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Items: 1 to 50 of 64

1.

Compositional and structural dynamics of the ruminal microbiota in dairy heifers and its relationship to methane production.

Cunha CS, Marcondes MI, Veloso CM, Mantovani HC, Pereira LGR, Tomich TR, Dill-McFarland KA, Suen G.

J Sci Food Agric. 2018 May 31. doi: 10.1002/jsfa.9162. [Epub ahead of print]

PMID:
29851082
2.

Influence of sampling technique and bedding type on the milk microbiota: Results of a pilot study.

Metzger SA, Hernandez LL, Skarlupka JH, Suen G, Walker TM, Ruegg PL.

J Dairy Sci. 2018 Jul;101(7):6346-6356. doi: 10.3168/jds.2017-14212. Epub 2018 Apr 19.

PMID:
29680645
3.

Wisconsin microbiome study, a cross-sectional investigation of dietary fibre, microbiome composition and antibiotic-resistant organisms: rationale and methods.

Eggers S, Malecki KM, Peppard P, Mares J, Shirley D, Shukla SK, Poulsen K, Gangnon R, Duster M, Kates A, Suen G, Sethi AK, Safdar N.

BMJ Open. 2018 Mar 27;8(3):e019450. doi: 10.1136/bmjopen-2017-019450.

4.

The Ruminococci: key symbionts of the gut ecosystem.

La Reau AJ, Suen G.

J Microbiol. 2018 Mar;56(3):199-208. doi: 10.1007/s12275-018-8024-4. Epub 2018 Feb 28. Review.

PMID:
29492877
5.

Bacterial Community Dynamics across the Gastrointestinal Tracts of Dairy Calves during Preweaning Development.

Dias J, Marcondes MI, Motta de Souza S, Cardoso da Mata E Silva B, Fontes Noronha M, Tassinari Resende R, Machado FS, Cuquetto Mantovani H, Dill-McFarland KA, Suen G.

Appl Environ Microbiol. 2018 Apr 16;84(9). pii: e02675-17. doi: 10.1128/AEM.02675-17. Print 2018 May 1.

PMID:
29475865
6.

Dietary changes during weaning shape the gut microbiota of red pandas (Ailurus fulgens).

Williams CL, Dill-McFarland KA, Sparks DL, Kouba AJ, Willard ST, Suen G, Brown AE.

Conserv Physiol. 2018 Jan 6;6(1):cox075. doi: 10.1093/conphys/cox075. eCollection 2018.

7.

Camelina Seed Supplementation at Two Dietary Fat Levels Change Ruminal Bacterial Community Composition in a Dual-Flow Continuous Culture System.

Dai X, Weimer PJ, Dill-McFarland KA, Brandao VLN, Suen G, Faciola AP.

Front Microbiol. 2017 Nov 3;8:2147. doi: 10.3389/fmicb.2017.02147. eCollection 2017.

8.

Assessing the impact of rumen microbial communities on methane emissions and production traits in Holstein cows in a tropical climate.

Cunha CS, Veloso CM, Marcondes MI, Mantovani HC, Tomich TR, Pereira LGR, Ferreira MFL, Dill-McFarland KA, Suen G.

Syst Appl Microbiol. 2017 Dec;40(8):492-499. doi: 10.1016/j.syapm.2017.07.008. Epub 2017 Oct 16.

PMID:
29113689
9.

Effect of Pre-weaning Diet on the Ruminal Archaeal, Bacterial, and Fungal Communities of Dairy Calves.

Dias J, Marcondes MI, Noronha MF, Resende RT, Machado FS, Mantovani HC, Dill-McFarland KA, Suen G.

Front Microbiol. 2017 Aug 15;8:1553. doi: 10.3389/fmicb.2017.01553. eCollection 2017.

10.

Fibrobacter communities in the gastrointestinal tracts of diverse hindgut-fermenting herbivores are distinct from those of the rumen.

Neumann AP, McCormick CA, Suen G.

Environ Microbiol. 2017 Sep;19(9):3768-3783. doi: 10.1111/1462-2920.13878. Epub 2017 Aug 24.

11.

Transient changes in milk production efficiency and bacterial community composition resulting from near-total exchange of ruminal contents between high- and low-efficiency Holstein cows.

Weimer PJ, Cox MS, Vieira de Paula T, Lin M, Hall MB, Suen G.

J Dairy Sci. 2017 Sep;100(9):7165-7182. doi: 10.3168/jds.2017-12746. Epub 2017 Jul 6.

PMID:
28690067
12.

Sequence-based analysis of the genus Ruminococcus resolves its phylogeny and reveals strong host association.

La Reau AJ, Meier-Kolthoff JP, Suen G.

Microb Genom. 2016 Dec 12;2(12):e000099. doi: 10.1099/mgen.0.000099. eCollection 2016 Dec.

13.

Microbial succession in the gastrointestinal tract of dairy cows from 2 weeks to first lactation.

Dill-McFarland KA, Breaker JD, Suen G.

Sci Rep. 2017 Jan 18;7:40864. doi: 10.1038/srep40864.

14.

The human laryngeal microbiome: effects of cigarette smoke and reflux.

Jetté ME, Dill-McFarland KA, Hanshew AS, Suen G, Thibeault SL.

Sci Rep. 2016 Oct 24;6:35882. doi: 10.1038/srep35882.

15.

Dietary Shifts May Trigger Dysbiosis and Mucous Stools in Giant Pandas (Ailuropoda melanoleuca).

Williams CL, Dill-McFarland KA, Vandewege MW, Sparks DL, Willard ST, Kouba AJ, Suen G, Brown AE.

Front Microbiol. 2016 May 6;7:661. doi: 10.3389/fmicb.2016.00661. eCollection 2016.

16.

Small genome of the fungus Escovopsis weberi, a specialized disease agent of ant agriculture.

de Man TJ, Stajich JE, Kubicek CP, Teiling C, Chenthamara K, Atanasova L, Druzhinina IS, Levenkova N, Birnbaum SS, Barribeau SM, Bozick BA, Suen G, Currie CR, Gerardo NM.

Proc Natl Acad Sci U S A. 2016 Mar 29;113(13):3567-72. doi: 10.1073/pnas.1518501113. Epub 2016 Mar 14.

17.

Bears Arouse Interest in Microbiota's Role in Health.

Dill-McFarland KA, Suen G, Carey HV.

Trends Microbiol. 2016 Apr;24(4):245-246. doi: 10.1016/j.tim.2016.01.011. Epub 2016 Feb 10.

PMID:
26873548
18.

Evaluating Models of Cellulose Degradation by Fibrobacter succinogenes S85.

Burnet MC, Dohnalkova AC, Neumann AP, Lipton MS, Smith RD, Suen G, Callister SJ.

PLoS One. 2015 Dec 2;10(12):e0143809. doi: 10.1371/journal.pone.0143809. eCollection 2015.

19.

Differences in major bacterial populations in the intestines of mature broilers after feeding virginiamycin or bacitracin methylene disalicylate.

Neumann AP, Suen G.

J Appl Microbiol. 2015 Dec;119(6):1515-26. doi: 10.1111/jam.12960. Epub 2015 Nov 9.

PMID:
26425940
20.

Phylogenetic and amino acid conservation analyses of bacterial L-aspartate-α-decarboxylase and of its zymogen-maturation protein reveal a putative interaction domain.

Stuecker TN, Bramhacharya S, Hodge-Hanson KM, Suen G, Escalante-Semerena JC.

BMC Res Notes. 2015 Aug 15;8:354. doi: 10.1186/s13104-015-1314-6.

21.

Diet specialization selects for an unusual and simplified gut microbiota in two- and three-toed sloths.

Dill-McFarland KA, Weimer PJ, Pauli JN, Peery MZ, Suen G.

Environ Microbiol. 2016 May;18(5):1391-402. doi: 10.1111/1462-2920.13022. Epub 2015 Sep 10.

PMID:
26271635
22.

Ruminal Bacterial Community Composition in Dairy Cows Is Dynamic over the Course of Two Lactations and Correlates with Feed Efficiency.

Jewell KA, McCormick CA, Odt CL, Weimer PJ, Suen G.

Appl Environ Microbiol. 2015 Jul;81(14):4697-710. doi: 10.1128/AEM.00720-15. Epub 2015 May 1.

23.

Bacterial communities in the rumen of Holstein heifers differ when fed orchardgrass as pasture vs. hay.

Mohammed R, Brink GE, Stevenson DM, Neumann AP, Beauchemin KA, Suen G, Weimer PJ.

Front Microbiol. 2014 Dec 9;5:689. doi: 10.3389/fmicb.2014.00689. eCollection 2014.

24.

Unique aspects of fiber degradation by the ruminal ethanologen Ruminococcus albus 7 revealed by physiological and transcriptomic analysis.

Christopherson MR, Dawson JA, Stevenson DM, Cunningham AC, Bramhacharya S, Weimer PJ, Kendziorski C, Suen G.

BMC Genomics. 2014 Dec 4;15:1066. doi: 10.1186/1471-2164-15-1066.

25.

Convergent bacterial microbiotas in the fungal agricultural systems of insects.

Aylward FO, Suen G, Biedermann PH, Adams AS, Scott JJ, Malfatti SA, Glavina del Rio T, Tringe SG, Poulsen M, Raffa KF, Klepzig KD, Currie CR.

MBio. 2014 Nov 18;5(6):e02077. doi: 10.1128/mBio.02077-14.

26.

Hibernation alters the diversity and composition of mucosa-associated bacteria while enhancing antimicrobial defence in the gut of 13-lined ground squirrels.

Dill-McFarland KA, Neil KL, Zeng A, Sprenger RJ, Kurtz CC, Suen G, Carey HV.

Mol Ecol. 2014 Sep;23(18):4658-69. doi: 10.1111/mec.12884. Epub 2014 Sep 3.

PMID:
25130694
27.

An analysis of the ruminal bacterial microbiota in West African Dwarf sheep fed grass- and tree-based diets.

Omoniyi LA, Jewell KA, Isah OA, Neumann AP, Onwuka CF, Onagbesan OM, Suen G.

J Appl Microbiol. 2014 May;116(5):1094-105. doi: 10.1111/jam.12450. Epub 2014 Feb 13.

28.

A phylogenetic analysis of the phylum Fibrobacteres.

Jewell KA, Scott JJ, Adams SM, Suen G.

Syst Appl Microbiol. 2013 Sep;36(6):376-82. doi: 10.1016/j.syapm.2013.04.002. Epub 2013 Jun 5.

PMID:
23759599
29.

Social insect genomes exhibit dramatic evolution in gene composition and regulation while preserving regulatory features linked to sociality.

Simola DF, Wissler L, Donahue G, Waterhouse RM, Helmkampf M, Roux J, Nygaard S, Glastad KM, Hagen DE, Viljakainen L, Reese JT, Hunt BG, Graur D, Elhaik E, Kriventseva EV, Wen J, Parker BJ, Cash E, Privman E, Childers CP, Muñoz-Torres MC, Boomsma JJ, Bornberg-Bauer E, Currie CR, Elsik CG, Suen G, Goodisman MA, Keller L, Liebig J, Rawls A, Reinberg D, Smith CD, Smith CR, Tsutsui N, Wurm Y, Zdobnov EM, Berger SL, Gadau J.

Genome Res. 2013 Aug;23(8):1235-47. doi: 10.1101/gr.155408.113. Epub 2013 May 1.

30.

Leucoagaricus gongylophorus produces diverse enzymes for the degradation of recalcitrant plant polymers in leaf-cutter ant fungus gardens.

Aylward FO, Burnum-Johnson KE, Tringe SG, Teiling C, Tremmel DM, Moeller JA, Scott JJ, Barry KW, Piehowski PD, Nicora CD, Malfatti SA, Monroe ME, Purvine SO, Goodwin LA, Smith RD, Weinstock GM, Gerardo NM, Suen G, Lipton MS, Currie CR.

Appl Environ Microbiol. 2013 Jun;79(12):3770-8. doi: 10.1128/AEM.03833-12. Epub 2013 Apr 12.

31.

Comparison of 26 sphingomonad genomes reveals diverse environmental adaptations and biodegradative capabilities.

Aylward FO, McDonald BR, Adams SM, Valenzuela A, Schmidt RA, Goodwin LA, Woyke T, Currie CR, Suen G, Poulsen M.

Appl Environ Microbiol. 2013 Jun;79(12):3724-33. doi: 10.1128/AEM.00518-13. Epub 2013 Apr 5.

32.

Mountain pine beetles colonizing historical and naive host trees are associated with a bacterial community highly enriched in genes contributing to terpene metabolism.

Adams AS, Aylward FO, Adams SM, Erbilgin N, Aukema BH, Currie CR, Suen G, Raffa KF.

Appl Environ Microbiol. 2013 Jun;79(11):3468-75. doi: 10.1128/AEM.00068-13. Epub 2013 Mar 29.

33.

Characterizing the microbiota across the gastrointestinal tract of a Brazilian Nelore steer.

de Oliveira MN, Jewell KA, Freitas FS, Benjamin LA, Tótola MR, Borges AC, Moraes CA, Suen G.

Vet Microbiol. 2013 Jun 28;164(3-4):307-14. doi: 10.1016/j.vetmic.2013.02.013. Epub 2013 Feb 24.

PMID:
23490556
34.

The genome sequences of Cellulomonas fimi and "Cellvibrio gilvus" reveal the cellulolytic strategies of two facultative anaerobes, transfer of "Cellvibrio gilvus" to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov.

Christopherson MR, Suen G, Bramhacharya S, Jewell KA, Aylward FO, Mead D, Brumm PJ.

PLoS One. 2013;8(1):e53954. doi: 10.1371/journal.pone.0053954. Epub 2013 Jan 14.

35.

The genomic basis for the evolution of a novel form of cellular reproduction in the bacterium Epulopiscium.

Miller DA, Suen G, Clements KD, Angert ER.

BMC Genomics. 2012 Jun 21;13:265. doi: 10.1186/1471-2164-13-265.

36.

Metagenomic and metaproteomic insights into bacterial communities in leaf-cutter ant fungus gardens.

Aylward FO, Burnum KE, Scott JJ, Suen G, Tringe SG, Adams SM, Barry KW, Nicora CD, Piehowski PD, Purvine SO, Starrett GJ, Goodwin LA, Smith RD, Lipton MS, Currie CR.

ISME J. 2012 Sep;6(9):1688-701. doi: 10.1038/ismej.2012.10. Epub 2012 Mar 1.

37.

The Evolutionary Innovation of Nutritional Symbioses in Leaf-Cutter Ants.

Aylward FO, Currie CR, Suen G.

Insects. 2012 Jan 6;3(1):41-61. doi: 10.3390/insects3010041. Review.

38.

The entomopathogenic bacterial endosymbionts Xenorhabdus and Photorhabdus: convergent lifestyles from divergent genomes.

Chaston JM, Suen G, Tucker SL, Andersen AW, Bhasin A, Bode E, Bode HB, Brachmann AO, Cowles CE, Cowles KN, Darby C, de Léon L, Drace K, Du Z, Givaudan A, Herbert Tran EE, Jewell KA, Knack JJ, Krasomil-Osterfeld KC, Kukor R, Lanois A, Latreille P, Leimgruber NK, Lipke CM, Liu R, Lu X, Martens EC, Marri PR, Médigue C, Menard ML, Miller NM, Morales-Soto N, Norton S, Ogier JC, Orchard SS, Park D, Park Y, Qurollo BA, Sugar DR, Richards GR, Rouy Z, Slominski B, Slominski K, Snyder H, Tjaden BC, van der Hoeven R, Welch RD, Wheeler C, Xiang B, Barbazuk B, Gaudriault S, Goodner B, Slater SC, Forst S, Goldman BS, Goodrich-Blair H.

PLoS One. 2011;6(11):e27909. doi: 10.1371/journal.pone.0027909. Epub 2011 Nov 18.

39.

The genomic impact of 100 million years of social evolution in seven ant species.

Gadau J, Helmkampf M, Nygaard S, Roux J, Simola DF, Smith CR, Suen G, Wurm Y, Smith CD.

Trends Genet. 2012 Jan;28(1):14-21. doi: 10.1016/j.tig.2011.08.005. Epub 2011 Oct 5. Review.

40.

Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7.

Suen G, Stevenson DM, Bruce DC, Chertkov O, Copeland A, Cheng JF, Detter C, Detter JC, Goodwin LA, Han CS, Hauser LJ, Ivanova NN, Kyrpides NC, Land ML, Lapidus A, Lucas S, Ovchinnikova G, Pitluck S, Tapia R, Woyke T, Boyum J, Mead D, Weimer PJ.

J Bacteriol. 2011 Oct;193(19):5574-5. doi: 10.1128/JB.05621-11.

41.

A cascade of coregulating enhancer binding proteins initiates and propagates a multicellular developmental program.

Giglio KM, Caberoy N, Suen G, Kaiser D, Garza AG.

Proc Natl Acad Sci U S A. 2011 Aug 9;108(32):E431-9. doi: 10.1073/pnas.1105876108. Epub 2011 Jun 13.

42.

The complete genome sequence of Fibrobacter succinogenes S85 reveals a cellulolytic and metabolic specialist.

Suen G, Weimer PJ, Stevenson DM, Aylward FO, Boyum J, Deneke J, Drinkwater C, Ivanova NN, Mikhailova N, Chertkov O, Goodwin LA, Currie CR, Mead D, Brumm PJ.

PLoS One. 2011 Apr 19;6(4):e18814. doi: 10.1371/journal.pone.0018814.

43.

Genome sequence of Streptomyces griseus strain XylebKG-1, an ambrosia beetle-associated actinomycete.

Grubbs KJ, Biedermann PH, Suen G, Adams SM, Moeller JA, Klassen JL, Goodwin LA, Woyke T, Munk AC, Bruce D, Detter C, Tapia R, Han CS, Currie CR.

J Bacteriol. 2011 Jun;193(11):2890-1. doi: 10.1128/JB.00330-11. Epub 2011 Apr 1.

44.

Complete genome sequence of the cellulose-degrading bacterium Cellulosilyticum lentocellum.

Miller DA, Suen G, Bruce D, Copeland A, Cheng JF, Detter C, Goodwin LA, Han CS, Hauser LJ, Land ML, Lapidus A, Lucas S, Meincke L, Pitluck S, Tapia R, Teshima H, Woyke T, Fox BG, Angert ER, Currie CR.

J Bacteriol. 2011 May;193(9):2357-8. doi: 10.1128/JB.00239-11. Epub 2011 Mar 11.

45.

Cellulose-degrading bacteria associated with the invasive woodwasp Sirex noctilio.

Adams AS, Jordan MS, Adams SM, Suen G, Goodwin LA, Davenport KW, Currie CR, Raffa KF.

ISME J. 2011 Aug;5(8):1323-31. doi: 10.1038/ismej.2011.14. Epub 2011 Mar 3.

46.

The genome sequence of the leaf-cutter ant Atta cephalotes reveals insights into its obligate symbiotic lifestyle.

Suen G, Teiling C, Li L, Holt C, Abouheif E, Bornberg-Bauer E, Bouffard P, Caldera EJ, Cash E, Cavanaugh A, Denas O, Elhaik E, Favé MJ, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Harkins TT, Helmkampf M, Hu H, Johnson BR, Kim J, Marsh SE, Moeller JA, Muñoz-Torres MC, Murphy MC, Naughton MC, Nigam S, Overson R, Rajakumar R, Reese JT, Scott JJ, Smith CR, Tao S, Tsutsui ND, Viljakainen L, Wissler L, Yandell MD, Zimmer F, Taylor J, Slater SC, Clifton SW, Warren WC, Elsik CG, Smith CD, Weinstock GM, Gerardo NM, Currie CR.

PLoS Genet. 2011 Feb 10;7(2):e1002007. doi: 10.1371/journal.pgen.1002007.

47.

Draft genome of the red harvester ant Pogonomyrmex barbatus.

Smith CR, Smith CD, Robertson HM, Helmkampf M, Zimin A, Yandell M, Holt C, Hu H, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Favé MJ, Fernandes V, Gibson JD, Graur D, Gronenberg W, Grubbs KJ, Hagen DE, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Mathis KA, Munoz-Torres MC, Murphy MC, Mustard JA, Nakamura R, Niehuis O, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Suen G, Tao S, Torres CW, Tsutsui ND, Viljakainen L, Wolschin F, Gadau J.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5667-72. doi: 10.1073/pnas.1007901108. Epub 2011 Jan 31.

48.

Draft genome of the globally widespread and invasive Argentine ant (Linepithema humile).

Smith CD, Zimin A, Holt C, Abouheif E, Benton R, Cash E, Croset V, Currie CR, Elhaik E, Elsik CG, Fave MJ, Fernandes V, Gadau J, Gibson JD, Graur D, Grubbs KJ, Hagen DE, Helmkampf M, Holley JA, Hu H, Viniegra AS, Johnson BR, Johnson RM, Khila A, Kim JW, Laird J, Mathis KA, Moeller JA, Muñoz-Torres MC, Murphy MC, Nakamura R, Nigam S, Overson RP, Placek JE, Rajakumar R, Reese JT, Robertson HM, Smith CR, Suarez AV, Suen G, Suhr EL, Tao S, Torres CW, van Wilgenburg E, Viljakainen L, Walden KK, Wild AL, Yandell M, Yorke JA, Tsutsui ND.

Proc Natl Acad Sci U S A. 2011 Apr 5;108(14):5673-8. doi: 10.1073/pnas.1008617108. Epub 2011 Jan 31.

49.

Units of plasticity in bacterial genomes: new insight from the comparative genomics of two bacteria interacting with invertebrates, Photorhabdus and Xenorhabdus.

Ogier JC, Calteau A, Forst S, Goodrich-Blair H, Roche D, Rouy Z, Suen G, Zumbihl R, Givaudan A, Tailliez P, Médigue C, Gaudriault S.

BMC Genomics. 2010 Oct 15;11:568. doi: 10.1186/1471-2164-11-568.

50.

An insect herbivore microbiome with high plant biomass-degrading capacity.

Suen G, Scott JJ, Aylward FO, Adams SM, Tringe SG, Pinto-Tomás AA, Foster CE, Pauly M, Weimer PJ, Barry KW, Goodwin LA, Bouffard P, Li L, Osterberger J, Harkins TT, Slater SC, Donohue TJ, Currie CR.

PLoS Genet. 2010 Sep 23;6(9):e1001129. doi: 10.1371/journal.pgen.1001129.

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