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Items: 1 to 50 of 126

1.

High-Quality Draft Genome Sequence of the Causal Agent of the Current Panama Disease Epidemic.

Warmington RJ, Kay W, Jeffries A, O'Neill P, Farbos A, Moore K, Bebber DP, Studholme DJ.

Microbiol Resour Announc. 2019 Sep 5;8(36). pii: e00904-19. doi: 10.1128/MRA.00904-19.

2.

Genomics-informed molecular detection of Xanthomonas vasicola pv. vasculorum strains causing severe bacterial leaf streak of corn.

Stulberg M, Santillana G, Studholme DJ, Kasiborski B, Ortiz-Castro M, Broders K, Arias S, Block C, Munkvold GP, Rascoe J.

Phytopathology. 2019 May 20. doi: 10.1094/PHYTO-12-18-0453-R. [Epub ahead of print]

PMID:
31107148
3.

Brevibacillus laterosporus strains BGSP7, BGSP9 and BGSP11 isolated from silage produce broad spectrum multi-antimicrobials.

Miljkovic M, Jovanovic S, O'Connor PM, Mirkovic N, Jovcic B, Filipic B, Dinic M, Studholme DJ, Fira D, Cotter PD, Kojic M.

PLoS One. 2019 May 10;14(5):e0216773. doi: 10.1371/journal.pone.0216773. eCollection 2019.

4.

Improved method for genotyping the causative agent of crayfish plague (Aphanomyces astaci) based on mitochondrial DNA.

Minardi D, Studholme DJ, Oidtmann B, Pretto T, van der Giezen M.

Parasitology. 2019 Jul;146(8):1022-1029. doi: 10.1017/S0031182019000283. Epub 2019 Apr 12.

PMID:
30975238
5.

Genome Resequencing of Laboratory Stocks of Burkholderia pseudomallei K96243.

Wagley S, Scott AE, Ireland PM, Prior JL, Atkins TP, Bancroft GJ, Studholme DJ, Titball RW.

Microbiol Resour Announc. 2019 Feb 28;8(9). pii: e01529-18. doi: 10.1128/MRA.01529-18. eCollection 2019 Feb.

6.

A highly specific tool for identification of Xanthomonas vasicola pv. musacearum based on five Xvm-specific coding sequences.

Nakato GV, Wicker E, Coutinho TA, Mahuku G, Studholme DJ.

Heliyon. 2018 Dec 27;4(12):e01080. doi: 10.1016/j.heliyon.2018.e01080. eCollection 2018 Dec.

7.

Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species.

Michalopoulou VA, Vicente JG, Studholme DJ, Sarris PF.

Microbiol Resour Announc. 2018 Sep 27;7(12). pii: e00923-18. doi: 10.1128/MRA.00923-18. eCollection 2018 Sep.

8.

Genome sequencing of oomycete isolates from Chile supports the New Zealand origin of Phytophthora kernoviae and makes available the first Nothophytophthora sp. genome.

Studholme DJ, Panda P, Sanfuentes Von Stowasser E, González M, Hill R, Sambles C, Grant M, Williams NM, McDougal RL.

Mol Plant Pathol. 2019 Mar;20(3):423-431. doi: 10.1111/mpp.12765. Epub 2018 Dec 5.

9.

Publisher Correction: Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom.

Schaum CE, Buckling A, Smirnoff N, Studholme DJ, Yvon-Durocher G.

Nat Commun. 2018 Jul 13;9(1):2813. doi: 10.1038/s41467-018-05353-8.

10.

Identifying molecular markers suitable for Frl selection in tomato breeding.

Devran Z, Kahveci E, Hong Y, Studholme DJ, Tör M.

Theor Appl Genet. 2018 Oct;131(10):2099-2105. doi: 10.1007/s00122-018-3136-0. Epub 2018 Jul 7.

11.

Genome Sequence of Staphylococcus aureus Ex1, Isolated from a Patient with Spinal Osteomyelitis.

Morcrette H, Morgan MS, Farbos A, O'Neill P, Moore K, Titball RW, Studholme DJ.

Genome Announc. 2018 Jun 28;6(26). pii: e00623-18. doi: 10.1128/genomeA.00623-18.

12.

New genotyping method for the causative agent of crayfish plague (Aphanomyces astaci) based on whole genome data.

Minardi D, Studholme DJ, van der Giezen M, Pretto T, Oidtmann B.

J Invertebr Pathol. 2018 Jul;156:6-13. doi: 10.1016/j.jip.2018.06.002. Epub 2018 Jun 25.

PMID:
29953875
13.

Genome sequence data from 17 accessions of Ensete ventricosum, a staple food crop for millions in Ethiopia.

Yemataw Z, Muzemil S, Ambachew D, Tripathi L, Tesfaye K, Chala A, Farbos A, O'Neill P, Moore K, Grant M, Studholme DJ.

Data Brief. 2018 Mar 11;18:285-293. doi: 10.1016/j.dib.2018.03.026. eCollection 2018 Jun.

14.

Environmental fluctuations accelerate molecular evolution of thermal tolerance in a marine diatom.

Schaum CE, Buckling A, Smirnoff N, Studholme DJ, Yvon-Durocher G.

Nat Commun. 2018 Apr 30;9(1):1719. doi: 10.1038/s41467-018-03906-5. Erratum in: Nat Commun. 2018 Jul 13;9(1):2813.

15.

Coping with Environmental Eukaryotes; Identification of Pseudomonas syringae Genes during the Interaction with Alternative Hosts or Predators.

Dorati F, Barrett GA, Sanchez-Contreras M, Arseneault T, José MS, Studholme DJ, Murillo J, Caballero P, Waterfield NR, Arnold DL, Shaw LJ, Jackson RW.

Microorganisms. 2018 Apr 21;6(2). pii: E32. doi: 10.3390/microorganisms6020032.

16.

A Suppressor/Avirulence Gene Combination in Hyaloperonospora arabidopsidis Determines Race Specificity in Arabidopsis thaliana.

Woods-Tör A, Studholme DJ, Cevik V, Telli O, Holub EB, Tör M.

Front Plant Sci. 2018 Mar 1;9:265. doi: 10.3389/fpls.2018.00265. eCollection 2018.

17.

Ash leaf metabolomes reveal differences between trees tolerant and susceptible to ash dieback disease.

Sambles CM, Salmon DL, Florance H, Howard TP, Smirnoff N, Nielsen LR, McKinney LV, Kjær ED, Buggs RJA, Studholme DJ, Grant M.

Sci Data. 2017 Dec 19;4:170190. doi: 10.1038/sdata.2017.190.

18.

Morphological Variation and Inter-Relationships of Quantitative Traits in Enset (Ensete ventricosum (welw.) Cheesman) Germplasm from South and South-Western Ethiopia.

Yemataw Z, Chala A, Ambachew D, Studholme DJ, Grant MR, Tesfaye K.

Plants (Basel). 2017 Dec 6;6(4). pii: E56. doi: 10.3390/plants6040056.

19.

Pathogenic, phenotypic and molecular characterisation of Xanthomonas nasturtii sp. nov. and Xanthomonas floridensis sp. nov., new species of Xanthomonas associated with watercress production in Florida.

Vicente JG, Rothwell S, Holub EB, Studholme DJ.

Int J Syst Evol Microbiol. 2017 Sep;67(9):3645-3654. doi: 10.1099/ijsem.0.002189. Epub 2017 Aug 25.

PMID:
28840805
20.

Tpc1 is an important Zn(II)2Cys6 transcriptional regulator required for polarized growth and virulence in the rice blast fungus.

Galhano R, Illana A, Ryder LS, Rodríguez-Romero J, Demuez M, Badaruddin M, Martinez-Rocha AL, Soanes DM, Studholme DJ, Talbot NJ, Sesma A.

PLoS Pathog. 2017 Jul 24;13(7):e1006516. doi: 10.1371/journal.ppat.1006516. eCollection 2017 Jul.

21.

Metagenomic analysis of the complex microbial consortium associated with cultures of the oil-rich alga Botryococcus braunii.

Sambles C, Moore K, Lux TM, Jones K, Littlejohn GR, Gouveia JD, Aves SJ, Studholme DJ, Lee R, Love J.

Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.482. Epub 2017 Jun 28.

22.

Population-genomic insights into emergence, crop adaptation and dissemination of Pseudomonas syringae pathogens.

Monteil CL, Yahara K, Studholme DJ, Mageiros L, Méric G, Swingle B, Morris CE, Vinatzer BA, Sheppard SK.

Microb Genom. 2016 Oct 21;2(10):e000089. doi: 10.1099/mgen.0.000089. eCollection 2016 Oct.

23.

Genome sequences of 12 isolates of the EU1 lineage of Phytophthora ramorum, a fungus-like pathogen that causes extensive damage and mortality to a wide range of trees and other plants.

Turner J, O'Neill P, Grant M, Mumford RA, Thwaites R, Studholme DJ.

Genom Data. 2017 Feb 6;12:17-21. doi: 10.1016/j.gdata.2017.02.006. eCollection 2017 Jun.

24.

Genome sequence and genetic diversity of European ash trees.

Sollars ES, Harper AL, Kelly LJ, Sambles CM, Ramirez-Gonzalez RH, Swarbreck D, Kaithakottil G, Cooper ED, Uauy C, Havlickova L, Worswick G, Studholme DJ, Zohren J, Salmon DL, Clavijo BJ, Li Y, He Z, Fellgett A, McKinney LV, Nielsen LR, Douglas GC, Kjær ED, Downie JA, Boshier D, Lee S, Clark J, Grant M, Bancroft I, Caccamo M, Buggs RJ.

Nature. 2017 Jan 12;541(7636):212-216. doi: 10.1038/nature20786. Epub 2016 Dec 26.

PMID:
28024298
25.

Comparative genomics of an endophytic Pseudomonas putida isolated from mango orchard.

Asif H, Studholme DJ, Khan A, Aurongzeb M, Khan IA, Azim MK.

Genet Mol Biol. 2016 Jul-Sep;39(3):465-73. doi: 10.1590/1678-4685-GMB-2015-0186. Epub 2016 Jul 7.

26.

Transcriptional reprogramming underpins enhanced plant growth promotion by the biocontrol fungus Trichoderma hamatum GD12 during antagonistic interactions with Sclerotinia sclerotiorum in soil.

Shaw S, Le Cocq K, Paszkiewicz K, Moore K, Winsbury R, de Torres Zabala M, Studholme DJ, Salmon D, Thornton CR, Grant MR.

Mol Plant Pathol. 2016 Dec;17(9):1425-1441. doi: 10.1111/mpp.12429. Epub 2016 Jul 24.

27.

Genome Update. Let the consumer beware: Streptomyces genome sequence quality.

Studholme DJ.

Microb Biotechnol. 2016 Jan;9(1):3-7. doi: 10.1111/1751-7915.12344.

28.

Genome sequences of six Phytophthora species associated with forests in New Zealand.

Studholme DJ, McDougal RL, Sambles C, Hansen E, Hardy G, Grant M, Ganley RJ, Williams NM.

Genom Data. 2015 Nov 22;7:54-6. doi: 10.1016/j.gdata.2015.11.015. eCollection 2016 Mar.

29.

Draft Genome Sequence of Pseudomonas syringae pv. syringae ALF3 Isolated from Alfalfa.

Harrison J, Dornbusch MR, Samac D, Studholme DJ.

Genome Announc. 2016 Feb 11;4(1). pii: e01722-15. doi: 10.1128/genomeA.01722-15.

30.

Draft Genome Sequences of Two Strains of Xanthomonas arboricola pv. celebensis Isolated from Banana Plants.

Harrison J, Grant MR, Studholme DJ.

Genome Announc. 2016 Feb 11;4(1). pii: e01705-15. doi: 10.1128/genomeA.01705-15.

32.

Assessing the performance of the Oxford Nanopore Technologies MinION.

Laver T, Harrison J, O'Neill PA, Moore K, Farbos A, Paszkiewicz K, Studholme DJ.

Biomol Detect Quantif. 2015 Mar;3:1-8.

33.

Draft genome sequences of Phytophthora kernoviae and Phytophthora ramorum lineage EU2 from Scotland.

Sambles C, Schlenzig A, O'Neill P, Grant M, Studholme DJ.

Genom Data. 2015 Sep 22;6:193-4. doi: 10.1016/j.gdata.2015.09.010. eCollection 2015 Dec.

34.

Draft genome sequences of seven isolates of Phytophthora ramorum EU2 from Northern Ireland.

Mata Saez Lde L, McCracken AR, Cooke LR, O'Neill P, Grant M, Studholme DJ.

Genom Data. 2015 Sep 22;6:191-2. doi: 10.1016/j.gdata.2015.09.009. eCollection 2015 Dec.

35.

New and Improved Techniques for the Study of Pathogenic Fungi.

Cairns TC, Studholme DJ, Talbot NJ, Haynes K.

Trends Microbiol. 2016 Jan;24(1):35-50. doi: 10.1016/j.tim.2015.09.008. Epub 2015 Nov 5. Review.

PMID:
26549580
36.

Genome sequencing reveals a new lineage associated with lablab bean and genetic exchange between Xanthomonas axonopodis pv. phaseoli and Xanthomonas fuscans subsp. fuscans.

Aritua V, Harrison J, Sapp M, Buruchara R, Smith J, Studholme DJ.

Front Microbiol. 2015 Oct 7;6:1080. doi: 10.3389/fmicb.2015.01080. eCollection 2015.

37.

Genome analyses of the sunflower pathogen Plasmopara halstedii provide insights into effector evolution in downy mildews and Phytophthora.

Sharma R, Xia X, Cano LM, Evangelisti E, Kemen E, Judelson H, Oome S, Sambles C, van den Hoogen DJ, Kitner M, Klein J, Meijer HJ, Spring O, Win J, Zipper R, Bode HB, Govers F, Kamoun S, Schornack S, Studholme DJ, Van den Ackerveken G, Thines M.

BMC Genomics. 2015 Oct 5;16:741. doi: 10.1186/s12864-015-1904-7.

38.

Rapid, specific, simple, in-field detection of Xanthomonas campestris pathovar musacearum by loop-mediated isothermal amplification.

Hodgetts J, Hall J, Karamura G, Grant M, Studholme DJ, Boonham N, Karamura E, Smith JJ.

J Appl Microbiol. 2015 Dec;119(6):1651-8. doi: 10.1111/jam.12959.

39.

Construction and high-throughput phenotypic screening ofZymoseptoria tritici over-expression strains.

Cairns TC, Sidhu YS, Chaudhari YK, Talbot NJ, Studholme DJ, Haynes K.

Fungal Genet Biol. 2015 Jun;79:110-7. doi: 10.1016/j.fgb.2015.04.013.

40.

Exploitation of sulfonylurea resistance marker and non-homologous end joining mutants for functional analysis in Zymoseptoria tritici.

Sidhu YS, Cairns TC, Chaudhari YK, Usher J, Talbot NJ, Studholme DJ, Csukai M, Haynes K.

Fungal Genet Biol. 2015 Jun;79:102-9. doi: 10.1016/j.fgb.2015.04.015.

41.

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P.

Genome Res. 2015 Apr;25(4):608. No abstract available.

42.

Development of molecular markers tightly linked to Pvr4 gene in pepper using next-generation sequencing.

Devran Z, Kahveci E, Özkaynak E, Studholme DJ, Tör M.

Mol Breed. 2015;35(4):101. Epub 2015 Mar 17.

43.

Evolution. Evolutionary resurrection of flagellar motility via rewiring of the nitrogen regulation system.

Taylor TB, Mulley G, Dills AH, Alsohim AS, McGuffin LJ, Studholme DJ, Silby MW, Brockhurst MA, Johnson LJ, Jackson RW.

Science. 2015 Feb 27;347(6225):1014-7. doi: 10.1126/science.1259145.

44.

Genome-Enabled Phylogeographic Investigation of the Quarantine Pathogen Ralstonia solanacearum Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors.

Clarke CR, Studholme DJ, Hayes B, Runde B, Weisberg A, Cai R, Wroblewski T, Daunay MC, Wicker E, Castillo JA, Vinatzer BA.

Phytopathology. 2015 May;105(5):597-607. doi: 10.1094/PHYTO-12-14-0373-R.

45.

The draft genome sequence of Xanthomonas species strain Nyagatare, isolated from diseased bean in Rwanda.

Aritua V, Musoni A, Kabeja A, Butare L, Mukamuhirwa F, Gahakwa D, Kato F, Abang MM, Buruchara R, Sapp M, Harrison J, Studholme DJ, Smith J.

FEMS Microbiol Lett. 2015 Feb;362(4). doi: 10.1093/femsle/fnu055. Epub 2014 Dec 11.

46.

Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors.

Wasukira A, Coulter M, Al-Sowayeh N, Thwaites R, Paszkiewicz K, Kubiriba J, Smith J, Grant M, Studholme DJ.

Pathogens. 2014 Mar 18;3(1):211-37. doi: 10.3390/pathogens3010211.

47.

Assessing the accuracy of quantitative molecular microbial profiling.

O'Sullivan DM, Laver T, Temisak S, Redshaw N, Harris KA, Foy CA, Studholme DJ, Huggett JF.

Int J Mol Sci. 2014 Nov 21;15(11):21476-91. doi: 10.3390/ijms151121476.

48.

Differences in carbon source utilisation distinguish Campylobacter jejuni from Campylobacter coli.

Wagley S, Newcombe J, Laing E, Yusuf E, Sambles CM, Studholme DJ, La Ragione RM, Titball RW, Champion OL.

BMC Microbiol. 2014 Oct 28;14:262. doi: 10.1186/s12866-014-0262-y.

49.

Draft genome sequence of Xanthomonas axonopodis pathovar vasculorum NCPPB 900.

Harrison J, Studholme DJ.

FEMS Microbiol Lett. 2014 Nov;360(2):113-6.

50.

Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles.

Nandi T, Holden MT, Didelot X, Mehershahi K, Boddey JA, Beacham I, Peak I, Harting J, Baybayan P, Guo Y, Wang S, How LC, Sim B, Essex-Lopresti A, Sarkar-Tyson M, Nelson M, Smither S, Ong C, Aw LT, Hoon CH, Michell S, Studholme DJ, Titball R, Chen SL, Parkhill J, Tan P.

Genome Res. 2015 Jan;25(1):129-41. doi: 10.1101/gr.177543.114. Epub 2014 Sep 18. Erratum in: Genome Res. 2015 Apr;25(4):608. Holden, Mathew T G [corrected to Holden, Matthew T G].

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