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Items: 1 to 50 of 290

1.

Parametric and non-parametric gradient matching for network inference: a comparison.

Dony L, He F, Stumpf MPH.

BMC Bioinformatics. 2019 Jan 25;20(1):52. doi: 10.1186/s12859-018-2590-7.

2.

Modular lattice constructs for biological joint resurfacing.

Gelse K, Biggemann J, Stumpf M, Halmheu M, Grüneboom A, Scholtysek C, Pachowsky ML, Kleyer A, Hueber A, Krönke G, Fey T.

Tissue Eng Part A. 2019 Jan 14. doi: 10.1089/ten.TEA.2018.0231. [Epub ahead of print]

PMID:
30638150
3.

An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling.

Jetka T, Nienałtowski K, Filippi S, Stumpf MPH, Komorowski M.

Nat Commun. 2018 Nov 2;9(1):4591. doi: 10.1038/s41467-018-07085-1.

4.

The use of drugs and medical students: a literature review.

Candido FJ, Souza R, Stumpf MA, Fernandes LG, Veiga R, Santin M, Kluthcovsky A.

Rev Assoc Med Bras (1992). 2018 May;64(5):462-468. doi: 10.1590/1806-9282.64.05.462. Review.

5.

Construction of quasipotentials for stochastic dynamical systems: An optimization approach.

Brackston RD, Wynn A, Stumpf MPH.

Phys Rev E. 2018 Aug;98(2-1):022136. doi: 10.1103/PhysRevE.98.022136.

6.

Transition state characteristics during cell differentiation.

Brackston RD, Lakatos E, Stumpf MPH.

PLoS Comput Biol. 2018 Sep 20;14(9):e1006405. doi: 10.1371/journal.pcbi.1006405. eCollection 2018 Sep.

7.

Modular ceramic scaffolds for individual implants.

Biggemann J, Pezoldt M, Stumpf M, Greil P, Fey T.

Acta Biomater. 2018 Oct 15;80:390-400. doi: 10.1016/j.actbio.2018.09.008. Epub 2018 Sep 11.

PMID:
30213769
8.

Biology challenging statistics.

Stumpf MPH.

Stat Appl Genet Mol Biol. 2018 Aug 30;17(4). pii: /j/sagmb.2018.17.issue-4/sagmb-2018-0048/sagmb-2018-0048.xml. doi: 10.1515/sagmb-2018-0048. No abstract available.

PMID:
30169328
9.

The regulatory subunit phr2AB of Dictyostelium discoideum phosphatase PP2A interacts with the centrosomal protein CEP161, a CDK5RAP2 ortholog.

Müller R, Stumpf M, Wehrstedt R, Sukumaran SK, Karow MA, Marko M, Noegel AA, Eichinger L.

Genes Cells. 2018 Oct;23(10):923-931. doi: 10.1111/gtc.12637. Epub 2018 Sep 21.

PMID:
30133996
10.

Expression of N471D strumpellin leads to defects in the endolysosomal system.

Song L, Rijal R, Karow M, Stumpf M, Hahn O, Park L, Insall R, Schröder R, Hofmann A, Clemen CS, Eichinger L.

Dis Model Mech. 2018 Sep 13;11(9). pii: dmm033449. doi: 10.1242/dmm.033449.

11.

Improvement of clinical management and outcome in hepatocellular carcinoma nowadays compared with historical cohorts.

Schellhaas B, Strobel D, Stumpf M, Ganslmayer M, Pfeifer L, Goertz RS, Neurath MF, Zopf S.

Eur J Gastroenterol Hepatol. 2018 Dec;30(12):1422-1427. doi: 10.1097/MEG.0000000000001221.

PMID:
30052538
12.

Comparação entre cirurgia aberta e endovascular no tratamento do aneurisma da artéria poplítea: uma revisão.

Gonçalves AFF, Pelek CA, Nogueira LS, de Carvalho RF, Stumpf MAM, Gomes RZ, Kluthcovsky ACGC.

J Vasc Bras. 2018 Jan-Mar;17(1):42-48. doi: 10.1590/1677-5449.008817. Review. Portuguese. No abstract available.

PMID:
29930680
Free PMC Article
13.

Correction: Heteromeric p97/p97R155C Complexes Induce Dominant Negative Changes in Wild-Type and Autophagy 9-Deficient Dictyostelium strains.

Arhzaouy K, Strucksberg KH, Tung SM, Tangavelou K, Stumpf M, Faix J, Schröder R, Clemen CS, Eichinger L.

PLoS One. 2018 Jun 18;13(6):e0199548. doi: 10.1371/journal.pone.0199548. eCollection 2018.

14.

Acute pancreatitis secondary to oral contraceptive-induced hypertriglyceridemia: a case report.

Stumpf MAM, Kluthcovsky ACGC, Okamoto JM, Schrut GCA, Cajoeiro PO, Chacra APM, Bizeli R.

Gynecol Endocrinol. 2018 Nov;34(11):930-932. doi: 10.1080/09513590.2018.1473365. Epub 2018 May 21.

PMID:
29782195
15.

Carotid strain measurement in patients with pseudoxanthoma elasticum - Hint for a different pathomechanism?

Passon SG, Küllmar V, Blatzheim AK, Pausewang KS, Stumpf MJ, Hendig D, Gliem M, Pingel S, Schueler R, Skowasch D, Schahab N, Nickenig G, Schaefer CA.

Intractable Rare Dis Res. 2018 Feb;7(1):25-31. doi: 10.5582/irdr.2018.01004.

16.

Impairment of vascular strain in patients with obstructive sleep apnea.

Stumpf MJ, Schaefer CA, Krycki J, Schueler R, Pizarro C, Nickenig G, Steinmetz M, Skowasch D, Tuleta I.

PLoS One. 2018 Feb 28;13(2):e0193397. doi: 10.1371/journal.pone.0193397. eCollection 2018.

17.

Sphingosine Kinase 2 Modulates Retinal Neovascularization in the Mouse Model of Oxygen-Induced Retinopathy.

Eresch J, Stumpf M, Koch A, Vutukuri R, Ferreirós N, Schreiber Y, Schröder K, Devraj K, Popp R, Huwiler A, Hattenbach LO, Pfeilschifter J, Pfeilschifter W.

Invest Ophthalmol Vis Sci. 2018 Feb 1;59(2):653-661. doi: 10.1167/iovs.17-22544. Erratum in: Invest Ophthalmol Vis Sci. 2018 May 1;59(6):2503.

18.

Gestational Primary Hyperparathyroidism Due to Ectopic Parathyroid Adenoma: Case Report and Literature Review.

Horton WB, Stumpf MM, Coppock JD, Lancaster L, Dalkin AC, Liu Z, Chisholm CA, Smith PW, Kirk SE.

J Endocr Soc. 2017 Jun 30;1(9):1150-1155. doi: 10.1210/js.2017-00172. eCollection 2017 Sep 1.

19.

PEITH(Θ): perfecting experiments with information theory in Python with GPU support.

Dony L, Mackerodt J, Ward S, Filippi S, Stumpf MPH, Liepe J.

Bioinformatics. 2018 Apr 1;34(7):1249-1250. doi: 10.1093/bioinformatics/btx776.

20.

Stem Cell Differentiation as a Non-Markov Stochastic Process.

Stumpf PS, Smith RCG, Lenz M, Schuppert A, Müller FJ, Babtie A, Chan TE, Stumpf MPH, Please CP, Howison SD, Arai F, MacArthur BD.

Cell Syst. 2017 Sep 27;5(3):268-282.e7. doi: 10.1016/j.cels.2017.08.009.

21.

Gene Regulatory Network Inference from Single-Cell Data Using Multivariate Information Measures.

Chan TE, Stumpf MPH, Babtie AC.

Cell Syst. 2017 Sep 27;5(3):251-267.e3. doi: 10.1016/j.cels.2017.08.014.

22.

Control mechanisms for stochastic biochemical systems via computation of reachable sets.

Lakatos E, Stumpf MPH.

R Soc Open Sci. 2017 Aug 23;4(8):160790. doi: 10.1098/rsos.160790. eCollection 2017 Aug.

23.

Single Cell Phenotyping Reveals Heterogeneity Among Hematopoietic Stem Cells Following Infection.

MacLean AL, Smith MA, Liepe J, Sim A, Khorshed R, Rashidi NM, Scherf N, Krinner A, Roeder I, Lo Celso C, Stumpf MPH.

Stem Cells. 2017 Nov;35(11):2292-2304. doi: 10.1002/stem.2692. Epub 2017 Sep 24.

24.

The function of the inner nuclear envelope protein SUN1 in mRNA export is regulated by phosphorylation.

Li P, Stumpf M, Müller R, Eichinger L, Glöckner G, Noegel AA.

Sci Rep. 2017 Aug 22;7(1):9157. doi: 10.1038/s41598-017-08837-7.

25.

How to deal with parameters for whole-cell modelling.

Babtie AC, Stumpf MPH.

J R Soc Interface. 2017 Aug;14(133). pii: 20170237. doi: 10.1098/rsif.2017.0237. Epub 2017 Aug 2. Review.

26.

Influence of Different Irradiation Protocols on Vascularization and Bone Formation Parameters in Rat Femora.

Rottensteiner-Brandl U, Distel L, Stumpf M, Fey T, Köhn K, Bertram U, Lingens LF, Greil P, Horch RE, Arkudas A.

Tissue Eng Part C Methods. 2017 Oct;23(10):583-591. doi: 10.1089/ten.TEC.2017.0170. Epub 2017 Sep 14.

PMID:
28741426
27.

A tripeptidyl peptidase 1 is a binding partner of the Golgi pH regulator (GPHR) in Dictyostelium.

Stumpf M, Müller R, Gaßen B, Wehrstedt R, Fey P, Karow MA, Eichinger L, Glöckner G, Noegel AA.

Dis Model Mech. 2017 Jul 1;10(7):897-907. doi: 10.1242/dmm.029280. Epub 2017 May 25.

28.

Protein degradation rate is the dominant mechanism accounting for the differences in protein abundance of basal p53 in a human breast and colorectal cancer cell line.

Lakatos E, Salehi-Reyhani A, Barclay M, Stumpf MPH, Klug DR.

PLoS One. 2017 May 10;12(5):e0177336. doi: 10.1371/journal.pone.0177336. eCollection 2017.

29.

Reconciling Epigenetic Memory and Transcriptional Responsiveness.

Fisher AG, Stumpf MPH, Merkenschlager M.

Cell Syst. 2017 Apr 26;4(4):373-374. doi: 10.1016/j.cels.2017.04.005.

30.

A Comprehensive Evaluation of Nasal and Bronchial Cytokines and Chemokines Following Experimental Rhinovirus Infection in Allergic Asthma: Increased Interferons (IFN-γ and IFN-λ) and Type 2 Inflammation (IL-5 and IL-13).

Hansel TT, Tunstall T, Trujillo-Torralbo MB, Shamji B, Del-Rosario A, Dhariwal J, Kirk PDW, Stumpf MPH, Koopmann J, Telcian A, Aniscenko J, Gogsadze L, Bakhsoliani E, Stanciu L, Bartlett N, Edwards M, Walton R, Mallia P, Hunt TM, Hunt TL, Hunt DG, Westwick J, Edwards M, Kon OM, Jackson DJ, Johnston SL.

EBioMedicine. 2017 May;19:128-138. doi: 10.1016/j.ebiom.2017.03.033. Epub 2017 Mar 28.

31.

Dairy cows change locomotion score and sensitivity to pain with trimming and infectious or non-infectious lesions.

Passos LT, Cruz EA, Fischer V, Porciuncula GC, Werncke D, Dalto AG, Stumpf MT, Vizzotto EF, da Silveira ID.

Trop Anim Health Prod. 2017 Apr;49(4):851-856. doi: 10.1007/s11250-017-1273-0. Epub 2017 Mar 22.

PMID:
28332069
32.

Extracellular proteasome-osteopontin circuit regulates cell migration with implications in multiple sclerosis.

Dianzani C, Bellavista E, Liepe J, Verderio C, Martucci M, Santoro A, Chiocchetti A, Gigliotti CL, Boggio E, Ferrara B, Riganti L, Keller C, Janek K, Niewienda A, Fenoglio C, Sorosina M, Cantello R, Kloetzel PM, Stumpf MP, Paul F, Ruprecht K, Galimberti D, Martinelli Boneschi F, Comi C, Dianzani U, Mishto M.

Sci Rep. 2017 Mar 9;7:43718. doi: 10.1038/srep43718.

33.

Oregano Extract Added into the Diet of Dairy Heifers Changes Feeding Behavior and Concentrate Intake.

Kolling GJ, Panazzolo DM, Gabbi AM, Stumpf MT, Dos Passos MB, da Cruz EA, Fischer V.

ScientificWorldJournal. 2016;2016:8917817. doi: 10.1155/2016/8917817. Epub 2016 Dec 27.

34.

CDK5RAP2 interaction with components of the Hippo signaling pathway may play a role in primary microcephaly.

Sukumaran SK, Stumpf M, Salamon S, Ahmad I, Bhattacharya K, Fischer S, Müller R, Altmüller J, Budde B, Thiele H, Tariq M, Malik NA, Nürnberg P, Baig SM, Hussain MS, Noegel AA.

Mol Genet Genomics. 2017 Apr;292(2):365-383. doi: 10.1007/s00438-016-1277-x. Epub 2016 Dec 21.

35.

A large fraction of HLA class I ligands are proteasome-generated spliced peptides.

Liepe J, Marino F, Sidney J, Jeko A, Bunting DE, Sette A, Kloetzel PM, Stumpf MP, Heck AJ, Mishto M.

Science. 2016 Oct 21;354(6310):354-358. Epub 2016 Oct 20.

36.

Model of Host-Pathogen Interaction Dynamics Links In Vivo Optical Imaging and Immune Responses.

Ale A, Crepin VF, Collins JW, Constantinou N, Habibzay M, Babtie AC, Frankel G, Stumpf MP.

Infect Immun. 2016 Dec 29;85(1). pii: e00606-16. doi: 10.1128/IAI.00606-16. Print 2017 Jan.

37.

Concise Review: Stem Cell Population Biology: Insights from Hematopoiesis.

MacLean AL, Lo Celso C, Stumpf MP.

Stem Cells. 2017 Jan;35(1):80-88. doi: 10.1002/stem.2508. Epub 2016 Oct 26. Review.

38.

Accurate Reconstruction of Cell and Particle Tracks from 3D Live Imaging Data.

Liepe J, Sim A, Weavers H, Ward L, Martin P, Stumpf MP.

Cell Syst. 2016 Jul;3(1):102-7. doi: 10.1016/j.cels.2016.06.002. Epub 2016 Jul 21.

39.

Systems Analysis of the Dynamic Inflammatory Response to Tissue Damage Reveals Spatiotemporal Properties of the Wound Attractant Gradient.

Weavers H, Liepe J, Sim A, Wood W, Martin P, Stumpf MPH.

Curr Biol. 2016 Aug 8;26(15):1975-1989. doi: 10.1016/j.cub.2016.06.012. Epub 2016 Jul 14.

40.

Systematic tracking of altered haematopoiesis during sporozoite-mediated malaria development reveals multiple response points.

Vainieri ML, Blagborough AM, MacLean AL, Haltalli ML, Ruivo N, Fletcher HA, Stumpf MP, Sinden RE, Celso CL.

Open Biol. 2016 Jun;6(6). pii: 160038. doi: 10.1098/rsob.160038.

41.

Robustness of MEK-ERK Dynamics and Origins of Cell-to-Cell Variability in MAPK Signaling.

Filippi S, Barnes CP, Kirk PD, Kudo T, Kunida K, McMahon SS, Tsuchiya T, Wada T, Kuroda S, Stumpf MP.

Cell Rep. 2016 Jun 14;15(11):2524-35. doi: 10.1016/j.celrep.2016.05.024. Epub 2016 Jun 2.

42.

MEANS: python package for Moment Expansion Approximation, iNference and Simulation.

Fan S, Geissmann Q, Lakatos E, Lukauskas S, Ale A, Babtie AC, Kirk PD, Stumpf MP.

Bioinformatics. 2016 Sep 15;32(18):2863-5. doi: 10.1093/bioinformatics/btw229. Epub 2016 May 5.

43.

Fine-Tuning of Pten Localization and Phosphatase Activity Is Essential for Zebrafish Angiogenesis.

Stumpf M, Blokzijl-Franke S, den Hertog J.

PLoS One. 2016 May 3;11(5):e0154771. doi: 10.1371/journal.pone.0154771. eCollection 2016.

44.

Feedback mechanisms control coexistence in a stem cell model of acute myeloid leukaemia.

Crowell HL, MacLean AL, Stumpf MP.

J Theor Biol. 2016 Jul 21;401:43-53. doi: 10.1016/j.jtbi.2016.04.002. Epub 2016 Apr 27.

45.

Coalescent models for developmental biology and the spatio-temporal dynamics of growing tissues.

Smadbeck P, Stumpf MP.

J R Soc Interface. 2016 Apr;13(117). pii: 20160112. doi: 10.1098/rsif.2016.0112.

46.

A graph theoretical approach to data fusion.

Žurauskienė J, Kirk PD, Stumpf MP.

Stat Appl Genet Mol Biol. 2016 Apr;15(2):107-22. doi: 10.1515/sagmb-2016-0016.

47.

ERP variabilities as a function of reading maturation.

Charollais A, Lempereur A, Simon V, Seraffin C, Lalonde R, Stumpf MH, Rebai M, Bannier D.

Neurophysiol Clin. 2016 Nov;46(4-5):313-315. doi: 10.1016/j.neucli.2015.12.004. Epub 2016 Feb 15. No abstract available.

PMID:
26899932
48.

Differential Requirement for Pten Lipid and Protein Phosphatase Activity during Zebrafish Embryonic Development.

Stumpf M, den Hertog J.

PLoS One. 2016 Feb 5;11(2):e0148508. doi: 10.1371/journal.pone.0148508. eCollection 2016.

49.

Mathematical and Statistical Techniques for Systems Medicine: The Wnt Signaling Pathway as a Case Study.

MacLean AL, Harrington HA, Stumpf MP, Byrne HM.

Methods Mol Biol. 2016;1386:405-39. doi: 10.1007/978-1-4939-3283-2_18. Review.

PMID:
26677193
50.

ANALYSIS OF FOOD TOLERANCE IN PATIENTS SUBMITTED TO BARIATRIC SURGERY USING THE QUESTIONNAIRE QUALITY OF ALIMENTATION.

Stumpf MA, Rodrigues MR, Kluthcovsky AC, Travalini F, Milléo FQ.

Arq Bras Cir Dig. 2015;28 Suppl 1:79-83. doi: 10.1590/S0102-6720201500S100021. Review. English, Portuguese.

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