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Items: 43

1.

Interactions and Coadaptation in Plant Metaorganisms.

Hassani MA, Özkurt E, Seybold H, Dagan T, Stukenbrock EH.

Annu Rev Phytopathol. 2019 Jul 26. doi: 10.1146/annurev-phyto-082718-100008. [Epub ahead of print]

PMID:
31348865
2.

Quantifying the efficiency and biases of forest Saccharomyces sampling strategies.

Boynton PJ, Kowallik V, Landermann D, Stukenbrock EH.

Yeast. 2019 Jul 26. doi: 10.1002/yea.3435. [Epub ahead of print]

PMID:
31348543
3.

The genomic determinants of adaptive evolution in a fungal pathogen.

Grandaubert J, Dutheil JY, Stukenbrock EH.

Evol Lett. 2019 May 1;3(3):299-312. doi: 10.1002/evl3.117. eCollection 2019 Jun.

4.

Destabilization of chromosome structure by histone H3 lysine 27 methylation.

Möller M, Schotanus K, Soyer JL, Haueisen J, Happ K, Stralucke M, Happel P, Smith KM, Connolly LR, Freitag M, Stukenbrock EH.

PLoS Genet. 2019 Apr 22;15(4):e1008093. doi: 10.1371/journal.pgen.1008093. eCollection 2019 Apr.

5.

Highly flexible infection programs in a specialized wheat pathogen.

Haueisen J, Möller M, Eschenbrenner CJ, Grandaubert J, Seybold H, Adamiak H, Stukenbrock EH.

Ecol Evol. 2018 Dec 26;9(1):275-294. doi: 10.1002/ece3.4724. eCollection 2019 Jan.

6.

Extraordinary Genome Instability and Widespread Chromosome Rearrangements During Vegetative Growth.

Möller M, Habig M, Freitag M, Stukenbrock EH.

Genetics. 2018 Oct;210(2):517-529. doi: 10.1534/genetics.118.301050. Epub 2018 Aug 2.

7.

Interspecific Gene Exchange as a Driver of Adaptive Evolution in Fungi.

Feurtey A, Stukenbrock EH.

Annu Rev Microbiol. 2018 Sep 8;72:377-398. doi: 10.1146/annurev-micro-090817-062753. Epub 2018 Jun 21.

PMID:
29927707
8.

Genomewide signatures of selection in Epichloë reveal candidate genes for host specialization.

Schirrmann MK, Zoller S, Croll D, Stukenbrock EH, Leuchtmann A, Fior S.

Mol Ecol. 2018 Aug;27(15):3070-3086. doi: 10.1111/mec.14585. Epub 2018 Apr 27.

PMID:
29633410
9.

Fine-Scale Recombination Maps of Fungal Plant Pathogens Reveal Dynamic Recombination Landscapes and Intragenic Hotspots.

Stukenbrock EH, Dutheil JY.

Genetics. 2018 Mar;208(3):1209-1229. doi: 10.1534/genetics.117.300502. Epub 2017 Dec 20.

10.
11.

Evolution and genome architecture in fungal plant pathogens.

Möller M, Stukenbrock EH.

Nat Rev Microbiol. 2017 Nov 10;15(12):771. doi: 10.1038/nrmicro.2017.143.

PMID:
29123226
12.

Evolution and genome architecture in fungal plant pathogens.

Möller M, Stukenbrock EH.

Nat Rev Microbiol. 2017 Dec;15(12):756-771. doi: 10.1038/nrmicro.2017.76. Epub 2017 Aug 7. Review. Erratum in: Nat Rev Microbiol. 2017 Nov 10;15(12 ):771.

PMID:
28781365
13.

Rapid emergence of pathogens in agro-ecosystems: global threats to agricultural sustainability and food security.

McDonald BA, Stukenbrock EH.

Philos Trans R Soc Lond B Biol Sci. 2016 Dec 5;371(1709). pii: 20160026. doi: 10.1098/rstb.2016.0026. Review.

14.

Life cycle specialization of filamentous pathogens - colonization and reproduction in plant tissues.

Haueisen J, Stukenbrock EH.

Curr Opin Microbiol. 2016 Aug;32:31-37. doi: 10.1016/j.mib.2016.04.015. Epub 2016 May 3. Review.

PMID:
27153045
15.

The Role of Hybridization in the Evolution and Emergence of New Fungal Plant Pathogens.

Stukenbrock EH.

Phytopathology. 2016 Feb;106(2):104-12. doi: 10.1094/PHYTO-08-15-0184-RVW. Epub 2016 Jan 29. Review.

16.

Hybridization speeds up the emergence and evolution of a new pathogen species.

Stukenbrock EH.

Nat Genet. 2016 Feb;48(2):113-5. doi: 10.1038/ng.3494.

PMID:
26813763
17.

Histone modifications rather than the novel regional centromeres of Zymoseptoria tritici distinguish core and accessory chromosomes.

Schotanus K, Soyer JL, Connolly LR, Grandaubert J, Happel P, Smith KM, Freitag M, Stukenbrock EH.

Epigenetics Chromatin. 2015 Oct 1;8:41. doi: 10.1186/s13072-015-0033-5. eCollection 2015.

18.

Rapidly Evolving Genes Are Key Players in Host Specialization and Virulence of the Fungal Wheat Pathogen Zymoseptoria tritici (Mycosphaerella graminicola).

Poppe S, Dorsheimer L, Happel P, Stukenbrock EH.

PLoS Pathog. 2015 Jul 30;11(7):e1005055. doi: 10.1371/journal.ppat.1005055. eCollection 2015 Jul.

19.
20.

Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).

Soyer JL, Möller M, Schotanus K, Connolly LR, Galazka JM, Freitag M, Stukenbrock EH.

Fungal Genet Biol. 2015 Jun;79:63-70. doi: 10.1016/j.fgb.2015.03.006. Epub 2015 Apr 7.

21.

Expression profiling of the wheat pathogen Zymoseptoria tritici reveals genomic patterns of transcription and host-specific regulatory programs.

Kellner R, Bhattacharyya A, Poppe S, Hsu TY, Brem RB, Stukenbrock EH.

Genome Biol Evol. 2014 May 14;6(6):1353-65. doi: 10.1093/gbe/evu101.

22.

Hitchhiking selection is driving intron gain in a pathogenic fungus.

Brunner PC, Torriani SF, Croll D, Stukenbrock EH, McDonald BA.

Mol Biol Evol. 2014 Jul;31(7):1741-9. doi: 10.1093/molbev/msu123. Epub 2014 Apr 7.

PMID:
24710519
23.

MafFilter: a highly flexible and extensible multiple genome alignment files processor.

Dutheil JY, Gaillard S, Stukenbrock EH.

BMC Genomics. 2014 Jan 22;15:53. doi: 10.1186/1471-2164-15-53.

24.

Evolution, selection and isolation: a genomic view of speciation in fungal plant pathogens.

Stukenbrock EH.

New Phytol. 2013 Sep;199(4):895-907. doi: 10.1111/nph.12374. Epub 2013 Jun 19. Review.

25.

Coevolution and life cycle specialization of plant cell wall degrading enzymes in a hemibiotrophic pathogen.

Brunner PC, Torriani SF, Croll D, Stukenbrock EH, McDonald BA.

Mol Biol Evol. 2013 Jun;30(6):1337-47. doi: 10.1093/molbev/mst041. Epub 2013 Mar 20.

26.

A population genomics perspective on the emergence and adaptation of new plant pathogens in agro-ecosystems.

Stukenbrock EH, Bataillon T.

PLoS Pathog. 2012 Sep;8(9):e1002893. doi: 10.1371/journal.ppat.1002893. Epub 2012 Sep 27. No abstract available.

27.

Fusion of two divergent fungal individuals led to the recent emergence of a unique widespread pathogen species.

Stukenbrock EH, Christiansen FB, Hansen TT, Dutheil JY, Schierup MH.

Proc Natl Acad Sci U S A. 2012 Jul 3;109(27):10954-9. doi: 10.1073/pnas.1201403109. Epub 2012 Jun 18.

28.

Zymoseptoria ardabiliae and Z. pseudotritici, two progenitor species of the septoria tritici leaf blotch fungus Z. tritici (synonym: Mycosphaerella graminicola).

Stukenbrock EH, Quaedvlieg W, Javan-Nikhah M, Zala M, Crous PW, McDonald BA.

Mycologia. 2012 Nov-Dec;104(6):1397-407. doi: 10.3852/11-374. Epub 2012 Jun 6.

PMID:
22675045
29.

Quantitative variation in effector activity of ToxA isoforms from Stagonospora nodorum and Pyrenophora tritici-repentis.

Tan KC, Ferguson-Hunt M, Rybak K, Waters OD, Stanley WA, Bond CS, Stukenbrock EH, Friesen TL, Faris JD, McDonald BA, Oliver RP.

Mol Plant Microbe Interact. 2012 Apr;25(4):515-22. doi: 10.1094/MPMI-10-11-0273.

30.

Comparing fungal genomes: insight into functional and evolutionary processes.

Stukenbrock EH, Dutheil JY.

Methods Mol Biol. 2012;835:531-48. doi: 10.1007/978-1-61779-501-5_33.

PMID:
22183676
31.

Evidence for extensive recent intron transposition in closely related fungi.

Torriani SF, Stukenbrock EH, Brunner PC, McDonald BA, Croll D.

Curr Biol. 2011 Dec 6;21(23):2017-22. doi: 10.1016/j.cub.2011.10.041. Epub 2011 Nov 17.

32.

The making of a new pathogen: insights from comparative population genomics of the domesticated wheat pathogen Mycosphaerella graminicola and its wild sister species.

Stukenbrock EH, Bataillon T, Dutheil JY, Hansen TT, Li R, Zala M, McDonald BA, Wang J, Schierup MH.

Genome Res. 2011 Dec;21(12):2157-66. doi: 10.1101/gr.118851.110. Epub 2011 Oct 12.

33.

Whole-genome and chromosome evolution associated with host adaptation and speciation of the wheat pathogen Mycosphaerella graminicola.

Stukenbrock EH, Jørgensen FG, Zala M, Hansen TT, McDonald BA, Schierup MH.

PLoS Genet. 2010 Dec 23;6(12):e1001189. doi: 10.1371/journal.pgen.1001189.

34.

Population genetics of fungal and oomycete effectors involved in gene-for-gene interactions.

Stukenbrock EH, McDonald BA.

Mol Plant Microbe Interact. 2009 Apr;22(4):371-80. doi: 10.1094/MPMI-22-4-0371. Review.

35.

The origins of plant pathogens in agro-ecosystems.

Stukenbrock EH, McDonald BA.

Annu Rev Phytopathol. 2008;46:75-100. doi: 10.1146/annurev.phyto.010708.154114. Review.

PMID:
18680424
36.

Geographical variation and positive diversifying selection in the host-specific toxin SnToxA.

Stukenbrock EH, McDonald BA.

Mol Plant Pathol. 2007 May;8(3):321-32. doi: 10.1111/j.1364-3703.2007.00396.x.

PMID:
20507502
37.

Origin and domestication of the fungal wheat pathogen Mycosphaerella graminicola via sympatric speciation.

Stukenbrock EH, Banke S, Javan-Nikkhah M, McDonald BA.

Mol Biol Evol. 2007 Feb;24(2):398-411. Epub 2006 Nov 9.

PMID:
17095534
38.

Global migration patterns in the fungal wheat pathogen Phaeosphaeria nodorum.

Stukenbrock EH, Banke S, McDonald BA.

Mol Ecol. 2006 Sep;15(10):2895-904.

PMID:
16911209
39.

Emergence of a new disease as a result of interspecific virulence gene transfer.

Friesen TL, Stukenbrock EH, Liu Z, Meinhardt S, Ling H, Faris JD, Rasmussen JB, Solomon PS, McDonald BA, Oliver RP.

Nat Genet. 2006 Aug;38(8):953-6. Epub 2006 Jul 9.

PMID:
16832356
40.

Distribution of dominant arbuscular mycorrhizal fungi among five plant species in undisturbed vegetation of a coastal grassland.

Stukenbrock EH, Rosendahl S.

Mycorrhiza. 2005 Nov;15(7):497-503. Epub 2005 Apr 5.

PMID:
15809870
43.

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