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Items: 1 to 50 of 92

1.

Dynamic nuclear polarization on a hybridized hammerhead ribozyme: An explorative study of RNA folding and direct DNP with a paramagnetic metal ion cofactor.

Daube D, Vogel M, Suess B, Corzilius B.

Solid State Nucl Magn Reson. 2019 Apr 22;101:21-30. doi: 10.1016/j.ssnmr.2019.04.005. [Epub ahead of print]

PMID:
31078101
2.

Binding of tetracycline to its aptamer determined by 2D-correlated Mn2+ hyperfine spectroscopy.

Hetzke T, Bowen AM, Vogel M, Gauger M, Suess B, Prisner TF.

J Magn Reson. 2019 Jun;303:105-114. doi: 10.1016/j.jmr.2019.04.011. Epub 2019 Apr 28.

PMID:
31039520
3.

Next-level riboswitch development-implementation of Capture-SELEX facilitates identification of a new synthetic riboswitch.

Boussebayle A, Torka D, Ollivaud S, Braun J, Bofill-Bosch C, Dombrowski M, Groher F, Hamacher K, Suess B.

Nucleic Acids Res. 2019 May 21;47(9):4883-4895. doi: 10.1093/nar/gkz216.

4.

RNA-based Capture-SELEX for the selection of small molecule-binding aptamers.

Boussebayle A, Groher F, Suess B.

Methods. 2019 Apr 4. pii: S1046-2023(18)30327-X. doi: 10.1016/j.ymeth.2019.04.004. [Epub ahead of print]

PMID:
30953759
5.

miR-574-5p as RNA decoy for CUGBP1 stimulates human lung tumor growth by mPGES-1 induction.

Saul MJ, Baumann I, Bruno A, Emmerich AC, Wellstein J, Ottinger SM, Contursi A, Dovizio M, Donnini S, Tacconelli S, Raouf J, Idborg H, Stein S, Korotkova M, Savai R, Terzuoli E, Sala G, Seeger W, Jakobsson PJ, Patrignani P, Suess B, Steinhilber D.

FASEB J. 2019 Jun;33(6):6933-6947. doi: 10.1096/fj.201802547R. Epub 2019 Mar 28.

PMID:
30922080
6.

Promoter RNA sequencing (PRSeq) for the massive and quantitative promoter analysis in vitro.

Ohuchi S, Mascher T, Suess B.

Sci Rep. 2019 Feb 28;9(1):3118. doi: 10.1038/s41598-019-39892-x.

7.

Complex Formation of the Tetracycline-Binding Aptamer Investigated by Specific Cross-Relaxation under DNP.

Aladin V, Vogel M, Binder R, Burghardt I, Suess B, Corzilius B.

Angew Chem Int Ed Engl. 2019 Apr 1;58(15):4863-4868. doi: 10.1002/anie.201811941. Epub 2019 Mar 8.

PMID:
30768874
8.

Characterization and Inkjet Printing of an RNA Aptamer for Paper-Based Biosensing of Ciprofloxacin.

Jaeger J, Groher F, Stamm J, Spiehl D, Braun J, Dörsam E, Suess B.

Biosensors (Basel). 2019 Jan 2;9(1). pii: E7. doi: 10.3390/bios9010007.

9.

A light-responsive RNA aptamer for an azobenzene derivative.

Lotz TS, Halbritter T, Kaiser C, Rudolph MM, Kraus L, Groher F, Steinwand S, Wachtveitl J, Heckel A, Suess B.

Nucleic Acids Res. 2019 Feb 28;47(4):2029-2040. doi: 10.1093/nar/gky1225.

10.

Tuning the Performance of Synthetic Riboswitches using Machine Learning.

Groher AC, Jager S, Schneider C, Groher F, Hamacher K, Suess B.

ACS Synth Biol. 2019 Jan 18;8(1):34-44. doi: 10.1021/acssynbio.8b00207. Epub 2019 Jan 8.

PMID:
30513199
11.

Influence of Mg2+ on the conformational flexibility of a tetracycline aptamer.

Hetzke T, Vogel M, Gophane DB, Weigand JE, Suess B, Sigurdsson ST, Prisner TF.

RNA. 2019 Jan;25(1):158-167. doi: 10.1261/rna.068684.118. Epub 2018 Oct 18.

PMID:
30337459
12.

Small-Molecule-Binding Riboswitches.

Lotz TS, Suess B.

Microbiol Spectr. 2018 Aug;6(4). doi: 10.1128/microbiolspec.RWR-0025-2018. Review.

PMID:
30084346
13.

A small, portable RNA device for the control of exon skipping in mammalian cells.

Vogel M, Weigand JE, Kluge B, Grez M, Suess B.

Nucleic Acids Res. 2018 May 4;46(8):e48. doi: 10.1093/nar/gky062.

14.

Riboswitching with ciprofloxacin-development and characterization of a novel RNA regulator.

Groher F, Bofill-Bosch C, Schneider C, Braun J, Jager S, Geißler K, Hamacher K, Suess B.

Nucleic Acids Res. 2018 Feb 28;46(4):2121-2132. doi: 10.1093/nar/gkx1319.

15.

Altered stoichiometry of an evolved RNA aptamer.

Ohuchi S, Suess B.

RNA. 2018 Apr;24(4):480-485. doi: 10.1261/rna.063610.117. Epub 2017 Dec 28.

16.

Design and implementation of a synthetic pre-miR switch for controlling miRNA biogenesis in mammals.

Atanasov J, Groher F, Weigand JE, Suess B.

Nucleic Acids Res. 2017 Dec 15;45(22):e181. doi: 10.1093/nar/gkx858.

17.

TGFβ/SMAD signalling modulates MLL and MLL-AF4 mediated 5-lipoxygenase promoter activation.

Saul MJ, Groher F, Hegewald AB, Müller-McNicoll M, Marschalek R, Suess B, Steinhilber D.

Prostaglandins Other Lipid Mediat. 2017 Nov;133:60-67. doi: 10.1016/j.prostaglandins.2017.07.006. Epub 2017 Aug 11.

PMID:
28803964
18.

ROC'n'Ribo: Characterizing a Riboswitching Expression System by Modeling Single-Cell Data.

Schneider C, Bronstein L, Diemer J, Koeppl H, Suess B.

ACS Synth Biol. 2017 Jul 21;6(7):1211-1224. doi: 10.1021/acssynbio.6b00322. Epub 2017 Jun 30.

PMID:
28591515
19.

Pausing guides RNA folding to populate transiently stable RNA structures for riboswitch-based transcription regulation.

Steinert H, Sochor F, Wacker A, Buck J, Helmling C, Hiller F, Keyhani S, Noeske J, Grimm S, Rudolph MM, Keller H, Mooney RA, Landick R, Suess B, Fürtig B, Wöhnert J, Schwalbe H.

Elife. 2017 May 25;6. pii: e21297. doi: 10.7554/eLife.21297.

20.

An inhibitory RNA aptamer against the lambda cI repressor shows transcriptional activator activity in vivo.

Ohuchi S, Suess B.

FEBS Lett. 2017 May;591(10):1429-1436. doi: 10.1002/1873-3468.12653. Epub 2017 May 2.

21.

Aptamers in Bordeaux, 24-25 June 2016.

Toulmé JJ, Giangrande PH, Mayer G, Suess B, Ducongé F, Sullenger B, de Franciscis V, Darfeuille F, Peyrin E.

Pharmaceuticals (Basel). 2017 Jan 20;10(1). pii: E14. doi: 10.3390/ph10010014.

22.

Ligand binding to 2΄-deoxyguanosine sensing riboswitch in metabolic context.

Kim YB, Wacker A, Laer KV, Rogov VV, Suess B, Schwalbe H.

Nucleic Acids Res. 2017 May 19;45(9):5375-5386. doi: 10.1093/nar/gkx016.

23.

UPF1 regulates myeloid cell functions and S100A9 expression by the hnRNP E2/miRNA-328 balance.

Saul MJ, Stein S, Grez M, Jakobsson PJ, Steinhilber D, Suess B.

Sci Rep. 2016 Aug 30;6:31995. doi: 10.1038/srep31995.

24.

The Odorant ( R)-Citronellal Attenuates Caffeine Bitterness by Inhibiting the Bitter Receptors TAS2R43 and TAS2R46.

Suess B, Brockhoff A, Meyerhof W, Hofmann T.

J Agric Food Chem. 2018 Mar 14;66(10):2301-2311. doi: 10.1021/acs.jafc.6b03554. Epub 2016 Sep 1.

PMID:
27569025
25.

In vitro selection of antibiotic-binding aptamers.

Groher F, Suess B.

Methods. 2016 Aug 15;106:42-50. doi: 10.1016/j.ymeth.2016.05.008. Epub 2016 May 17. Review.

PMID:
27223401
26.

RIBOSWITCHES. (Meta-)genome mining for new ribo-regulators.

Sommer MO, Suess B.

Science. 2016 Apr 8;352(6282):144-5. doi: 10.1126/science.aaf6189. No abstract available.

PMID:
27124438
27.

Identification of RNA aptamers with riboswitching properties.

Schneider C, Suess B.

Methods. 2016 Mar 15;97:44-50. doi: 10.1016/j.ymeth.2015.12.001. Epub 2015 Dec 7. Review.

PMID:
26672481
28.

What a Difference an OH Makes: Conformational Dynamics as the Basis for the Ligand Specificity of the Neomycin-Sensing Riboswitch.

Duchardt-Ferner E, Gottstein-Schmidtke SR, Weigand JE, Ohlenschläger O, Wurm JP, Hammann C, Suess B, Wöhnert J.

Angew Chem Int Ed Engl. 2016 Jan 22;55(4):1527-30. doi: 10.1002/anie.201507365. Epub 2015 Dec 11.

PMID:
26661511
29.

Label-Free Determination of the Dissociation Constant of Small Molecule-Aptamer Interaction by Isothermal Titration Calorimetry.

Vogel M, Suess B.

Methods Mol Biol. 2016;1380:113-25. doi: 10.1007/978-1-4939-3197-2_9.

PMID:
26552820
30.

A dual control mechanism synchronizes riboflavin and sulphur metabolism in Bacillus subtilis.

Pedrolli DB, Kühm C, Sévin DC, Vockenhuber MP, Sauer U, Suess B, Mack M.

Proc Natl Acad Sci U S A. 2015 Nov 10;112(45):14054-9. doi: 10.1073/pnas.1515024112. Epub 2015 Oct 22.

31.

Dynamic nuclear polarization of nucleic acid with endogenously bound manganese.

Wenk P, Kaushik M, Richter D, Vogel M, Suess B, Corzilius B.

J Biomol NMR. 2015 Sep;63(1):97-109. doi: 10.1007/s10858-015-9972-1. Epub 2015 Jul 29.

PMID:
26219517
32.

A Universal Aptamer Chimera for the Delivery of Functional microRNA-126.

Rohde JH, Weigand JE, Suess B, Dimmeler S.

Nucleic Acid Ther. 2015 Jun;25(3):141-51. doi: 10.1089/nat.2014.0501. Epub 2015 Apr 6.

PMID:
25844955
33.

Identification of metE as a second target of the sRNA scr5239 in Streptomyces coelicolor.

Vockenhuber MP, Heueis N, Suess B.

PLoS One. 2015 Mar 18;10(3):e0120147. doi: 10.1371/journal.pone.0120147. eCollection 2015.

34.

Water-soluble Py-BIPS spiropyrans as photoswitches for biological applications.

Özçoban C, Halbritter T, Steinwand S, Herzig LM, Kohl-Landgraf J, Askari N, Groher F, Fürtig B, Richter C, Schwalbe H, Suess B, Wachtveitl J, Heckel A.

Org Lett. 2015 Mar 20;17(6):1517-20. doi: 10.1021/acs.orglett.5b00397. Epub 2015 Mar 11.

PMID:
25760939
35.

RNA aptamers as genetic control devices: the potential of riboswitches as synthetic elements for regulating gene expression.

Berens C, Groher F, Suess B.

Biotechnol J. 2015 Feb;10(2):246-57. doi: 10.1002/biot.201300498. Review.

PMID:
25676052
36.

Conditional control of gene expression by synthetic riboswitches in Streptomyces coelicolor.

Rudolph MM, Vockenhuber MP, Suess B.

Methods Enzymol. 2015;550:283-99. doi: 10.1016/bs.mie.2014.10.036. Epub 2014 Dec 26.

PMID:
25605391
37.

5-lipoxygenase is a direct target of miR-19a-3p and miR-125b-5p.

Busch S, Auth E, Scholl F, Huenecke S, Koehl U, Suess B, Steinhilber D.

J Immunol. 2015 Feb 15;194(4):1646-53. doi: 10.4049/jimmunol.1402163. Epub 2015 Jan 14.

38.

Tetracycline determines the conformation of its aptamer at physiological magnesium concentrations.

Reuss AJ, Vogel M, Weigand JE, Suess B, Wachtveitl J.

Biophys J. 2014 Dec 16;107(12):2962-2971. doi: 10.1016/j.bpj.2014.11.001.

39.

Human taste and umami receptor responses to chemosensorica generated by Maillard-type N²-alkyl- and N²-arylthiomethylation of guanosine 5'-monophosphates.

Suess B, Brockhoff A, Degenhardt A, Billmayer S, Meyerhof W, Hofmann T.

J Agric Food Chem. 2014 Nov 26;62(47):11429-40. doi: 10.1021/jf504686s. Epub 2014 Nov 17.

PMID:
25375264
40.

Conditional control of mammalian gene expression by tetracycline-dependent hammerhead ribozymes.

Beilstein K, Wittmann A, Grez M, Suess B.

ACS Synth Biol. 2015 May 15;4(5):526-34. doi: 10.1021/sb500270h. Epub 2014 Oct 27.

PMID:
25265236
41.

Riboswitch engineering - making the all-important second and third steps.

Berens C, Suess B.

Curr Opin Biotechnol. 2015 Feb;31:10-5. doi: 10.1016/j.copbio.2014.07.014. Epub 2014 Aug 17. Review.

PMID:
25137633
42.

Sequence elements distal to the ligand binding pocket modulate the efficiency of a synthetic riboswitch.

Weigand JE, Gottstein-Schmidtke SR, Demolli S, Groher F, Duchardt-Ferner E, Wöhnert J, Suess B.

Chembiochem. 2014 Jul 21;15(11):1627-37. doi: 10.1002/cbic.201402067. Epub 2014 Jun 20.

PMID:
24954073
43.

Building a stable RNA U-turn with a protonated cytidine.

Gottstein-Schmidtke SR, Duchardt-Ferner E, Groher F, Weigand JE, Gottstein D, Suess B, Wöhnert J.

RNA. 2014 Aug;20(8):1163-72. doi: 10.1261/rna.043083.113. Epub 2014 Jun 20.

44.

Synthetic riboswitches - A tool comes of age.

Groher F, Suess B.

Biochim Biophys Acta. 2014 Oct;1839(10):964-973. doi: 10.1016/j.bbagrm.2014.05.005. Epub 2014 May 17. Review.

PMID:
24844178
45.

Development of β -lactamase as a tool for monitoring conditional gene expression by a tetracycline-riboswitch in Methanosarcina acetivorans.

Demolli S, Geist MM, Weigand JE, Matschiavelli N, Suess B, Rother M.

Archaea. 2014 Jan 20;2014:725610. doi: 10.1155/2014/725610. eCollection 2014.

46.

Small non-coding RNAs in streptomycetes.

Heueis N, Vockenhuber MP, Suess B.

RNA Biol. 2014;11(5):464-9. Epub 2014 Mar 6. Review.

47.

5-lipoxygenase mRNA and protein isoforms.

Ochs MJ, Suess B, Steinhilber D.

Basic Clin Pharmacol Toxicol. 2014 Jan;114(1):78-82. doi: 10.1111/bcpt.12115. Epub 2013 Sep 10. Review.

48.

Monitoring the expression level of coding and non-coding RNAs using a TetR inducing aptamer tag.

Meitert J, Aram R, Wiesemann K, Weigand JE, Suess B.

Bioorg Med Chem. 2013 Oct 15;21(20):6233-8. doi: 10.1016/j.bmc.2013.07.035. Epub 2013 Jul 31.

PMID:
23993971
49.

Bioappearance and pharmacokinetics of bioactives upon coffee consumption.

Lang R, Dieminger N, Beusch A, Lee YM, Dunkel A, Suess B, Skurk T, Wahl A, Hauner H, Hofmann T.

Anal Bioanal Chem. 2013 Oct;405(26):8487-503. doi: 10.1007/s00216-013-7288-0. Epub 2013 Aug 28.

PMID:
23982107
50.

MicroRNAs-novel therapeutic targets of eicosanoid signalling.

Ochs MJ, Steinhilber D, Suess B.

Basic Clin Pharmacol Toxicol. 2014 Jan;114(1):92-6. doi: 10.1111/bcpt.12116. Epub 2013 Sep 18. Review.

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