Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 20

1.

Single-cell immune profiling reveals new insights into colorectal cancer.

Lönnberg T, Stubbington MJ.

Immunol Cell Biol. 2019 Feb 21. doi: 10.1111/imcb.12240. [Epub ahead of print] No abstract available.

PMID:
30791147
2.

Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data.

Lindeman I, Stubbington MJT.

Methods Mol Biol. 2019;1935:223-249. doi: 10.1007/978-1-4939-9057-3_15.

PMID:
30758830
3.

Single-cell reconstruction of the early maternal-fetal interface in humans.

Vento-Tormo R, Efremova M, Botting RA, Turco MY, Vento-Tormo M, Meyer KB, Park JE, Stephenson E, Polański K, Goncalves A, Gardner L, Holmqvist S, Henriksson J, Zou A, Sharkey AM, Millar B, Innes B, Wood L, Wilbrey-Clark A, Payne RP, Ivarsson MA, Lisgo S, Filby A, Rowitch DH, Bulmer JN, Wright GJ, Stubbington MJT, Haniffa M, Moffett A, Teichmann SA.

Nature. 2018 Nov;563(7731):347-353. doi: 10.1038/s41586-018-0698-6. Epub 2018 Nov 14.

PMID:
30429548
4.

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq.

Lindeman I, Emerton G, Mamanova L, Snir O, Polanski K, Qiao SW, Sollid LM, Teichmann SA, Stubbington MJT.

Nat Methods. 2018 Aug;15(8):563-565. doi: 10.1038/s41592-018-0082-3. No abstract available.

PMID:
30065371
5.

The Human Cell Atlas.

Regev A, Teichmann SA, Lander ES, Amit I, Benoist C, Birney E, Bodenmiller B, Campbell P, Carninci P, Clatworthy M, Clevers H, Deplancke B, Dunham I, Eberwine J, Eils R, Enard W, Farmer A, Fugger L, Göttgens B, Hacohen N, Haniffa M, Hemberg M, Kim S, Klenerman P, Kriegstein A, Lein E, Linnarsson S, Lundberg E, Lundeberg J, Majumder P, Marioni JC, Merad M, Mhlanga M, Nawijn M, Netea M, Nolan G, Pe'er D, Phillipakis A, Ponting CP, Quake S, Reik W, Rozenblatt-Rosen O, Sanes J, Satija R, Schumacher TN, Shalek A, Shapiro E, Sharma P, Shin JW, Stegle O, Stratton M, Stubbington MJT, Theis FJ, Uhlen M, van Oudenaarden A, Wagner A, Watt F, Weissman J, Wold B, Xavier R, Yosef N; Human Cell Atlas Meeting Participants.

Elife. 2017 Dec 5;6. pii: e27041. doi: 10.7554/eLife.27041.

6.

The Human Cell Atlas: Technical approaches and challenges.

Hon CC, Shin JW, Carninci P, Stubbington MJT.

Brief Funct Genomics. 2018 Jul 1;17(4):283-294. doi: 10.1093/bfgp/elx029.

7.

The Human Cell Atlas: from vision to reality.

Rozenblatt-Rosen O, Stubbington MJT, Regev A, Teichmann SA.

Nature. 2017 Oct 18;550(7677):451-453. doi: 10.1038/550451a. No abstract available.

PMID:
29072289
8.

Single-cell transcriptomics to explore the immune system in health and disease.

Stubbington MJT, Rozenblatt-Rosen O, Regev A, Teichmann SA.

Science. 2017 Oct 6;358(6359):58-63. doi: 10.1126/science.aan6828. Review.

9.

Circulating and Tissue-Resident CD4+ T Cells With Reactivity to Intestinal Microbiota Are Abundant in Healthy Individuals and Function Is Altered During Inflammation.

Hegazy AN, West NR, Stubbington MJT, Wendt E, Suijker KIM, Datsi A, This S, Danne C, Campion S, Duncan SH, Owens BMJ, Uhlig HH, McMichael A; Oxford IBD Cohort Investigators, Bergthaler A, Teichmann SA, Keshav S, Powrie F.

Gastroenterology. 2017 Nov;153(5):1320-1337.e16. doi: 10.1053/j.gastro.2017.07.047. Epub 2017 Aug 4.

10.

Aging increases cell-to-cell transcriptional variability upon immune stimulation.

Martinez-Jimenez CP, Eling N, Chen HC, Vallejos CA, Kolodziejczyk AA, Connor F, Stojic L, Rayner TF, Stubbington MJT, Teichmann SA, de la Roche M, Marioni JC, Odom DT.

Science. 2017 Mar 31;355(6332):1433-1436. doi: 10.1126/science.aah4115.

11.

Single-cell RNA-seq and computational analysis using temporal mixture modelling resolves Th1/Tfh fate bifurcation in malaria.

Lönnberg T, Svensson V, James KR, Fernandez-Ruiz D, Sebina I, Montandon R, Soon MS, Fogg LG, Nair AS, Liligeto U, Stubbington MJ, Ly LH, Bagger FO, Zwiessele M, Lawrence ND, Souza-Fonseca-Guimaraes F, Bunn PT, Engwerda CR, Heath WR, Billker O, Stegle O, Haque A, Teichmann SA.

Sci Immunol. 2017 Mar 3;2(9). pii: eaal2192. doi: 10.1126/sciimmunol.aal2192. Erratum in: Sci Immunol. 2018 Mar 9;3(21):.

12.

Are cells from a snowman realistic? Cryopreserved tissues as a source for single-cell RNA-sequencing experiments.

Vieira Braga FA, Teichmann SA, Stubbington MJ.

Genome Biol. 2017 Mar 24;18(1):54. doi: 10.1186/s13059-017-1192-4. Review.

13.

Single-cell transcriptome analysis of fish immune cells provides insight into the evolution of vertebrate immune cell types.

Carmona SJ, Teichmann SA, Ferreira L, Macaulay IC, Stubbington MJ, Cvejic A, Gfeller D.

Genome Res. 2017 Mar;27(3):451-461. doi: 10.1101/gr.207704.116. Epub 2017 Jan 13.

14.

Intrinsic transcriptional heterogeneity in B cells controls early class switching to IgE.

Wu YL, Stubbington MJ, Daly M, Teichmann SA, Rada C.

J Exp Med. 2017 Jan;214(1):183-196. doi: 10.1084/jem.20161056. Epub 2016 Dec 19.

15.

Single-cell analysis at the threshold.

Chen X, Love JC, Navin NE, Pachter L, Stubbington MJ, Svensson V, Sweedler JV, Teichmann SA.

Nat Biotechnol. 2016 Nov 8;34(11):1111-1118. doi: 10.1038/nbt.3721. No abstract available.

PMID:
27824834
16.

Two Mutually Exclusive Local Chromatin States Drive Efficient V(D)J Recombination.

Bolland DJ, Koohy H, Wood AL, Matheson LS, Krueger F, Stubbington MJ, Baizan-Edge A, Chovanec P, Stubbs BA, Tabbada K, Andrews SR, Spivakov M, Corcoran AE.

Cell Rep. 2016 Jun 14;15(11):2475-87. doi: 10.1016/j.celrep.2016.05.020. Epub 2016 Jun 2.

17.

T cell fate and clonality inference from single-cell transcriptomes.

Stubbington MJT, Lönnberg T, Proserpio V, Clare S, Speak AO, Dougan G, Teichmann SA.

Nat Methods. 2016 Apr;13(4):329-332. doi: 10.1038/nmeth.3800. Epub 2016 Mar 7.

18.

The Regulatory T Cell Lineage Factor Foxp3 Regulates Gene Expression through Several Distinct Mechanisms Mostly Independent of Direct DNA Binding.

Xie X, Stubbington MJ, Nissen JK, Andersen KG, Hebenstreit D, Teichmann SA, Betz AG.

PLoS Genet. 2015 Jun 24;11(6):e1005251. doi: 10.1371/journal.pgen.1005251. eCollection 2015 Jun.

19.

An atlas of mouse CD4(+) T cell transcriptomes.

Stubbington MJ, Mahata B, Svensson V, Deonarine A, Nissen JK, Betz AG, Teichmann SA.

Biol Direct. 2015 Apr 3;10:14. doi: 10.1186/s13062-015-0045-x.

20.

Non-coding transcription and large-scale nuclear organisation of immunoglobulin recombination.

Stubbington MJ, Corcoran AE.

Curr Opin Genet Dev. 2013 Apr;23(2):81-8. doi: 10.1016/j.gde.2013.01.001. Epub 2013 Feb 22. Review.

PMID:
23434028

Supplemental Content

Loading ...
Support Center