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Items: 18

1.

Co-transcriptional Loading of RNA Export Factors Shapes the Human Transcriptome.

Viphakone N, Sudbery I, Griffith L, Heath CG, Sims D, Wilson SA.

Mol Cell. 2019 Jul 25;75(2):310-323.e8. doi: 10.1016/j.molcel.2019.04.034. Epub 2019 May 16.

2.

Proteins that physically interact with the phosphatase Cdc14 in Candida albicans have diverse roles in the cell cycle.

Kaneva IN, Sudbery IM, Dickman MJ, Sudbery PE.

Sci Rep. 2019 Apr 18;9(1):6258. doi: 10.1038/s41598-019-42530-1.

3.

Alevin efficiently estimates accurate gene abundances from dscRNA-seq data.

Srivastava A, Malik L, Smith T, Sudbery I, Patro R.

Genome Biol. 2019 Mar 27;20(1):65. doi: 10.1186/s13059-019-1670-y.

4.

The m6A-methylase complex recruits TREX and regulates mRNA export.

Lesbirel S, Viphakone N, Parker M, Parker J, Heath C, Sudbery I, Wilson SA.

Sci Rep. 2018 Sep 14;8(1):13827. doi: 10.1038/s41598-018-32310-8.

5.

UCHL3 Regulates Topoisomerase-Induced Chromosomal Break Repair by Controlling TDP1 Proteostasis.

Liao C, Beveridge R, Hudson JJR, Parker JD, Chiang SC, Ray S, Ashour ME, Sudbery I, Dickman MJ, El-Khamisy SF.

Cell Rep. 2018 Jun 12;23(11):3352-3365. doi: 10.1016/j.celrep.2018.05.033.

6.

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy.

Smith T, Heger A, Sudbery I.

Genome Res. 2017 Mar;27(3):491-499. doi: 10.1101/gr.209601.116. Epub 2017 Jan 18.

7.

Cell cycle-independent phospho-regulation of Fkh2 during hyphal growth regulates Candida albicans pathogenesis.

Greig JA, Sudbery IM, Richardson JP, Naglik JR, Wang Y, Sudbery PE.

PLoS Pathog. 2015 Jan 24;11(1):e1004630. doi: 10.1371/journal.ppat.1004630. eCollection 2015 Jan.

8.

Identification of a candidate prognostic gene signature by transcriptome analysis of matched pre- and post-treatment prostatic biopsies from patients with advanced prostate cancer.

Rajan P, Stockley J, Sudbery IM, Fleming JT, Hedley A, Kalna G, Sims D, Ponting CP, Heger A, Robson CN, McMenemin RM, Pedley ID, Leung HY.

BMC Cancer. 2014 Dec 18;14:977. doi: 10.1186/1471-2407-14-977.

9.

Phosphoregulation of Nap1 plays a role in septin ring dynamics and morphogenesis in Candida albicans.

Huang ZX, Zhao P, Zeng GS, Wang YM, Sudbery I, Wang Y.

MBio. 2014 Feb 4;5(1):e00915-13. doi: 10.1128/mBio.00915-13.

10.

Sequencing depth and coverage: key considerations in genomic analyses.

Sims D, Sudbery I, Ilott NE, Heger A, Ponting CP.

Nat Rev Genet. 2014 Feb;15(2):121-32. doi: 10.1038/nrg3642. Review.

PMID:
24434847
11.

CGAT: computational genomics analysis toolkit.

Sims D, Ilott NE, Sansom SN, Sudbery IM, Johnson JS, Fawcett KA, Berlanga-Taylor AJ, Luna-Valero S, Ponting CP, Heger A.

Bioinformatics. 2014 May 1;30(9):1290-1. doi: 10.1093/bioinformatics/btt756. Epub 2014 Jan 5.

12.

Next-generation sequencing of advanced prostate cancer treated with androgen-deprivation therapy.

Rajan P, Sudbery IM, Villasevil ME, Mui E, Fleming J, Davis M, Ahmad I, Edwards J, Sansom OJ, Sims D, Ponting CP, Heger A, McMenemin RM, Pedley ID, Leung HY.

Eur Urol. 2014 Jul;66(1):32-9. doi: 10.1016/j.eururo.2013.08.011. Epub 2013 Aug 14.

13.

KDM2B links the Polycomb Repressive Complex 1 (PRC1) to recognition of CpG islands.

Farcas AM, Blackledge NP, Sudbery I, Long HK, McGouran JF, Rose NR, Lee S, Sims D, Cerase A, Sheahan TW, Koseki H, Brockdorff N, Ponting CP, Kessler BM, Klose RJ.

Elife. 2012 Dec 18;1:e00205. doi: 10.7554/eLife.00205.

14.

High-throughput analysis of candidate imprinted genes and allele-specific gene expression in the human term placenta.

Daelemans C, Ritchie ME, Smits G, Abu-Amero S, Sudbery IM, Forrest MS, Campino S, Clark TG, Stanier P, Kwiatkowski D, Deloukas P, Dermitzakis ET, Tavaré S, Moore GE, Dunham I.

BMC Genet. 2010 Apr 19;11:25. doi: 10.1186/1471-2156-11-25.

15.

Systematic analysis of off-target effects in an RNAi screen reveals microRNAs affecting sensitivity to TRAIL-induced apoptosis.

Sudbery I, Enright AJ, Fraser AG, Dunham I.

BMC Genomics. 2010 Mar 15;11:175. doi: 10.1186/1471-2164-11-175.

16.

Deep short-read sequencing of chromosome 17 from the mouse strains A/J and CAST/Ei identifies significant germline variation and candidate genes that regulate liver triglyceride levels.

Sudbery I, Stalker J, Simpson JT, Keane T, Rust AG, Hurles ME, Walter K, Lynch D, Teboul L, Brown SD, Li H, Ning Z, Nadeau JH, Croniger CM, Durbin R, Adams DJ.

Genome Biol. 2009;10(10):R112. doi: 10.1186/gb-2009-10-10-r112. Epub 2009 Oct 13.

17.

Next-generation sequencing of vertebrate experimental organisms.

Turner DJ, Keane TM, Sudbery I, Adams DJ.

Mamm Genome. 2009 Jun;20(6):327-38. doi: 10.1007/s00335-009-9187-4. Epub 2009 May 19. Review.

18.

Apoptosis induced by environmental stresses and amphotericin B in Candida albicans.

Phillips AJ, Sudbery I, Ramsdale M.

Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14327-32. Epub 2003 Nov 17.

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