J, Hasegawa M, Hirota M, Park W, Lee MC, Maeda H, Ogawa T.

Int J Mol Sci. 2020 Mar 31;21(7). pii: E2405. doi: 10.3390/ijms21072405.

2.

Materials design of Kitaev spin liquids beyond the Jackeli-Khaliullin mechanism.

Motome Y, Sano R, Jang S, Sugita Y, Kato Y.

J Phys Condens Matter. 2020 Apr 1. doi: 10.1088/1361-648X/ab8525. [Epub ahead of print]

PMID:
32235048
3.

Free Energy Analysis of a Conformational Change of Heme ABC Transporter BhuUV-T.

Tamura K, Sugita Y.

J Phys Chem Lett. 2020 Mar 27:2824-2829. doi: 10.1021/acs.jpclett.0c00547. [Epub ahead of print]

PMID:
32202796
4.

[Participation/Dispatch Reports on International Conferences in 2019].

Washizuka F, Sugita Y, Ishibashi T, Osawa K, Abe S, Katori K, Taniguchi T.

Nihon Hoshasen Gijutsu Gakkai Zasshi. 2020;76(3):297-303. doi: 10.6009/jjrt.2020_JSRT_76.3.297. Japanese. No abstract available.

5.

Rituximab, cyclophosphamide, doxorubicin, vincristine, and prednisolone combined with high-dose methotrexate plus intrathecal chemotherapy for newly diagnosed intravascular large B-cell lymphoma (PRIMEUR-IVL): a multicentre, single-arm, phase 2 trial.

Shimada K, Yamaguchi M, Atsuta Y, Matsue K, Sato K, Kusumoto S, Nagai H, Takizawa J, Fukuhara N, Nagafuji K, Miyazaki K, Ohtsuka E, Okamoto M, Sugita Y, Uchida T, Kayukawa S, Wake A, Ennishi D, Kondo Y, Izumi T, Kin Y, Tsukasaki K, Hashimoto D, Yuge M, Yanagisawa A, Kuwatsuka Y, Shimada S, Masaki Y, Niitsu N, Kiyoi H, Suzuki R, Tokunaga T, Nakamura S, Kinoshita T.

Lancet Oncol. 2020 Apr;21(4):593-602. doi: 10.1016/S1470-2045(20)30059-0. Epub 2020 Mar 11.

PMID:
32171071
6.

Pediatric congenital hydronephrosis (ureteropelvic junction obstruction): Medical management guide.

Kohno M, Ogawa T, Kojima Y, Sakoda A, Johnin K, Sugita Y, Nakane A, Noguchi M, Moriya K, Hattori M, Hayashi Y, Kubota M.

Int J Urol. 2020 Mar 11. doi: 10.1111/iju.14207. [Epub ahead of print]

PMID:
32162424
7.

Epicardial adipose tissue is tightly associated with exercise intolerance in patients with type 2 diabetes mellitus with asymptomatic left ventricular structural and functional abnormalities.

Sugita Y, Ito K, Sakurai S, Sakai S, Kuno S.

J Diabetes Complications. 2020 May;34(5):107552. doi: 10.1016/j.jdiacomp.2020.107552. Epub 2020 Jan 30.

PMID:
32139127
8.

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis.

Fujinami D, Motomura H, Oshima H, Mahin AA, Elsayed KM, Zendo T, Sugita Y, Sonomoto K, Kohda D.

J Phys Chem Lett. 2020 Mar 5;11(5):1934-1939. doi: 10.1021/acs.jpclett.9b03591. Epub 2020 Feb 25.

PMID:
32067463
9.

UV-Photofunctionalization of Titanium Promotes Mechanical Anchorage in A Rat Osteoporosis Model.

Taniyama T, Saruta J, Mohammadzadeh Rezaei N, Nakhaei K, Ghassemi A, Hirota M, Okubo T, Ikeda T, Sugita Y, Hasegawa M, Ogawa T.

Int J Mol Sci. 2020 Feb 12;21(4). pii: E1235. doi: 10.3390/ijms21041235.

10.

Retinal ON and OFF pathways contribute to initial optokinetic responses with different temporal characteristics.

Sugita Y, Miura K, Furukawa T.

Eur J Neurosci. 2020 Feb 6. doi: 10.1111/ejn.14697. [Epub ahead of print]

PMID:
32027443
11.

Use of single-molecule time-series data for refining conformational dynamics in molecular simulations.

Matsunaga Y, Sugita Y.

Curr Opin Struct Biol. 2020 Jan 28;61:153-159. doi: 10.1016/j.sbi.2019.12.022. [Epub ahead of print] Review.

12.

A Newly Created Meso-, Micro-, and Nano-Scale Rough Titanium Surface Promotes Bone-Implant Integration.

Hasegawa M, Saruta J, Hirota M, Taniyama T, Sugita Y, Kubo K, Ishijima M, Ikeda T, Maeda H, Ogawa T.

Int J Mol Sci. 2020 Jan 25;21(3). pii: E783. doi: 10.3390/ijms21030783.

13.

Building a macro-mixing dual-basin Gō model using the Multistate Bennett Acceptance Ratio.

Shinobu A, Kobayashi C, Matsunaga Y, Sugita Y.

Biophys Physicobiol. 2019 Nov 29;16:310-321. doi: 10.2142/biophysico.16.0_310. eCollection 2019.

14.

Tuning of Titanium Microfiber Scaffold with UV-Photofunctionalization for Enhanced Osteoblast Affinity and Function.

Iwasaki C, Hirota M, Tanaka M, Kitajima H, Tabuchi M, Ishijima M, Park W, Sugita Y, Miyazawa K, Goto S, Ikeda T, Ogawa T.

Int J Mol Sci. 2020 Jan 23;21(3). pii: E738. doi: 10.3390/ijms21030738.

15.

Expression of the ghrelin/growth hormone secretagogue receptor axis and its functional role in promoting tumor growth in primary central nervous system lymphomas.

Muta H, Sugita Y, Furuta T, Shiimura Y, Ohshima K, Nakashima K, Sato K, Morioka M, Abe H, Nozawa T, Fujii Y, Kakita A.

Neuropathology. 2020 Jan 10. doi: 10.1111/neup.12634. [Epub ahead of print]

PMID:
31925841
16.

Further Quantitative Structure-Cytotoxicity Relationship Analysis of 3-Styrylchromones.

Takao K, Hoshi K, Sakagami H, Shi H, Bandow K, Nagai J, Uesawa Y, Tomomura A, Tomomura M, Sugita Y.

Anticancer Res. 2020 Jan;40(1):87-95. doi: 10.21873/anticanres.13929.

PMID:
31892556
17.

Reactive Eccrine Syringofibroadenoma on the Heel, Clinically Mimicking Squamous Cell Carcinoma.

Sugita Y, Makino T, Matsui K, Shimizu T.

Case Rep Dermatol Med. 2019 Dec 4;2019:4735739. doi: 10.1155/2019/4735739. eCollection 2019.

18.

Quantitative Structure-Cytotoxicity Relationship of 2-Styrylchromones.

Uesawa Y, Nagai J, Shi H, Sakagami H, Bandow K, Tomomura A, Tomomura M, Endo S, Takao K, Sugita Y.

Anticancer Res. 2019 Dec;39(12):6489-6498. doi: 10.21873/anticanres.13863.

PMID:
31810913
19.

Quantitative Structure-Cytotoxicity Relationship of 2-Arylazolylchromones and 2-Triazolylchromones.

Nagai J, Shi H, Sezaki N, Yoshida N, Bandow K, Uesawa Y, Sakagami H, Tomomura M, Tomomura A, Takao K, Sugita Y.

Anticancer Res. 2019 Dec;39(12):6479-6488. doi: 10.21873/anticanres.13862.

PMID:
31810912
20.

Role of the N-Terminal Transmembrane Helix Contacts in the Activation of FGFR3.

Matsuoka D, Kamiya M, Sato T, Sugita Y.

J Comput Chem. 2020 Mar 5;41(6):561-572. doi: 10.1002/jcc.26122. Epub 2019 Dec 5.

PMID:
31804721
21.

Implicit Micelle Model for Membrane Proteins Using Superellipsoid Approximation.

Mori T, Sugita Y.

J Chem Theory Comput. 2020 Jan 14;16(1):711-724. doi: 10.1021/acs.jctc.9b00783. Epub 2019 Dec 9.

PMID:
31765139
22.

Promotion of oxidative stress is associated with mitochondrial dysfunction and muscle atrophy in aging mice.

Kadoguchi T, Shimada K, Miyazaki T, Kitamura K, Kunimoto M, Aikawa T, Sugita Y, Ouchi S, Shiozawa T, Yokoyama-Nishitani M, Fukao K, Miyosawa K, Isoda K, Daida H.

Geriatr Gerontol Int. 2020 Jan;20(1):78-84. doi: 10.1111/ggi.13818. Epub 2019 Nov 22.

PMID:
31758637
23.

Clustering and dynamics of crowded proteins near membranes and their influence on membrane bending.

Nawrocki G, Im W, Sugita Y, Feig M.

Proc Natl Acad Sci U S A. 2019 Dec 3;116(49):24562-24567. doi: 10.1073/pnas.1910771116. Epub 2019 Nov 18.

PMID:
31740611
24.

Synthesis of natural product-like polyprenylated phenols and quinones: Evaluation of their neuroprotective activities.

Kamauchi H, Oda T, Horiuchi K, Takao K, Sugita Y.

Bioorg Med Chem. 2020 Jan 1;28(1):115156. doi: 10.1016/j.bmc.2019.115156. Epub 2019 Nov 8.

PMID:
31740200
25.

Structural and Functional Basis for LILRB Immune Checkpoint Receptor Recognition of HLA-G Isoforms.

Kuroki K, Matsubara H, Kanda R, Miyashita N, Shiroishi M, Fukunaga Y, Kamishikiryo J, Fukunaga A, Fukuhara H, Hirose K, Hunt JS, Sugita Y, Kita S, Ose T, Maenaka K.

J Immunol. 2019 Dec 15;203(12):3386-3394. doi: 10.4049/jimmunol.1900562. Epub 2019 Nov 6.

PMID:
31694909
26.

Structural Mechanisms Underlying Activity Changes in an AMPA-type Glutamate Receptor Induced by Substitutions in Its Ligand-Binding Domain.

Sakakura M, Ohkubo Y, Oshima H, Re S, Ito M, Sugita Y, Takahashi H.

Structure. 2019 Nov 5;27(11):1698-1709.e5. doi: 10.1016/j.str.2019.09.004. Epub 2019 Oct 1.

PMID:
31585769
27.

2-Styrylchromone derivatives as potent and selective monoamine oxidase B inhibitors.

Takao K, Endo S, Nagai J, Kamauchi H, Takemura Y, Uesawa Y, Sugita Y.

Bioorg Chem. 2019 Nov;92:103285. doi: 10.1016/j.bioorg.2019.103285. Epub 2019 Sep 18.

PMID:
31561103
28.

Replica-Exchange Umbrella Sampling Combined with Gaussian Accelerated Molecular Dynamics for Free-Energy Calculation of Biomolecules.

Oshima H, Re S, Sugita Y.

J Chem Theory Comput. 2019 Oct 8;15(10):5199-5208. doi: 10.1021/acs.jctc.9b00761. Epub 2019 Sep 27.

PMID:
31539245
29.

Development and validation of the Japanese version of the Quality of Life Assessment of Spina Bifida in Teenagers (QUALAS-T-J).

Kawahara T, Sugita Y, Momose H, Szymanski KM, Hida E, Yamazaki A.

Pediatr Int. 2019 Dec;61(12):1232-1238. doi: 10.1111/ped.14003. Epub 2019 Dec 19.

PMID:
31487089
30.

Detection of MYD88 L265P mutation by next-generation deep sequencing in peripheral blood mononuclear cells of Waldenström's macroglobulinemia and IgM monoclonal gammopathy of undetermined significance.

Nakamura A, Ohwada C, Takeuchi M, Takeda Y, Tsukamoto S, Mimura N, Nagisa OH, Sugita Y, Tanaka H, Wakita H, Aotsuka N, Matsue K, Yokote K, Ohara O, Nakaseko C, Sakaida E.

PLoS One. 2019 Sep 4;14(9):e0221941. doi: 10.1371/journal.pone.0221941. eCollection 2019.

31.

Encounter complexes and hidden poses of kinase-inhibitor binding on the free-energy landscape.

Re S, Oshima H, Kasahara K, Kamiya M, Sugita Y.

Proc Natl Acad Sci U S A. 2019 Sep 10;116(37):18404-18409. doi: 10.1073/pnas.1904707116. Epub 2019 Aug 26.

32.

Replica-Exchange Methods for Biomolecular Simulations.

Sugita Y, Kamiya M, Oshima H, Re S.

Methods Mol Biol. 2019;2022:155-177. doi: 10.1007/978-1-4939-9608-7_7.

PMID:
31396903
33.

De Novo Prediction of Binders and Nonbinders for T4 Lysozyme by gREST Simulations.

Niitsu A, Re S, Oshima H, Kamiya M, Sugita Y.

J Chem Inf Model. 2019 Sep 23;59(9):3879-3888. doi: 10.1021/acs.jcim.9b00416. Epub 2019 Aug 21.

PMID:
31390205
34.

Favorable clinical application for segmental bronchial closure based on experiment results.

Kuroda H, Sugita Y, Nakanishi K, Oya Y, Sakakura N, Sakao Y.

J Thorac Dis. 2019 Jun;11(6):2267-2273. doi: 10.21037/jtd.2019.06.18.

35.

Neoadjuvant Chemotherapy Increases PD-L1 Expression and CD8+ Tumor-infiltrating Lymphocytes in Esophageal Squamous Cell Carcinoma.

Fukuoka E, Yamashita K, Tanaka T, Sawada R, Sugita Y, Arimoto A, Fujita M, Takiguchi G, Matsuda T, Oshikiri T, Nakamura T, Suzuki S, Kakeji Y.

Anticancer Res. 2019 Aug;39(8):4539-4548. doi: 10.21873/anticanres.13631.

PMID:
31366557
36.

Chemo-Mechanical Coupling in the Transport Cycle of a Heme ABC Transporter.

Tamura K, Sugimoto H, Shiro Y, Sugita Y.

J Phys Chem B. 2019 Aug 29;123(34):7270-7281. doi: 10.1021/acs.jpcb.9b04356. Epub 2019 Aug 16.

PMID:
31362510
37.

Whole-Cell Models and Simulations in Molecular Detail.

Feig M, Sugita Y.

Annu Rev Cell Dev Biol. 2019 Oct 6;35:191-211. doi: 10.1146/annurev-cellbio-100617-062542. Epub 2019 Jul 12.

PMID:
31299173
38.

Pathogenic free-living amoebic encephalitis in Japan.

Hara T, Yagita K, Sugita Y.

Neuropathology. 2019 Aug;39(4):251-258. doi: 10.1111/neup.12582. Epub 2019 Jun 26. Review.

PMID:
31243796
39.

CT evaluation of extranodal extension of cervical lymph node metastases in patients with oral squamous cell carcinoma using deep learning classification.

Ariji Y, Sugita Y, Nagao T, Nakayama A, Fukuda M, Kise Y, Nozawa M, Nishiyama M, Katumata A, Ariji E.

Oral Radiol. 2020 Apr;36(2):148-155. doi: 10.1007/s11282-019-00391-4. Epub 2019 Jun 13.

PMID:
31197738
40.

Frontiers in CryoEM Modeling.

Palermo G, Sugita Y, Wriggers W, Amaro RE.

J Chem Inf Model. 2019 Jul 22;59(7):3091-3093. doi: 10.1021/acs.jcim.9b00412. Epub 2019 Jun 13. No abstract available.

41.

Successful postoperative recovery management after thoracoscopic lobectomy and segmentectomy using an ERAS-based protocol of immediate ice cream intake and early ambulation: a 3-year study.

Kuroda H, Sugita Y, Watanabe K, Nakanishi K, Sakakura N, Naito Y, Sakao Y.

Cancer Manag Res. 2019 May 7;11:4201-4207. doi: 10.2147/CMAR.S195219. eCollection 2019.

42.

Treatment guidelines for persistent cloaca, cloacal exstrophy, and Mayer-Rokitansky-Küster-Häuser syndrome for the appropriate transitional care of patients.

Kubota M, Osuga Y, Kato K, Ishikura K, Kaneko K, Akazawa K, Yonekura T, Tazuke Y, Ieiri S, Fujino A, Ueno S, Hayashi Y, Yoshino K, Yanai T, Iwai J, Yamaguchi T, Amae S, Yamazaki Y, Sugita Y, Kohno M, Kanamori Y, Bitoh Y, Shinkai M, Ohno Y, Kinoshita Y.

Surg Today. 2019 Dec;49(12):985-1002. doi: 10.1007/s00595-019-01810-z. Epub 2019 Apr 22. Review.

PMID:
31011869
43.

Scaling molecular dynamics beyond 100,000 processor cores for large-scale biophysical simulations.

Jung J, Nishima W, Daniels M, Bascom G, Kobayashi C, Adedoyin A, Wall M, Lappala A, Phillips D, Fischer W, Tung CS, Schlick T, Sugita Y, Sanbonmatsu KY.

J Comput Chem. 2019 Aug 5;40(21):1919-1930. doi: 10.1002/jcc.25840. Epub 2019 Apr 17.

PMID:
30994934
44.

Expression of GLUT1 in Pseudopalisaded and Perivascular Tumor Cells Is an Independent Prognostic Factor for Patients With Glioblastomas.

Komaki S, Sugita Y, Furuta T, Yamada K, Moritsubo M, Abe H, Akiba J, Miyagi N, Nakamura H, Miyoshi H, Ohshima K, Morioka M.

J Neuropathol Exp Neurol. 2019 May 1;78(5):389-397. doi: 10.1093/jnen/nly124.

45.

Impaired osteoblastic behavior and function on saliva-contaminated titanium and its restoration by UV treatment.

Hirota M, Ikeda T, Sugita Y, Ishijima M, Hirota S, Ogawa T.

Mater Sci Eng C Mater Biol Appl. 2019 Jul;100:165-177. doi: 10.1016/j.msec.2019.03.008. Epub 2019 Mar 3.

PMID:
30948050
46.

Design, synthesis and evaluation of 2-(indolylmethylidene)-2,3-dihydro-1-benzofuran-3-one and 2-(indolyl)-4H-chromen-4-one derivatives as novel monoamine oxidases inhibitors.

Takao K, U S, Kamauchi H, Sugita Y.

Bioorg Chem. 2019 Jun;87:594-600. doi: 10.1016/j.bioorg.2019.03.042. Epub 2019 Mar 16.

PMID:
30933784
47.

Evaluation of the Molecular State of Piperine in Cyclodextrin Complexes by Near-Infrared Spectroscopy and Solid-State Fluorescence Measurements.

Ezawa T, Inoue Y, Murata I, Takao K, Sugita Y, Kanamoto I.

Int J Med Chem. 2019 Feb 11;2019:7530480. doi: 10.1155/2019/7530480. eCollection 2019.

48.

Evolution of local conductance pathways in a single-molecule junction studied using the three-dimensional dynamic probe method.

Taninaka A, Yoshida S, Sugita Y, Takeuchi O, Shigekawa H.

Nanoscale. 2019 Mar 28;11(13):5951-5959. doi: 10.1039/c9nr00717b.

PMID:
30869706
49.

Leptomeningeal Carcinomatosis After Neoplastic Cerebral Aneurysm Rupture.

Koga M, Aoki T, Negoto T, Makizono T, Sugi K, Fujimori K, Kajiwara S, Komaki S, Yoshitomi M, Sugita Y, Morioka M.

World Neurosurg. 2019 Jun;126:281-284. doi: 10.1016/j.wneu.2019.02.058. Epub 2019 Feb 26.

PMID:
30822576
50.

Anharmonic Vibrational Analysis of Biomolecules and Solvated Molecules Using Hybrid QM/MM Computations.

Yagi K, Yamada K, Kobayashi C, Sugita Y.

J Chem Theory Comput. 2019 Mar 12;15(3):1924-1938. doi: 10.1021/acs.jctc.8b01193. Epub 2019 Feb 21.

PMID:
30730746

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