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Preservation of cellular nano-architecture by the process of chemical fixation for nanopathology.

Zhou X, Gladstein S, Almassalha LM, Li Y, Eshein A, Cherkezyan L, Viswanathan P, Subramanian H, Szleifer I, Backman V.

PLoS One. 2019 Jul 22;14(7):e0219006. doi: 10.1371/journal.pone.0219006. eCollection 2019.


Autonomous dynamic control of DNA nanostructure self-assembly.

Green LN, Subramanian HKK, Mardanlou V, Kim J, Hariadi RF, Franco E.

Nat Chem. 2019 Jun;11(6):510-520. doi: 10.1038/s41557-019-0251-8. Epub 2019 Apr 22.


A universal method for sensitive and cell-free detection of CRISPR-associated nucleases.

Cox KJ, Subramanian HKK, Samaniego CC, Franco E, Choudhary A.

Chem Sci. 2019 Jan 16;10(9):2653-2662. doi: 10.1039/c8sc03426e. eCollection 2019 Mar 7.


Clinical utility of RNA sequencing to resolve unusual GNE myopathy with a novel promoter deletion.

Chakravorty S, Berger K, Arafat D, Nallamilli BRR, Subramanian HP, Joseph S, Anderson ME, Campbell KP, Glass J, Gibson G, Hegde M.

Muscle Nerve. 2019 Jul;60(1):98-103. doi: 10.1002/mus.26486. Epub 2019 Apr 29.


Multimodal interference-based imaging of nanoscale structure and macromolecular motion uncovers UV induced cellular paroxysm.

Gladstein S, Almassalha LM, Cherkezyan L, Chandler JE, Eshein A, Eid A, Zhang D, Wu W, Bauer GM, Stephens AD, Morochnik S, Subramanian H, Marko JF, Ameer GA, Szleifer I, Backman V.

Nat Commun. 2019 Apr 10;10(1):1652. doi: 10.1038/s41467-019-09717-6.


The midbrain periaqueductal gray as an integrative and interoceptive neural structure for breathing.

Faull OK, Subramanian HH, Ezra M, Pattinson KTS.

Neurosci Biobehav Rev. 2019 Mar;98:135-144. doi: 10.1016/j.neubiorev.2018.12.020. Epub 2019 Jan 3. Review.


Mast cell corticotropin-releasing factor subtype 2 suppresses mast cell degranulation and limits the severity of anaphylaxis and stress-induced intestinal permeability.

D'Costa S, Ayyadurai S, Gibson AJ, Mackey E, Rajput M, Sommerville LJ, Wilson N, Li Y, Kubat E, Kumar A, Subramanian H, Bhargava A, Moeser AJ.

J Allergy Clin Immunol. 2019 May;143(5):1865-1877.e4. doi: 10.1016/j.jaci.2018.08.053. Epub 2018 Nov 12.


Label free localization of nanoparticles in live cancer cells using spectroscopic microscopy.

Spicer GLC, Almassalha L, Martinez IA, Ellis R, Chandler JE, Gladstein S, Zhang D, Nguyen TQ, Feder S, Subramanian H, de la Rica R, Thompson SA, Backman V.

Nanoscale. 2018 Oct 18;10(40):19125-19130. doi: 10.1039/c8nr07481j.


Correction: Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study.

Kalman RS, Stawarz A, Nunes D, Zhang D, Dela Cruz MA, Mohanty A, Subramanian H, Backman V, Roy HK.

PLoS One. 2018 Jul 24;13(7):e0201500. doi: 10.1371/journal.pone.0201500. eCollection 2018.


The Subjective Experience of Patients Undergoing Shunt Surgery for Idiopathic Normal Pressure Hydrocephalus.

Subramanian HE, Mahajan A, Sommaruga S, Falcone GJ, Kahle KT, Matouk CC.

World Neurosurg. 2018 Nov;119:e46-e52. doi: 10.1016/j.wneu.2018.06.209. Epub 2018 Jul 4.


Distinct submembrane localisation compartmentalises cardiac NPR1 and NPR2 signalling to cGMP.

Subramanian H, Froese A, Jönsson P, Schmidt H, Gorelik J, Nikolaev VO.

Nat Commun. 2018 Jun 22;9(1):2446. doi: 10.1038/s41467-018-04891-5.


Intraoperative blood vessel detection and quantification: a Monte Carlo study.

Chaturvedi A, Shukair SA, Vijayvergia M, Le Rolland P, Gunn JW, Subramanian H.

J Biomed Opt. 2018 Jun;23(6):1-9. doi: 10.1117/1.JBO.23.6.067002.


Neoplasms with cytoplasmic vacuoles - Many differential diagnoses on cytology.

Gochhait D, Rangarajan V, Umamahesweran S, Subramanian H, Dehuri P, Siddaraju N.

Cytopathology. 2018 Oct;29(5):489-491. doi: 10.1111/cyt.12570. Epub 2018 Jun 12. No abstract available.


Foamy macrophages on cytosmear-The approach to diagnosis.

Gochhait D, Rangarajan V, Subramanian H, Jacob SE, Siddaraju N, Chandrasekhar L.

Cytopathology. 2018 Dec;29(6):595-597. doi: 10.1111/cyt.12584. Epub 2018 Aug 13. No abstract available.


Biophotonic detection of high order chromatin alterations in field carcinogenesis predicts risk of future hepatocellular carcinoma: A pilot study.

Kalman RS, Stawarz A, Nunes D, Zhang D, Dela Cruz MA, Mohanty A, Subramanian H, Backman V, Roy HK.

PLoS One. 2018 May 17;13(5):e0197427. doi: 10.1371/journal.pone.0197427. eCollection 2018. Erratum in: PLoS One. 2018 Jul 24;13(7):e0201500.


Blood vessel detection, localization and estimation using a smart laparoscopic grasper: a Monte Carlo study.

Chaturvedi A, Shukair SA, Le Rolland P, Vijayvergia M, Gunn JW, Subramanian H.

Biomed Opt Express. 2018 Apr 3;9(5):2027-2040. doi: 10.1364/BOE.9.002027. eCollection 2018 May 1.


Chiral Monomers Ensure Orientational Specificity of Monomer Binding During Polymer Self-Replication.

Subramanian H, Gatenby RA.

J Mol Evol. 2018 Jun;86(5):255-263. doi: 10.1007/s00239-018-9845-9. Epub 2018 May 3.


T7 RNA polymerase non-specifically transcribes and induces disassembly of DNA nanostructures.

Schaffter SW, Green LN, Schneider J, Subramanian HKK, Schulman R, Franco E.

Nucleic Acids Res. 2018 Jun 1;46(10):5332-5343. doi: 10.1093/nar/gky283.


Diagnosis of pseudo-gout (calcium pyrophosphate deposition disease) clinched on cytology.

Subramanian H, Gochhait D, Ganesh RN, Govindarajalou R, Siddaraju N.

Diagn Cytopathol. 2018 Sep;46(9):748-751. doi: 10.1002/dc.23939. Epub 2018 Apr 11.


Correlating colorectal cancer risk with field carcinogenesis progression using partial wave spectroscopic microscopy.

Gladstein S, Damania D, Almassalha LM, Smith LT, Gupta V, Subramanian H, Rex DK, Roy HK, Backman V.

Cancer Med. 2018 May;7(5):2109-2120. doi: 10.1002/cam4.1357. Epub 2018 Mar 23.


Evolutionary advantage of directional symmetry breaking in self-replicating polymers.

Subramanian H, Gatenby RA.

J Theor Biol. 2018 Jun 7;446:128-136. doi: 10.1016/j.jtbi.2018.03.012. Epub 2018 Mar 12.


Cytomorphology of proximal epithelioid sarcoma in the paratesticular location.

Stephen NS, Gochhait D, Dehuri P, Subramanian H, Goldar RS.

Cytopathology. 2018 Aug;29(4):386-389. doi: 10.1111/cyt.12528. Epub 2018 Mar 6. No abstract available.


Measuring Nanoscale Chromatin Heterogeneity with Partial Wave Spectroscopic Microscopy.

Gladstein S, Stawarz A, Almassalha LM, Cherkezyan L, Chandler JE, Zhou X, Subramanian H, Backman V.

Methods Mol Biol. 2018;1745:337-360. doi: 10.1007/978-1-4939-7680-5_19.


Biogenic corrosion inhibitor on mild steel protection in concentrated HCl medium.

Krishnan M, Subramanian H, Dahms HU, Sivanandham V, Seeni P, Gopalan S, Mahalingam A, Rathinam AJ.

Sci Rep. 2018 Feb 8;8(1):2609. doi: 10.1038/s41598-018-20718-1.


Diagnosis of Lafora Disease by Skin Biopsy.

Sathiah P, Gochhait D, Dehuri P, Subramanian H.

J Clin Diagn Res. 2017 Sep;11(9):EJ01-EJ02. doi: 10.7860/JCDR/2017/28570.10552. Epub 2017 Sep 1. No abstract available.


pH-Driven Reversible Self-Assembly of Micron-Scale DNA Scaffolds.

Green LN, Amodio A, Subramanian HKK, Ricci F, Franco E.

Nano Lett. 2017 Dec 13;17(12):7283-7288. doi: 10.1021/acs.nanolett.7b02787. Epub 2017 Nov 28.


Dynamic Control of Aptamer-Ligand Activity Using Strand Displacement Reactions.

Lloyd J, Tran CH, Wadhwani K, Cuba Samaniego C, Subramanian HKK, Franco E.

ACS Synth Biol. 2018 Jan 19;7(1):30-37. doi: 10.1021/acssynbio.7b00277. Epub 2017 Nov 10.


Roles of NHERF Family of PDZ-Binding Proteins in Regulating GPCR Functions.

Broadbent D, Ahmadzai MM, Kammala AK, Yang C, Occhiuto C, Das R, Subramanian H.

Adv Immunol. 2017;136:353-385. doi: 10.1016/ Epub 2017 Jul 11. Review.


Canonical and Noncanonical Signaling Roles of β-Arrestins in Inflammation and Immunity.

Ahmadzai MM, Broadbent D, Occhiuto C, Yang C, Das R, Subramanian H.

Adv Immunol. 2017;136:279-313. doi: 10.1016/ Epub 2017 Jun 17. Review.


The transformation of the nuclear nanoarchitecture in human field carcinogenesis.

Bauer GM, Stypula-Cyrus Y, Subramanian H, Cherkezyan L, Viswanathan P, Zhang D, Iyengar R, Bagalkar S, Derbas J, Graff T, Gladstein S, Almassalha LM, Chandler JE, Roy HK, Backman V.

Future Sci OA. 2017 May 5;3(3):FSO206. doi: 10.4155/fsoa-2017-0027. eCollection 2017 Aug. Review.


The physiological motor patterns produced by neurons in the nucleus retroambiguus in the rat and their modulation by vagal, peripheral chemosensory, and nociceptive stimulation.

Subramanian HH, Huang ZG, Silburn PA, Balnave RJ, Holstege G.

J Comp Neurol. 2018 Feb 1;526(2):229-242. doi: 10.1002/cne.24318. Epub 2017 Oct 27.


Oxidant sensor in the cGMP-binding pocket of PKGIα regulates nitroxyl-mediated kinase activity.

Donzelli S, Goetz M, Schmidt K, Wolters M, Stathopoulou K, Diering S, Prysyazhna O, Polat V, Scotcher J, Dees C, Subramanian H, Butt E, Kamynina A, Schobesberger S, King SB, Nikolaev VO, de Wit C, Leichert LI, Feil R, Eaton P, Cuello F.

Sci Rep. 2017 Aug 30;7(1):9938. doi: 10.1038/s41598-017-09275-1.


Differential Regulation of Mas-Related G Protein-Coupled Receptor X2-Mediated Mast Cell Degranulation by Antimicrobial Host Defense Peptides and Porphyromonas gingivalis Lipopolysaccharide.

Gupta K, Idahosa C, Roy S, Lee D, Subramanian H, Dhingra A, Boesze-Battaglia K, Korostoff J, Ali H.

Infect Immun. 2017 Sep 20;85(10). pii: e00246-17. doi: 10.1128/IAI.00246-17. Print 2017 Oct.


The effects of chemical fixation on the cellular nanostructure.

Li Y, Almassalha LM, Chandler JE, Zhou X, Stypula-Cyrus YE, Hujsak KA, Roth EW, Bleher R, Subramanian H, Szleifer I, Dravid VP, Backman V.

Exp Cell Res. 2017 Sep 15;358(2):253-259. doi: 10.1016/j.yexcr.2017.06.022. Epub 2017 Jun 30.


Protein kinase A activation by the anti-cancer drugs ABT-737 and thymoquinone is caspase-3-dependent and correlates with platelet inhibition and apoptosis.

Rukoyatkina N, Butt E, Subramanian H, Nikolaev VO, Mindukshev I, Walter U, Gambaryan S, Benz PM.

Cell Death Dis. 2017 Jun 29;8(6):e2898. doi: 10.1038/cddis.2017.290.


Oncogenic Osteomalacia: An Approach to Diagnosis with a Case Report.

Dey B, Gochhait D, Subramanian H, Ponnusamy M.

J Clin Diagn Res. 2017 Apr;11(4):ED05-ED07. doi: 10.7860/JCDR/2017/25055.9634. Epub 2017 Apr 1.


A Confounding Case of Inherited Factor V Deficiency Complicated by Inhibitors at First Presentation.

Subramanian H, Kar R, Charles D, Babu H, Ambika P, Dutta TK.

Transfus Med Hemother. 2017 Apr;44(2):114-117. doi: 10.1159/000450793. Epub 2016 Dec 13.


Measuring the Autocorrelation Function of Nanoscale Three-Dimensional Density Distribution in Individual Cells Using Scanning Transmission Electron Microscopy, Atomic Force Microscopy, and a New Deconvolution Algorithm.

Li Y, Zhang D, Capoglu I, Hujsak KA, Damania D, Cherkezyan L, Roth E, Bleher R, Wu JS, Subramanian H, Dravid VP, Backman V.

Microsc Microanal. 2017 Jun;23(3):661-667. doi: 10.1017/S1431927617000447. Epub 2017 Apr 18.


Self-assembly of multi-stranded RNA motifs into lattices and tubular structures.

Stewart JM, Subramanian HKK, Franco E.

Nucleic Acids Res. 2017 May 19;45(9):5628. doi: 10.1093/nar/gkx227. No abstract available.


Correction: Programmable RNA microstructures for coordinated delivery of siRNAs.

Stewart JM, Viard M, Subramanian HK, Roark BK, Afonin KA, Franco E.

Nanoscale. 2017 Apr 13;9(15):5019. doi: 10.1039/c7nr90063e.


Review of interferometric spectroscopy of scattered light for the quantification of subdiffractional structure of biomaterials.

Cherkezyan L, Zhang D, Subramanian H, Capoglu I, Taflove A, Backman V.

J Biomed Opt. 2017 Mar 1;22(3):30901. doi: 10.1117/1.JBO.22.3.030901. Review.


Self-assembly of multi-stranded RNA motifs into lattices and tubular structures.

Stewart JM, Subramanian HKK, Franco E.

Nucleic Acids Res. 2017 May 19;45(9):5449-5457. doi: 10.1093/nar/gkx063. Erratum in: Nucleic Acids Res. 2017 May 19;45(9):5628.


The Global Relationship between Chromatin Physical Topology, Fractal Structure, and Gene Expression.

Almassalha LM, Tiwari A, Ruhoff PT, Stypula-Cyrus Y, Cherkezyan L, Matsuda H, Dela Cruz MA, Chandler JE, White C, Maneval C, Subramanian H, Szleifer I, Roy HK, Backman V.

Sci Rep. 2017 Jan 24;7:41061. doi: 10.1038/srep41061.


PTH1R Mutants Found in Patients with Primary Failure of Tooth Eruption Disrupt G-Protein Signaling.

Subramanian H, Döring F, Kollert S, Rukoyatkina N, Sturm J, Gambaryan S, Stellzig-Eisenhauer A, Meyer-Marcotty P, Eigenthaler M, Wischmeyer E.

PLoS One. 2016 Nov 29;11(11):e0167033. doi: 10.1371/journal.pone.0167033. eCollection 2016.


Label-free imaging of the native, living cellular nanoarchitecture using partial-wave spectroscopic microscopy.

Almassalha LM, Bauer GM, Chandler JE, Gladstein S, Cherkezyan L, Stypula-Cyrus Y, Weinberg S, Zhang D, Thusgaard Ruhoff P, Roy HK, Subramanian H, Chandel NS, Szleifer I, Backman V.

Proc Natl Acad Sci U S A. 2016 Oct 18;113(42):E6372-E6381. Epub 2016 Oct 4.


Rodent Gymnastics: Neurobehavioral Assays in Ischemic Stroke.

Nampoothiri SS, Potluri T, Subramanian H, Krishnamurthy RG.

Mol Neurobiol. 2017 Nov;54(9):6750-6761. doi: 10.1007/s12035-016-0195-6. Epub 2016 Oct 17. Review.


Programmable RNA microstructures for coordinated delivery of siRNAs.

Stewart JM, Viard M, Subramanian HK, Roark BK, Afonin KA, Franco E.

Nanoscale. 2016 Oct 14;8(40):17542-17550. Erratum in: Nanoscale. 2017 Apr 13;9(15):5019.


Procedures for risk-stratification of lung cancer using buccal nanocytology.

Subramanian H, Viswanathan P, Cherkezyan L, Iyengar R, Rozhok S, Verleye M, Derbas J, Czarnecki J, Roy HK, Backman V.

Biomed Opt Express. 2016 Aug 31;7(9):3795-3810. eCollection 2016 Sep 1.


Morphometric profile of large intestinal neuronal plexuses in normal perinatal autopsies and Hirschsprung disease.

Subramanian H, Badhe BA, Toi PC, Sambandan K.

Neurogastroenterol Motil. 2017 Mar;29(3). doi: 10.1111/nmo.12939. Epub 2016 Sep 12.


Erythrocytes do not activate purified and platelet soluble guanylate cyclases even in conditions favourable for NO synthesis.

Gambaryan S, Subramanian H, Kehrer L, Mindukshev I, Sudnitsyna J, Reiss C, Rukoyatkina N, Friebe A, Sharina I, Martin E, Walter U.

Cell Commun Signal. 2016 Aug 11;14(1):16. doi: 10.1186/s12964-016-0139-9.

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