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Items: 14

1.

ChlamBase: a curated model organism database for the Chlamydia research community.

Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI.

Database (Oxford). 2019 Jan 1;2019. pii: baz091. doi: 10.1093/database/baz091. No abstract available.

2.

Triflic Acid Treatment Enables LC-MS/MS Analysis of Insoluble Bacterial Biomass.

Wang AY, Thuy-Boun PS, Stupp GS, Su AI, Wolan DW.

J Proteome Res. 2018 Sep 7;17(9):2978-2986. doi: 10.1021/acs.jproteome.8b00166. Epub 2018 Aug 8.

PMID:
30019906
3.

Metaproteomics of Colonic Microbiota Unveils Discrete Protein Functions among Colitic Mice and Control Groups.

Moon C, Stupp GS, Su AI, Wolan DW.

Proteomics. 2018 Feb;18(3-4). doi: 10.1002/pmic.201700391. Epub 2018 Feb 2.

4.

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.

Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM.

Database (Oxford). 2017 Jan 1;2017(1). doi: 10.1093/database/bax025.

5.

13C Metabolomics: NMR and IROA for Unknown Identification.

Clendinen CS, Stupp GS, Wang B, Garrett TJ, Edison AS.

Curr Metabolomics. 2016 Aug;4(2):116-120. doi: 10.2174/2213235X04666160407212156.

6.

Quantitative Metaproteomics and Activity-Based Probe Enrichment Reveals Significant Alterations in Protein Expression from a Mouse Model of Inflammatory Bowel Disease.

Mayers MD, Moon C, Stupp GS, Su AI, Wolan DW.

J Proteome Res. 2017 Feb 3;16(2):1014-1026. doi: 10.1021/acs.jproteome.6b00938. Epub 2017 Jan 23.

7.

A comprehensive and scalable database search system for metaproteomics.

Chatterjee S, Stupp GS, Park SK, Ducom JC, Yates JR 3rd, Su AI, Wolan DW.

BMC Genomics. 2016 Aug 16;17(1):642. doi: 10.1186/s12864-016-2855-3.

8.

High-performance web services for querying gene and variant annotation.

Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C.

Genome Biol. 2016 May 6;17(1):91. doi: 10.1186/s13059-016-0953-9.

9.

An overview of methods using (13)C for improved compound identification in metabolomics and natural products.

Clendinen CS, Stupp GS, Ajredini R, Lee-McMullen B, Beecher C, Edison AS.

Front Plant Sci. 2015 Aug 25;6:611. doi: 10.3389/fpls.2015.00611. eCollection 2015. Review.

10.

Metabolomics and Natural-Products Strategies to Study Chemical Ecology in Nematodes.

Edison AS, Clendinen CS, Ajredini R, Beecher C, Ponce FV, Stupp GS.

Integr Comp Biol. 2015 Sep;55(3):478-85. doi: 10.1093/icb/icv077. Epub 2015 Jul 2. Review.

11.

¹³C NMR metabolomics: applications at natural abundance.

Clendinen CS, Lee-McMullen B, Williams CM, Stupp GS, Vandenborne K, Hahn DA, Walter GA, Edison AS.

Anal Chem. 2014 Sep 16;86(18):9242-50. doi: 10.1021/ac502346h. Epub 2014 Aug 29.

12.

Isotopic ratio outlier analysis global metabolomics of Caenorhabditis elegans.

Stupp GS, Clendinen CS, Ajredini R, Szewc MA, Garrett T, Menger RF, Yost RA, Beecher C, Edison AS.

Anal Chem. 2013 Dec 17;85(24):11858-11865. doi: 10.1021/ac4025413. Epub 2013 Dec 4.

13.

Chemical detoxification of small molecules by Caenorhabditis elegans.

Stupp GS, von Reuss SH, Izrayelit Y, Ajredini R, Schroeder FC, Edison AS.

ACS Chem Biol. 2013 Feb 15;8(2):309-13. doi: 10.1021/cb300520u. Epub 2012 Nov 26.

14.

Whole-genome sequencing and phenotypic analysis of Bacillus subtilis mutants following evolution under conditions of relaxed selection for sporulation.

Brown CT, Fishwick LK, Chokshi BM, Cuff MA, Jackson JM 4th, Oglesby T, Rioux AT, Rodriguez E, Stupp GS, Trupp AH, Woollcombe-Clarke JS, Wright TN, Zaragoza WJ, Drew JC, Triplett EW, Nicholson WL.

Appl Environ Microbiol. 2011 Oct;77(19):6867-77. doi: 10.1128/AEM.05272-11. Epub 2011 Aug 5.

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