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Items: 1 to 50 of 111

1.

Ancient DNA analysis of food remains in human dental calculus from the Edo period, Japan.

Sawafuji R, Saso A, Suda W, Hattori M, Ueda S.

PLoS One. 2020 Mar 4;15(3):e0226654. doi: 10.1371/journal.pone.0226654. eCollection 2020.

2.

Complete Genome Sequence of Akkermansia muciniphila JCM 30893, Isolated from Feces of a Healthy Japanese Male.

Ogata Y, Sakamoto M, Ohkuma M, Hattori M, Suda W.

Microbiol Resour Announc. 2020 Feb 13;9(7). pii: e01543-19. doi: 10.1128/MRA.01543-19.

3.

5-Aminosalicylic acid intolerance is associated with a risk of adverse clinical outcomes and dysbiosis in patients with ulcerative colitis.

Mizuno S, Ono K, Mikami Y, Naganuma M, Fukuda T, Minami K, Masaoka T, Terada S, Yoshida T, Saigusa K, Hirahara N, Miyata H, Suda W, Hattori M, Kanai T.

Intest Res. 2020 Jan;18(1):69-78. doi: 10.5217/ir.2019.00084. Epub 2020 Jan 30.

4.

Altered microbiota composition reflects enhanced communication in 15q11-13 CNV mice.

Septyaningtrias DE, Lin CW, Ouchida R, Nakai N, Suda W, Hattori M, Morita H, Honda K, Tamada K, Takumi T.

Neurosci Res. 2019 Dec 18. pii: S0168-0102(19)30671-6. doi: 10.1016/j.neures.2019.12.010. [Epub ahead of print]

PMID:
31863791
5.

Gastric acid inhibitor aggravates indomethacin-induced small intestinal injury via reducing Lactobacillus johnsonii.

Nadatani Y, Watanabe T, Suda W, Nakata A, Matsumoto Y, Kosaka S, Higashimori A, Otani K, Hosomi S, Tanaka F, Nagami Y, Kamata N, Taira K, Yamagami H, Tanigawa T, Hattori M, Fujiwara Y.

Sci Rep. 2019 Nov 25;9(1):17490. doi: 10.1038/s41598-019-53559-7.

6.

Alistipes communis sp. nov., Alistipes dispar sp. nov. and Alistipes onderdonkii subsp. vulgaris subsp. nov., isolated from human faeces, and creation of Alistipes onderdonkii subsp. onderdonkii subsp. nov.

Sakamoto M, Ikeyama N, Ogata Y, Suda W, Iino T, Hattori M, Ohkuma M.

Int J Syst Evol Microbiol. 2020 Jan;70(1):473-480. doi: 10.1099/ijsem.0.003778.

PMID:
31633480
7.

Effects of storage temperature, storage time, and Cary-Blair transport medium on the stability of the gut microbiota.

Nagata N, Tohya M, Takeuchi F, Suda W, Nishijima S, Ohsugi M, Ueki K, Tsujimoto T, Nakamura T, Kawai T, Miyoshi-Akiyama T, Uemura N, Hattori M.

Drug Discov Ther. 2019 Nov 14;13(5):256-260. doi: 10.5582/ddt.2019.01071. Epub 2019 Oct 11.

8.

Draft Genome Sequence of Sporolactobacillus inulinus NBRC 111894, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage.

Chiou TY, Suda W, Oshima K, Hattori M, Matsuzaki C, Yamamoto K, Takahashi T.

Microbiol Resour Announc. 2019 Oct 10;8(41). pii: e00751-19. doi: 10.1128/MRA.00751-19.

9.

Mucin O-glycans facilitate symbiosynthesis to maintain gut immune homeostasis.

Yamada T, Hino S, Iijima H, Genda T, Aoki R, Nagata R, Han KH, Hirota M, Kinashi Y, Oguchi H, Suda W, Furusawa Y, Fujimura Y, Kunisawa J, Hattori M, Fukushima M, Morita T, Hase K.

EBioMedicine. 2019 Oct;48:513-525. doi: 10.1016/j.ebiom.2019.09.008. Epub 2019 Sep 11.

10.

Japanese subgingival microbiota in health vs disease and their roles in predicted functions associated with periodontitis.

Ikeda E, Shiba T, Ikeda Y, Suda W, Nakasato A, Takeuchi Y, Azuma M, Hattori M, Izumi Y.

Odontology. 2020 Apr;108(2):280-291. doi: 10.1007/s10266-019-00452-4. Epub 2019 Sep 9.

PMID:
31502122
11.

Repeated selective enrichment process of sediment microbiota occurred in sea cucumber guts.

Yamazaki Y, Sakai Y, Mino S, Suda W, Hattori M, Meirelles PM, Thompson F, Sawabe T.

Environ Microbiol Rep. 2019 Dec;11(6):797-807. doi: 10.1111/1758-2229.12791. Epub 2019 Oct 2.

PMID:
31469474
12.

Long-read metagenomic exploration of extrachromosomal mobile genetic elements in the human gut.

Suzuki Y, Nishijima S, Furuta Y, Yoshimura J, Suda W, Oshima K, Hattori M, Morishita S.

Microbiome. 2019 Aug 27;7(1):119. doi: 10.1186/s40168-019-0737-z.

13.

Comparative Characterization of Bacterial Communities in Moss-Covered and Unvegetated Volcanic Deposits of Mount Merapi, Indonesia.

Lathifah AN, Guo Y, Sakagami N, Suda W, Higuchi M, Nishizawa T, Prijambada ID, Ohta H.

Microbes Environ. 2019 Sep 25;34(3):268-277. doi: 10.1264/jsme2.ME19041. Epub 2019 Jul 20.

14.

Effects of bowel preparation on the human gut microbiome and metabolome.

Nagata N, Tohya M, Fukuda S, Suda W, Nishijima S, Takeuchi F, Ohsugi M, Tsujimoto T, Nakamura T, Shimomura A, Yanagisawa N, Hisada Y, Watanabe K, Imbe K, Akiyama J, Mizokami M, Miyoshi-Akiyama T, Uemura N, Hattori M.

Sci Rep. 2019 Mar 11;9(1):4042. doi: 10.1038/s41598-019-40182-9.

15.

Complete Genome Sequence of Phascolarctobacterium faecium JCM 30894, a Succinate-Utilizing Bacterium Isolated from Human Feces.

Ogata Y, Suda W, Ikeyama N, Hattori M, Ohkuma M, Sakamoto M.

Microbiol Resour Announc. 2019 Jan 17;8(3). pii: e01487-18. doi: 10.1128/MRA.01487-18. eCollection 2019 Jan.

16.

Deep sequencing reveals specific bacterial signatures in the subgingival microbiota of healthy subjects.

Ikeda E, Shiba T, Ikeda Y, Suda W, Nakasato A, Takeuchi Y, Azuma M, Hattori M, Izumi Y.

Clin Oral Investig. 2019 Mar;23(3):1489-1493. doi: 10.1007/s00784-019-02805-3. Epub 2019 Jan 24.

PMID:
30680442
17.

A defined commensal consortium elicits CD8 T cells and anti-cancer immunity.

Tanoue T, Morita S, Plichta DR, Skelly AN, Suda W, Sugiura Y, Narushima S, Vlamakis H, Motoo I, Sugita K, Shiota A, Takeshita K, Yasuma-Mitobe K, Riethmacher D, Kaisho T, Norman JM, Mucida D, Suematsu M, Yaguchi T, Bucci V, Inoue T, Kawakami Y, Olle B, Roberts B, Hattori M, Xavier RJ, Atarashi K, Honda K.

Nature. 2019 Jan;565(7741):600-605. doi: 10.1038/s41586-019-0878-z. Epub 2019 Jan 23.

PMID:
30675064
18.

Influence of Porphyromonas gingivalis in gut microbiota of streptozotocin-induced diabetic mice.

Ohtsu A, Takeuchi Y, Katagiri S, Suda W, Maekawa S, Shiba T, Komazaki R, Udagawa S, Sasaki N, Hattori M, Izumi Y.

Oral Dis. 2019 Apr;25(3):868-880. doi: 10.1111/odi.13044. Epub 2019 Feb 10.

PMID:
30667148
19.

Gut pathobionts underlie intestinal barrier dysfunction and liver T helper 17 cell immune response in primary sclerosing cholangitis.

Nakamoto N, Sasaki N, Aoki R, Miyamoto K, Suda W, Teratani T, Suzuki T, Koda Y, Chu PS, Taniki N, Yamaguchi A, Kanamori M, Kamada N, Hattori M, Ashida H, Sakamoto M, Atarashi K, Narushima S, Yoshimura A, Honda K, Sato T, Kanai T.

Nat Microbiol. 2019 Mar;4(3):492-503. doi: 10.1038/s41564-018-0333-1. Epub 2019 Jan 14.

PMID:
30643240
20.

Draft Genome Sequence of Lactobacillus kosoi NBRC 113063, Isolated from Kôso, a Japanese Sugar-Vegetable Fermented Beverage.

Chiou TY, Suda W, Oshima K, Hattori M, Matsuzaki C, Yamamoto K, Takahashi T.

Microbiol Resour Announc. 2018 Nov 21;7(20). pii: e01173-18. doi: 10.1128/MRA.01173-18. eCollection 2018 Nov.

21.

Fecal microbiota transplantation with frozen capsules for a patient with refractory acute gut graft-versus-host disease.

Kaito S, Toya T, Yoshifuji K, Kurosawa S, Inamoto K, Takeshita K, Suda W, Kakihana K, Honda K, Hattori M, Ohashi K.

Blood Adv. 2018 Nov 27;2(22):3097-3101. doi: 10.1182/bloodadvances.2018024968. No abstract available.

22.

Gut microbiota-derived D-serine protects against acute kidney injury.

Nakade Y, Iwata Y, Furuichi K, Mita M, Hamase K, Konno R, Miyake T, Sakai N, Kitajima S, Toyama T, Shinozaki Y, Sagara A, Miyagawa T, Hara A, Shimizu M, Kamikawa Y, Sato K, Oshima M, Yoneda-Nakagawa S, Yamamura Y, Kaneko S, Miyamoto T, Katane M, Homma H, Morita H, Suda W, Hattori M, Wada T.

JCI Insight. 2018 Oct 18;3(20). pii: 97957. doi: 10.1172/jci.insight.97957.

23.

[Analysis of human microbiome using NGS.]

Suda W, Ogata Y, Nishijima S.

Clin Calcium. 2018;28(9):1274-1281. doi: CliCa180912741281. Review. Japanese.

PMID:
30146515
24.

Organic electrochromic timer for enzymatic skin patches.

Kai H, Suda W, Yoshida S, Nishizawa M.

Biosens Bioelectron. 2019 Jan 1;123:108-113. doi: 10.1016/j.bios.2018.07.013. Epub 2018 Jul 10.

PMID:
30029842
25.

The effect of fecal microbiota transplantation on psychiatric symptoms among patients with irritable bowel syndrome, functional diarrhea and functional constipation: An open-label observational study.

Kurokawa S, Kishimoto T, Mizuno S, Masaoka T, Naganuma M, Liang KC, Kitazawa M, Nakashima M, Shindo C, Suda W, Hattori M, Kanai T, Mimura M.

J Affect Disord. 2018 Aug 1;235:506-512. doi: 10.1016/j.jad.2018.04.038. Epub 2018 Apr 12.

PMID:
29684865
26.

Computer-guided design of optimal microbial consortia for immune system modulation.

Stein RR, Tanoue T, Szabady RL, Bhattarai SK, Olle B, Norman JM, Suda W, Oshima K, Hattori M, Gerber GK, Sander C, Honda K, Bucci V.

Elife. 2018 Apr 17;7. pii: e30916. doi: 10.7554/eLife.30916.

27.

Dysbiosis of the salivary microbiota in pediatric-onset primary sclerosing cholangitis and its potential as a biomarker.

Iwasawa K, Suda W, Tsunoda T, Oikawa-Kawamoto M, Umetsu S, Takayasu L, Inui A, Fujisawa T, Morita H, Sogo T, Hattori M.

Sci Rep. 2018 Apr 3;8(1):5480. doi: 10.1038/s41598-018-23870-w.

28.

Fecal microbiota transplantation for recurrent Clostridium difficile infection in a patient with ulcerative colitis.

Nanki K, Mizuno S, Matsuoka K, Ono K, Sugimoto S, Kiyohara H, Arai M, Nakashima M, Takeshita K, Saigusa K, Senoh M, Fukuda T, Naganuma M, Kato H, Suda W, Hattori M, Kanai T.

Intest Res. 2018 Jan;16(1):142-146. doi: 10.5217/ir.2018.16.1.142. Epub 2018 Jan 18.

29.

Lactobacillus kosoi sp. nov., a fructophilic species isolated from kôso, a Japanese sugar-vegetable fermented beverage.

Chiou TY, Suda W, Oshima K, Hattori M, Matsuzaki C, Yamamoto K, Takahashi T.

Antonie Van Leeuwenhoek. 2018 Jul;111(7):1149-1156. doi: 10.1007/s10482-018-1019-7. Epub 2018 Jan 20.

PMID:
29353462
30.

Correction: Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.

Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T.

PLoS One. 2017 Dec 7;12(12):e0189555. doi: 10.1371/journal.pone.0189555. eCollection 2017.

31.

Efficacy of Indigo Naturalis in a Multicenter Randomized Controlled Trial of Patients With Ulcerative Colitis.

Naganuma M, Sugimoto S, Mitsuyama K, Kobayashi T, Yoshimura N, Ohi H, Tanaka S, Andoh A, Ohmiya N, Saigusa K, Yamamoto T, Morohoshi Y, Ichikawa H, Matsuoka K, Hisamatsu T, Watanabe K, Mizuno S, Suda W, Hattori M, Fukuda S, Hirayama A, Abe T, Watanabe M, Hibi T, Suzuki Y, Kanai T; INDIGO Study Group.

Gastroenterology. 2018 Mar;154(4):935-947. doi: 10.1053/j.gastro.2017.11.024. Epub 2017 Nov 22.

PMID:
29174928
32.

Corrigendum to "Vibrio ishigakensis sp. nov., in Halioticoli clade isolated from seawater in Okinawa coral reef area, Japan" [Syst. Appl. Microbiol. 39 (5) (2016) 330-335].

Gao F, Al-Saari N, Rohul Amin AKM, Sato K, Mino S, Suda W, Oshima K, Hattori M, Ohkuma M, Hargreaves PI, Meirelles PM, Thompson FL, Thompson C, Gomez-Gil B, Sawabe T, Sawabe T.

Syst Appl Microbiol. 2017 Dec;40(8):516. doi: 10.1016/j.syapm.2017.10.002. No abstract available.

PMID:
29100655
33.

Commensal Lactobacillus Controls Immune Tolerance during Acute Liver Injury in Mice.

Nakamoto N, Amiya T, Aoki R, Taniki N, Koda Y, Miyamoto K, Teratani T, Suzuki T, Chiba S, Chu PS, Hayashi A, Yamaguchi A, Shiba S, Miyake R, Katayama T, Suda W, Mikami Y, Kamada N, Ebinuma H, Saito H, Hattori M, Kanai T.

Cell Rep. 2017 Oct 31;21(5):1215-1226. doi: 10.1016/j.celrep.2017.10.022.

34.

Ectopic colonization of oral bacteria in the intestine drives TH1 cell induction and inflammation.

Atarashi K, Suda W, Luo C, Kawaguchi T, Motoo I, Narushima S, Kiguchi Y, Yasuma K, Watanabe E, Tanoue T, Thaiss CA, Sato M, Toyooka K, Said HS, Yamagami H, Rice SA, Gevers D, Johnson RC, Segre JA, Chen K, Kolls JK, Elinav E, Morita H, Xavier RJ, Hattori M, Honda K.

Science. 2017 Oct 20;358(6361):359-365. doi: 10.1126/science.aan4526.

35.

Microbiome profile of the amniotic fluid as a predictive biomarker of perinatal outcome.

Urushiyama D, Suda W, Ohnishi E, Araki R, Kiyoshima C, Kurakazu M, Sanui A, Yotsumoto F, Murata M, Nabeshima K, Yasunaga S, Saito S, Nomiyama M, Hattori M, Miyamoto S, Hata K.

Sci Rep. 2017 Sep 22;7(1):12171. doi: 10.1038/s41598-017-11699-8.

36.

Gallbladder-derived surfactant protein D regulates gut commensal bacteria for maintaining intestinal homeostasis.

Sarashina-Kida H, Negishi H, Nishio J, Suda W, Nakajima Y, Yasui-Kato M, Iwaisako K, Kang S, Endo N, Yanai H, Asagiri M, Kida H, Hattori M, Kumanogoh A, Taniguchi T.

Proc Natl Acad Sci U S A. 2017 Sep 19;114(38):10178-10183. doi: 10.1073/pnas.1712837114. Epub 2017 Sep 6.

37.

Aging-related changes in the diversity of women's skin microbiomes associated with oral bacteria.

Shibagaki N, Suda W, Clavaud C, Bastien P, Takayasu L, Iioka E, Kurokawa R, Yamashita N, Hattori Y, Shindo C, Breton L, Hattori M.

Sci Rep. 2017 Sep 5;7(1):10567. doi: 10.1038/s41598-017-10834-9.

38.

Intestinal Dysbiosis and Biotin Deprivation Induce Alopecia through Overgrowth of Lactobacillus murinus in Mice.

Hayashi A, Mikami Y, Miyamoto K, Kamada N, Sato T, Mizuno S, Naganuma M, Teratani T, Aoki R, Fukuda S, Suda W, Hattori M, Amagai M, Ohyama M, Kanai T.

Cell Rep. 2017 Aug 15;20(7):1513-1524. doi: 10.1016/j.celrep.2017.07.057.

39.

A 3-dimensional mathematical model of microbial proliferation that generates the characteristic cumulative relative abundance distributions in gut microbiomes.

Takayasu L, Suda W, Watanabe E, Fukuda S, Takanashi K, Ohno H, Takayasu M, Takayasu H, Hattori M.

PLoS One. 2017 Aug 8;12(8):e0180863. doi: 10.1371/journal.pone.0180863. eCollection 2017.

40.

Clinical impact of pre-transplant gut microbial diversity on outcomes of allogeneic hematopoietic stem cell transplantation.

Doki N, Suyama M, Sasajima S, Ota J, Igarashi A, Mimura I, Morita H, Fujioka Y, Sugiyama D, Nishikawa H, Shimazu Y, Suda W, Takeshita K, Atarashi K, Hattori M, Sato E, Watakabe-Inamoto K, Yoshioka K, Najima Y, Kobayashi T, Kakihana K, Takahashi N, Sakamaki H, Honda K, Ohashi K.

Ann Hematol. 2017 Sep;96(9):1517-1523. doi: 10.1007/s00277-017-3069-8. Epub 2017 Jul 21.

PMID:
28733895
41.

Vibrio aphrogenes sp. nov., in the Rumoiensis clade isolated from a seaweed.

Tanaka M, Endo S, Kotake F, Al-Saari N, Amin AKMR, Feng G, Mino S, Doi H, Ogura Y, Hayashi T, Suda W, Hattori M, Yumoto I, Sawabe T, Sawabe T, Araki T.

PLoS One. 2017 Jun 29;12(6):e0180053. doi: 10.1371/journal.pone.0180053. eCollection 2017. Erratum in: PLoS One. 2017 Dec 7;12 (12 ):e0189555.

42.

Bifidobacterium-Rich Fecal Donor May Be a Positive Predictor for Successful Fecal Microbiota Transplantation in Patients with Irritable Bowel Syndrome.

Mizuno S, Masaoka T, Naganuma M, Kishimoto T, Kitazawa M, Kurokawa S, Nakashima M, Takeshita K, Suda W, Mimura M, Hattori M, Kanai T.

Digestion. 2017;96(1):29-38. doi: 10.1159/000471919. Epub 2017 Jun 21.

43.

Intrinsically Stretchable Electrochromic Display by a Composite Film of Poly(3,4-ethylenedioxythiophene) and Polyurethane.

Kai H, Suda W, Ogawa Y, Nagamine K, Nishizawa M.

ACS Appl Mater Interfaces. 2017 Jun 14;9(23):19513-19518. doi: 10.1021/acsami.7b03124. Epub 2017 May 25.

PMID:
28530794
44.

Circadian oscillations of microbial and functional composition in the human salivary microbiome.

Takayasu L, Suda W, Takanashi K, Iioka E, Kurokawa R, Shindo C, Hattori Y, Yamashita N, Nishijima S, Oshima K, Hattori M.

DNA Res. 2017 Jun 1;24(3):261-270. doi: 10.1093/dnares/dsx001.

45.

Dysbiosis and compositional alterations with aging in the gut microbiota of patients with heart failure.

Kamo T, Akazawa H, Suda W, Saga-Kamo A, Shimizu Y, Yagi H, Liu Q, Nomura S, Naito AT, Takeda N, Harada M, Toko H, Kumagai H, Ikeda Y, Takimoto E, Suzuki JI, Honda K, Morita H, Hattori M, Komuro I.

PLoS One. 2017 Mar 22;12(3):e0174099. doi: 10.1371/journal.pone.0174099. eCollection 2017.

46.

A proliferative probiotic Bifidobacterium strain in the gut ameliorates progression of metabolic disorders via microbiota modulation and acetate elevation.

Aoki R, Kamikado K, Suda W, Takii H, Mikami Y, Suganuma N, Hattori M, Koga Y.

Sci Rep. 2017 Mar 2;7:43522. doi: 10.1038/srep43522.

47.

Single fecal microbiota transplantation failed to change intestinal microbiota and had limited effectiveness against ulcerative colitis in Japanese patients.

Mizuno S, Nanki K, Matsuoka K, Saigusa K, Ono K, Arai M, Sugimoto S, Kiyohara H, Nakashima M, Takeshita K, Naganuma M, Suda W, Hattori M, Kanai T.

Intest Res. 2017 Jan;15(1):68-74. doi: 10.5217/ir.2017.15.1.68. Epub 2017 Jan 31.

48.

Confounding effects of microbiome on the susceptibility of TNFSF15 to Crohn's disease in the Ryukyu Islands.

Nakagome S, Chinen H, Iraha A, Hokama A, Takeyama Y, Sakisaka S, Matsui T, Kidd JR, Kidd KK, Said HS, Suda W, Morita H, Hattori M, Hanihara T, Kimura R, Ishida H, Fujita J, Kinjo F, Mano S, Oota H.

Hum Genet. 2017 Apr;136(4):387-397. doi: 10.1007/s00439-017-1764-0. Epub 2017 Feb 14.

PMID:
28197769
49.

Changes in the bacterial community in the fermentation process of kôso, a Japanese sugar-vegetable fermented beverage.

Chiou TY, Suda W, Oshima K, Hattori M, Takahashi T.

Biosci Biotechnol Biochem. 2017 Feb;81(2):403-410. doi: 10.1080/09168451.2016.1249449. Epub 2016 Nov 1.

PMID:
27800754
50.

Uremic Toxin-Producing Gut Microbiota in Rats with Chronic Kidney Disease.

Kikuchi M, Ueno M, Itoh Y, Suda W, Hattori M.

Nephron. 2017;135(1):51-60. doi: 10.1159/000450619. Epub 2016 Oct 5.

PMID:
27701177

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