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Items: 1 to 50 of 64

1.

Evolutionary history and adaptation of a human pygmy population of Flores Island, Indonesia.

Tucci S, Vohr SH, McCoy RC, Vernot B, Robinson MR, Barbieri C, Nelson BJ, Fu W, Purnomo GA, Sudoyo H, Eichler EE, Barbujani G, Visscher PM, Akey JM, Green RE.

Science. 2018 Aug 3;361(6401):511-516. doi: 10.1126/science.aar8486.

PMID:
30072539
2.

Transcription factor 7-like 2 single nucleotide polymorphisms are associated with lipid profile in the Balinese.

Oktavianthi S, Saraswati MR, Suastika K, Dwipayana P, Sulfianti A, Hayati RF, Trimarsanto H, Febinia CA, Sudoyo H, Malik SG.

Mol Biol Rep. 2018 Oct;45(5):1135-1143. doi: 10.1007/s11033-018-4265-x. Epub 2018 Jul 19.

PMID:
30027476
3.

Kinship structures create persistent channels for language transmission.

Lansing JS, Abundo C, Jacobs GS, Guillot EG, Thurner S, Downey SS, Chew LY, Bhattacharya T, Chung NN, Sudoyo H, Cox MP.

Proc Natl Acad Sci U S A. 2017 Dec 5;114(49):12910-12915. doi: 10.1073/pnas.1706416114. Epub 2017 Nov 20.

4.

Complex Patterns of Admixture across the Indonesian Archipelago.

Hudjashov G, Karafet TM, Lawson DJ, Downey S, Savina O, Sudoyo H, Lansing JS, Hammer MF, Cox MP.

Mol Biol Evol. 2017 Oct 1;34(10):2439-2452. doi: 10.1093/molbev/msx196.

5.

Genomic landscape of human diversity across Madagascar.

Pierron D, Heiske M, Razafindrazaka H, Rakoto I, Rabetokotany N, Ravololomanga B, Rakotozafy LM, Rakotomalala MM, Razafiarivony M, Rasoarifetra B, Raharijesy MA, Razafindralambo L, Ramilisonina, Fanony F, Lejamble S, Thomas O, Mohamed Abdallah A, Rocher C, Arachiche A, Tonaso L, Pereda-Loth V, Schiavinato S, Brucato N, Ricaut FX, Kusuma P, Sudoyo H, Ni S, Boland A, Deleuze JF, Beaujard P, Grange P, Adelaar S, Stoneking M, Rakotoarisoa JA, Radimilahy C, Letellier T.

Proc Natl Acad Sci U S A. 2017 Aug 8;114(32):E6498-E6506. doi: 10.1073/pnas.1704906114. Epub 2017 Jul 17.

6.

Genomic admixture tracks pulses of economic activity over 2,000 years in the Indian Ocean trading network.

Brucato N, Kusuma P, Beaujard P, Sudoyo H, Cox MP, Ricaut FX.

Sci Rep. 2017 Jun 7;7(1):2919. doi: 10.1038/s41598-017-03204-y.

7.

The last sea nomads of the Indonesian archipelago: genomic origins and dispersal.

Kusuma P, Brucato N, Cox MP, Letellier T, Manan A, Nuraini C, Grangé P, Sudoyo H, Ricaut FX.

Eur J Hum Genet. 2017 Aug;25(8):1004-1010. doi: 10.1038/ejhg.2017.88. Epub 2017 May 17.

8.

Study protocol to investigate the environmental and genetic aetiology of atopic dermatitis: the Indonesian Prospective Study of Atopic Dermatitis in Infants (ISADI).

Tanjung C, Rzehak P, Mansyur M, Munasir Z, Sudoyo H, Immanuel S, Irawan R, Reischl E, Demmelmair H, Koletzko B, Hadinegoro SR, Sjarif DR.

BMJ Open. 2017 Mar 3;7(3):e012475. doi: 10.1136/bmjopen-2016-012475.

9.

Placental weight ratio affects placental mRNA expression of insulin-like growth factor-I and long isoform of the leptin receptor in Plasmodium falciparuminfected pregnant women.

Oktavianthi S, Trianty L, Noviyanti R, Trimarsanto H, Sudoyo H, Malik SG.

Asia Pac J Clin Nutr. 2016 Dec;25(Suppl 1):S75-S82. doi: 10.6133/apjcn.122016.s12.

10.

Genomic analyses inform on migration events during the peopling of Eurasia.

Pagani L, Lawson DJ, Jagoda E, Mörseburg A, Eriksson A, Mitt M, Clemente F, Hudjashov G, DeGiorgio M, Saag L, Wall JD, Cardona A, Mägi R, Wilson Sayres MA, Kaewert S, Inchley C, Scheib CL, Järve M, Karmin M, Jacobs GS, Antao T, Iliescu FM, Kushniarevich A, Ayub Q, Tyler-Smith C, Xue Y, Yunusbayev B, Tambets K, Mallick CB, Saag L, Pocheshkhova E, Andriadze G, Muller C, Westaway MC, Lambert DM, Zoraqi G, Turdikulova S, Dalimova D, Sabitov Z, Sultana GNN, Lachance J, Tishkoff S, Momynaliev K, Isakova J, Damba LD, Gubina M, Nymadawa P, Evseeva I, Atramentova L, Utevska O, Ricaut FX, Brucato N, Sudoyo H, Letellier T, Cox MP, Barashkov NA, Skaro V, Mulahasanovic L, Primorac D, Sahakyan H, Mormina M, Eichstaedt CA, Lichman DV, Abdullah S, Chaubey G, Wee JTS, Mihailov E, Karunas A, Litvinov S, Khusainova R, Ekomasova N, Akhmetova V, Khidiyatova I, Marjanović D, Yepiskoposyan L, Behar DM, Balanovska E, Metspalu A, Derenko M, Malyarchuk B, Voevoda M, Fedorova SA, Osipova LP, Lahr MM, Gerbault P, Leavesley M, Migliano AB, Petraglia M, Balanovsky O, Khusnutdinova EK, Metspalu E, Thomas MG, Manica A, Nielsen R, Villems R, Willerslev E, Kivisild T, Metspalu M.

Nature. 2016 Oct 13;538(7624):238-242. doi: 10.1038/nature19792. Epub 2016 Sep 21.

11.

Malagasy Genetic Ancestry Comes from an Historical Malay Trading Post in Southeast Borneo.

Brucato N, Kusuma P, Cox MP, Pierron D, Purnomo GA, Adelaar A, Kivisild T, Letellier T, Sudoyo H, Ricaut FX.

Mol Biol Evol. 2016 Sep;33(9):2396-400. doi: 10.1093/molbev/msw117. Epub 2016 Jul 5.

12.

Small Traditional Human Communities Sustain Genomic Diversity over Microgeographic Scales despite Linguistic Isolation.

Cox MP, Hudjashov G, Sim A, Savina O, Karafet TM, Sudoyo H, Lansing JS.

Mol Biol Evol. 2016 Sep;33(9):2273-84. doi: 10.1093/molbev/msw099. Epub 2016 Jun 7.

13.

Contrasting Linguistic and Genetic Origins of the Asian Source Populations of Malagasy.

Kusuma P, Brucato N, Cox MP, Pierron D, Razafindrazaka H, Adelaar A, Sudoyo H, Letellier T, Ricaut FX.

Sci Rep. 2016 May 18;6:26066. doi: 10.1038/srep26066.

14.

A zoonotic human infection with simian malaria, Plasmodium knowlesi, in Central Kalimantan, Indonesia.

Setiadi W, Sudoyo H, Trimarsanto H, Sihite BA, Saragih RJ, Juliawaty R, Wangsamuda S, Asih PB, Syafruddin D.

Malar J. 2016 Apr 16;15:218. doi: 10.1186/s12936-016-1272-z.

15.

Randomized trial of primaquine hypnozoitocidal efficacy when administered with artemisinin-combined blood schizontocides for radical cure of Plasmodium vivax in Indonesia.

Nelwan EJ, Ekawati LL, Tjahjono B, Setiabudy R, Sutanto I, Chand K, Ekasari T, Djoko D, Basri H, Taylor WR, Duparc S, Subekti D, Elyazar I, Noviyanti R, Sudoyo H, Baird JK.

BMC Med. 2015 Dec 11;13:294. doi: 10.1186/s12916-015-0535-9.

16.

Allele frequency data for 15 autosomal STR loci in eight Indonesian subpopulations.

Venables SJ, Daniel R, Sarre SD, Soedarsono N, Sudoyo H, Suryadi H, van Oorschot RAH, Walsh SJ, Widodo PT, McNevin D.

Forensic Sci Int Genet. 2016 Jan;20:45-52. doi: 10.1016/j.fsigen.2015.09.014. Epub 2015 Oct 3.

PMID:
26517173
17.

The evolutionary origins of Southeast Asian Ovalocytosis.

Paquette AM, Harahap A, Laosombat V, Patnode JM, Satyagraha A, Sudoyo H, Thompson MK, Yusoff NM, Wilder JA.

Infect Genet Evol. 2015 Aug;34:153-9. doi: 10.1016/j.meegid.2015.06.002. Epub 2015 Jun 3.

PMID:
26047685
18.

Relaxed Observance of Traditional Marriage Rules Allows Social Connectivity without Loss of Genetic Diversity.

Guillot EG, Hazelton ML, Karafet TM, Lansing JS, Sudoyo H, Cox MP.

Mol Biol Evol. 2015 Sep;32(9):2254-62. doi: 10.1093/molbev/msv102. Epub 2015 May 12.

19.

Mitochondrial DNA and the Y chromosome suggest the settlement of Madagascar by Indonesian sea nomad populations.

Kusuma P, Cox MP, Pierron D, Razafindrazaka H, Brucato N, Tonasso L, Suryadi HL, Letellier T, Sudoyo H, Ricaut FX.

BMC Genomics. 2015 Mar 17;16:191. doi: 10.1186/s12864-015-1394-7.

20.

The role of apolipoprotein E polymorphism in improving dyslipidemia in obese adolescents following physical exercise and National Cholesterol Education Program Step II intervention.

Gultom LC, Sjarif DR, Sudoyo HA, Mansyur M, Hadinegoro SR, Immanuel S, Setiawati M.

J Pediatr Endocrinol Metab. 2015 May;28(5-6):597-603. doi: 10.1515/jpem-2014-0070.

PMID:
25870958
21.

Reconstructing Past Admixture Processes from Local Genomic Ancestry Using Wavelet Transformation.

Sanderson J, Sudoyo H, Karafet TM, Hammer MF, Cox MP.

Genetics. 2015 Jun;200(2):469-81. doi: 10.1534/genetics.115.176842. Epub 2015 Apr 7.

22.

Isolation, contact and social behavior shaped genetic diversity in West Timor.

Tumonggor MK, Karafet TM, Downey S, Lansing JS, Norquest P, Sudoyo H, Hammer MF, Cox MP.

J Hum Genet. 2014 Sep;59(9):494-503. doi: 10.1038/jhg.2014.62. Epub 2014 Jul 31.

23.

Toward male individualization with rapidly mutating y-chromosomal short tandem repeats.

Ballantyne KN, Ralf A, Aboukhalid R, Achakzai NM, Anjos MJ, Ayub Q, Balažic J, Ballantyne J, Ballard DJ, Berger B, Bobillo C, Bouabdellah M, Burri H, Capal T, Caratti S, Cárdenas J, Cartault F, Carvalho EF, Carvalho M, Cheng B, Coble MD, Comas D, Corach D, D'Amato ME, Davison S, de Knijff P, De Ungria MC, Decorte R, Dobosz T, Dupuy BM, Elmrghni S, Gliwiński M, Gomes SC, Grol L, Haas C, Hanson E, Henke J, Henke L, Herrera-Rodríguez F, Hill CR, Holmlund G, Honda K, Immel UD, Inokuchi S, Jobling MA, Kaddura M, Kim JS, Kim SH, Kim W, King TE, Klausriegler E, Kling D, Kovačević L, Kovatsi L, Krajewski P, Kravchenko S, Larmuseau MH, Lee EY, Lessig R, Livshits LA, Marjanović D, Minarik M, Mizuno N, Moreira H, Morling N, Mukherjee M, Munier P, Nagaraju J, Neuhuber F, Nie S, Nilasitsataporn P, Nishi T, Oh HH, Olofsson J, Onofri V, Palo JU, Pamjav H, Parson W, Petlach M, Phillips C, Ploski R, Prasad SP, Primorac D, Purnomo GA, Purps J, Rangel-Villalobos H, Rębała K, Rerkamnuaychoke B, Gonzalez DR, Robino C, Roewer L, Rosa A, Sajantila A, Sala A, Salvador JM, Sanz P, Schmitt C, Sharma AK, Silva DA, Shin KJ, Sijen T, Sirker M, Siváková D, Skaro V, Solano-Matamoros C, Souto L, Stenzl V, Sudoyo H, Syndercombe-Court D, Tagliabracci A, Taylor D, Tillmar A, Tsybovsky IS, Tyler-Smith C, van der Gaag KJ, Vanek D, Völgyi A, Ward D, Willemse P, Yap EP, Yong RY, Pajnič IZ, Kayser M.

Hum Mutat. 2014 Aug;35(8):1021-32. doi: 10.1002/humu.22599. Epub 2014 Jul 14.

24.

Improved phylogenetic resolution and rapid diversification of Y-chromosome haplogroup K-M526 in Southeast Asia.

Karafet TM, Mendez FL, Sudoyo H, Lansing JS, Hammer MF.

Eur J Hum Genet. 2015 Mar;23(3):369-73. doi: 10.1038/ejhg.2014.106. Epub 2014 Jun 4.

25.

Climate change influenced female population sizes through time across the Indonesian archipelago.

Guillot EG, Tumonggor MK, Lansing JS, Sudoyo H, Cox MP.

Hum Biol. 2013 Feb-Jun;85(1-3):135-52.

PMID:
24297223
26.

The Indonesian archipelago: an ancient genetic highway linking Asia and the Pacific.

Tumonggor MK, Karafet TM, Hallmark B, Lansing JS, Sudoyo H, Hammer MF, Cox MP.

J Hum Genet. 2013 Mar;58(3):165-73. doi: 10.1038/jhg.2012.154. Epub 2013 Jan 24.

PMID:
23344321
27.

Randomized, open-label trial of primaquine against vivax malaria relapse in Indonesia.

Sutanto I, Tjahjono B, Basri H, Taylor WR, Putri FA, Meilia RA, Setiabudy R, Nurleila S, Ekawati LL, Elyazar I, Farrar J, Sudoyo H, Baird JK.

Antimicrob Agents Chemother. 2013 Mar;57(3):1128-35. doi: 10.1128/AAC.01879-12. Epub 2012 Dec 17.

28.

Uncoupling protein 2 gene polymorphisms are associated with obesity.

Oktavianthi S, Trimarsanto H, Febinia CA, Suastika K, Saraswati MR, Dwipayana P, Arindrarto W, Sudoyo H, Malik SG.

Cardiovasc Diabetol. 2012 Apr 25;11:41. doi: 10.1186/1475-2840-11-41.

29.

A small cohort of Island Southeast Asian women founded Madagascar.

Cox MP, Nelson MG, Tumonggor MK, Ricaut FX, Sudoyo H.

Proc Biol Sci. 2012 Jul 22;279(1739):2761-8. doi: 10.1098/rspb.2012.0012. Epub 2012 Mar 21.

30.

Genetic continuity across a deeply divergent linguistic contact zone in North Maluku, Indonesia.

Wilder JA, Cox MP, Paquette AM, Alford R, Satyagraha AW, Harahap A, Sudoyo H.

BMC Genet. 2011 Nov 18;12:100. doi: 10.1186/1471-2156-12-100.

31.

Association of beta3-adrenergic receptor (ADRB3) Trp64Arg gene polymorphism with obesity and metabolic syndrome in the Balinese: a pilot study.

Malik SG, Saraswati MR, Suastika K, Trimarsanto H, Oktavianthi S, Sudoyo H.

BMC Res Notes. 2011 May 27;4:167. doi: 10.1186/1756-0500-4-167.

32.

What is the evidence of a role for host genetics in susceptibility to influenza A/H5N1?

Horby P, Sudoyo H, Viprakasit V, Fox A, Thai PQ, Yu H, Davila S, Hibberd M, Dunstan SJ, Monteerarat Y, Farrar JJ, Marzuki S, Hien NT.

Epidemiol Infect. 2010 Nov;138(11):1550-8. doi: 10.1017/S0950268810000518. Epub 2010 Mar 18.

33.

Major east-west division underlies Y chromosome stratification across Indonesia.

Karafet TM, Hallmark B, Cox MP, Sudoyo H, Downey S, Lansing JS, Hammer MF.

Mol Biol Evol. 2010 Aug;27(8):1833-44. doi: 10.1093/molbev/msq063. Epub 2010 Mar 5.

PMID:
20207712
34.

Autosomal and X-linked single nucleotide polymorphisms reveal a steep Asian-Melanesian ancestry cline in eastern Indonesia and a sex bias in admixture rates.

Cox MP, Karafet TM, Lansing JS, Sudoyo H, Hammer MF.

Proc Biol Sci. 2010 May 22;277(1687):1589-96. doi: 10.1098/rspb.2009.2041. Epub 2010 Jan 27.

35.

Mapping human genetic diversity in Asia.

HUGO Pan-Asian SNP Consortium, Abdulla MA, Ahmed I, Assawamakin A, Bhak J, Brahmachari SK, Calacal GC, Chaurasia A, Chen CH, Chen J, Chen YT, Chu J, Cutiongco-de la Paz EM, De Ungria MC, Delfin FC, Edo J, Fuchareon S, Ghang H, Gojobori T, Han J, Ho SF, Hoh BP, Huang W, Inoko H, Jha P, Jinam TA, Jin L, Jung J, Kangwanpong D, Kampuansai J, Kennedy GC, Khurana P, Kim HL, Kim K, Kim S, Kim WY, Kimm K, Kimura R, Koike T, Kulawonganunchai S, Kumar V, Lai PS, Lee JY, Lee S, Liu ET, Majumder PP, Mandapati KK, Marzuki S, Mitchell W, Mukerji M, Naritomi K, Ngamphiw C, Niikawa N, Nishida N, Oh B, Oh S, Ohashi J, Oka A, Ong R, Padilla CD, Palittapongarnpim P, Perdigon HB, Phipps ME, Png E, Sakaki Y, Salvador JM, Sandraling Y, Scaria V, Seielstad M, Sidek MR, Sinha A, Srikummool M, Sudoyo H, Sugano S, Suryadi H, Suzuki Y, Tabbada KA, Tan A, Tokunaga K, Tongsima S, Villamor LP, Wang E, Wang Y, Wang H, Wu JY, Xiao H, Xu S, Yang JO, Shugart YY, Yoo HS, Yuan W, Zhao G, Zilfalil BA; Indian Genome Variation Consortium.

Science. 2009 Dec 11;326(5959):1541-5. doi: 10.1126/science.1177074.

36.

Genetic structure of a unique admixed population: implications for medical research.

Patterson N, Petersen DC, van der Ross RE, Sudoyo H, Glashoff RH, Marzuki S, Reich D, Hayes VM.

Hum Mol Genet. 2010 Feb 1;19(3):411-9. doi: 10.1093/hmg/ddp505. Epub 2009 Nov 5.

PMID:
19892779
37.

Genetic admixture history of Eastern Indonesia as revealed by Y-chromosome and mitochondrial DNA analysis.

Mona S, Grunz KE, Brauer S, Pakendorf B, Castrì L, Sudoyo H, Marzuki S, Barnes RH, Schmidtke J, Stoneking M, Kayser M.

Mol Biol Evol. 2009 Aug;26(8):1865-77. doi: 10.1093/molbev/msp097. Epub 2009 May 4. Erratum in: Mol Biol Evol. 2011 Aug;28(8):2419-20.

PMID:
19414523
38.

Molecular population genetics of SLC4A1 and Southeast Asian ovalocytosis.

Wilder JA, Stone JA, Preston EG, Finn LE, Ratcliffe HL, Sudoyo H.

J Hum Genet. 2009 Mar;54(3):182-7. doi: 10.1038/jhg.2009.12. Epub 2009 Feb 20.

PMID:
19229254
39.

DNA analysis in perpetrator identification of terrorism-related disaster: suicide bombing of the Australian Embassy in Jakarta 2004.

Sudoyo H, Widodo PT, Suryadi H, Lie YS, Safari D, Widjajanto A, Kadarmo DA, Hidayat S, Marzuki S.

Forensic Sci Int Genet. 2008 Jun;2(3):231-7. doi: 10.1016/j.fsigen.2007.12.007. Epub 2008 Feb 12.

PMID:
19083826
40.

Male dominance rarely skews the frequency distribution of Y chromosome haplotypes in human populations.

Lansing JS, Watkins JC, Hallmark B, Cox MP, Karafet TM, Sudoyo H, Hammer MF.

Proc Natl Acad Sci U S A. 2008 Aug 19;105(33):11645-50. doi: 10.1073/pnas.0710158105. Epub 2008 Aug 14.

41.

A Polynesian motif on the Y chromosome: population structure in remote Oceania.

Cox MP, Redd AJ, Karafet TM, Ponder CA, Lansing S, Sudoyo H, Hammer MF.

Hum Biol. 2007 Oct;79(5):525-35.

PMID:
18478968
42.

Genetic study of hepatitis B virus in Indonesia reveals a new subgenotype of genotype B in east Nusa Tenggara.

Nurainy N, Muljono DH, Sudoyo H, Marzuki S.

Arch Virol. 2008;153(6):1057-65. doi: 10.1007/s00705-008-0092-z. Epub 2008 May 8. Erratum in: Arch Virol. 2008;153(8):1631-2.

PMID:
18463783
43.

Coevolution of languages and genes on the island of Sumba, eastern Indonesia.

Lansing JS, Cox MP, Downey SS, Gabler BM, Hallmark B, Karafet TM, Norquest P, Schoenfelder JW, Sudoyo H, Watkins JC, Hammer MF.

Proc Natl Acad Sci U S A. 2007 Oct 9;104(41):16022-6. Epub 2007 Oct 3.

44.

Patterns of Y-chromosome diversity intersect with the Trans-New Guinea hypothesis.

Mona S, Tommaseo-Ponzetta M, Brauer S, Sudoyo H, Marzuki S, Kayser M.

Mol Biol Evol. 2007 Nov;24(11):2546-55. Epub 2007 Sep 10.

PMID:
17846104
45.

Prevalence of the mitochondrial DNA A1555G mutation in sensorineural deafness patients in island Southeast Asia.

Malik SG, Pieter N, Sudoyo H, Kadir A, Marzuki S.

J Hum Genet. 2003;48(9):480-3. Epub 2003 Sep 3.

PMID:
12955586
46.

Mitochondrial genome and susceptibility to diabetes mellitus.

Sudoyo H, Suryadi H, Sitorus N, Soegondo S, Pranoto A, Marzuki S.

Adv Exp Med Biol. 2003;531:19-36. Review. No abstract available.

PMID:
12916778
47.

Human genome diversity and disease on the island Southeast Asia.

Marzuki S, Sudoyo H, Suryadi H, Setianingsih I, Pramoonjago P.

Adv Exp Med Biol. 2003;531:3-18. Review. No abstract available.

PMID:
12916777
48.

Nonsyndromic sensorineural deafness associated with the A1555G mutation in the mitochondrial small subunit ribosomal RNA in a Balinese family.

Malik S, Sudoyo H, Sasmono T, Winata S, Arhya IN, Pramoonjago P, Sudana W, Marzuki S.

J Hum Genet. 2003;48(3):119-24.

PMID:
12624722
49.

Asian-specific mtDNA backgrounds associated with the primary G11778A mutation of Leber's hereditary optic neuropathy.

Sudoyo H, Suryadi H, Lertrit P, Pramoonjago P, Lyrawati D, Marzuki S.

J Hum Genet. 2002;47(11):594-604.

PMID:
12436196
50.

Nuclear mitochondrial interplay in the modulation of the homopolymeric tract length heteroplasmy in the control (D-loop) region of the mitochondrial DNA.

Malik S, Sudoyo H, Pramoonjago P, Suryadi H, Sukarna T, Njunting M, Sahiratmadja E, Marzuki S.

Hum Genet. 2002 May;110(5):402-11. Epub 2002 Apr 4.

PMID:
12073009

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