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Items: 10

1.

Machine Learning of Stem Cell Identities From Single-Cell Expression Data via Regulatory Network Archetypes.

Stumpf PS, MacArthur BD.

Front Genet. 2019 Jan 22;10:2. doi: 10.3389/fgene.2019.00002. eCollection 2019.

2.

Thrombopoietin Metabolically Primes Hematopoietic Stem Cells to Megakaryocyte-Lineage Differentiation.

Nakamura-Ishizu A, Matsumura T, Stumpf PS, Umemoto T, Takizawa H, Takihara Y, O'Neil A, Majeed ABBA, MacArthur BD, Suda T.

Cell Rep. 2018 Nov 13;25(7):1772-1785.e6. doi: 10.1016/j.celrep.2018.10.059.

3.

Stem Cell Differentiation as a Non-Markov Stochastic Process.

Stumpf PS, Smith RCG, Lenz M, Schuppert A, Müller FJ, Babtie A, Chan TE, Stumpf MPH, Please CP, Howison SD, Arai F, MacArthur BD.

Cell Syst. 2017 Sep 27;5(3):268-282.e7. doi: 10.1016/j.cels.2017.08.009.

4.

Nanog Fluctuations in Embryonic Stem Cells Highlight the Problem of Measurement in Cell Biology.

Smith RCG, Stumpf PS, Ridden SJ, Sim A, Filippi S, Harrington HA, MacArthur BD.

Biophys J. 2017 Jun 20;112(12):2641-2652. doi: 10.1016/j.bpj.2017.05.005.

5.

Quantification of intracellular payload release from polymersome nanoparticles.

Scarpa E, Bailey JL, Janeczek AA, Stumpf PS, Johnston AH, Oreffo RO, Woo YL, Cheong YC, Evans ND, Newman TA.

Sci Rep. 2016 Jul 11;6:29460. doi: 10.1038/srep29460.

6.

Single-cell pluripotency regulatory networks.

Stumpf PS, Ewing R, MacArthur BD.

Proteomics. 2016 Sep;16(17):2303-12. doi: 10.1002/pmic.201500528. Epub 2016 Aug 12.

PMID:
27357612
7.

MicroRNA-146a regulates human foetal femur derived skeletal stem cell differentiation by down-regulating SMAD2 and SMAD3.

Cheung KS, Sposito N, Stumpf PS, Wilson DI, Sanchez-Elsner T, Oreffo RO.

PLoS One. 2014 Jun 3;9(6):e98063. doi: 10.1371/journal.pone.0098063. eCollection 2014.

8.

Visualization and clustering of high-dimensional transcriptome data using GATE.

Stumpf PS, MacArthur BD.

Methods Mol Biol. 2014;1150:131-9. doi: 10.1007/978-1-4939-0512-6_7.

PMID:
24743994
9.

First steps towards the successful surface-based cultivation of human embryonic stem cells in hanging drop systems.

Schulz JC, Stumpf PS, Katsen-Globa A, Sachinidis A, Hescheler J, Zimmermann H.

Eng Life Sci. 2012 Nov;12(6):584-587. Epub 2012 Aug 1.

10.

Nanog-dependent feedback loops regulate murine embryonic stem cell heterogeneity.

MacArthur BD, Sevilla A, Lenz M, Müller FJ, Schuldt BM, Schuppert AA, Ridden SJ, Stumpf PS, Fidalgo M, Ma'ayan A, Wang J, Lemischka IR.

Nat Cell Biol. 2012 Nov;14(11):1139-47. doi: 10.1038/ncb2603. Epub 2012 Oct 28.

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