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Items: 43

1.

A heritable subset of the core rumen microbiome dictates dairy cow productivity and emissions.

Wallace RJ, Sasson G, Garnsworthy PC, Tapio I, Gregson E, Bani P, Huhtanen P, Bayat AR, Strozzi F, Biscarini F, Snelling TJ, Saunders N, Potterton SL, Craigon J, Minuti A, Trevisi E, Callegari ML, Cappelli FP, Cabezas-Garcia EH, Vilkki J, Pinares-Patino C, Fliegerová KO, Mrázek J, Sechovcová H, Kopečný J, Bonin A, Boyer F, Taberlet P, Kokou F, Halperin E, Williams JL, Shingfield KJ, Mizrahi I.

Sci Adv. 2019 Jul 3;5(7):eaav8391. doi: 10.1126/sciadv.aav8391. eCollection 2019 Jul.

2.

Scalable Workflows and Reproducible Data Analysis for Genomics.

Strozzi F, Janssen R, Wurmus R, Crusoe MR, Githinji G, Di Tommaso P, Belhachemi D, Möller S, Smant G, de Ligt J, Prins P.

Methods Mol Biol. 2019;1910:723-745. doi: 10.1007/978-1-4939-9074-0_24.

PMID:
31278683
3.

Characterization of microRNA in the follicular fluid of patients undergoing assisted reproductive technology.

Mencaglia L, Cerboneschi M, Ciociola F, Ricci S, Mancioppi I, Ambrosino V, Ferrandi C, Strozzi F, Piffanelli P, Grasselli A.

J Biol Regul Homeost Agents. 2019 May-Jun;33(3):946-956.

PMID:
31190512
4.

Exome sequences and multi-environment field trials elucidate the genetic basis of adaptation in barley.

Bustos-Korts D, Dawson IK, Russell J, Tondelli A, Guerra D, Ferrandi C, Strozzi F, Nicolazzi EL, Molnar-Lang M, Ozkan H, Megyeri M, Miko P, Çakır E, Yakışır E, Trabanco N, Delbono S, Kyriakidis S, Booth A, Cammarano D, Mascher M, Werner P, Cattivelli L, Rossini L, Stein N, Kilian B, Waugh R, van Eeuwijk FA.

Plant J. 2019 Sep;99(6):1172-1191. doi: 10.1111/tpj.14414. Epub 2019 Jun 27.

5.

Genome assembly and transcriptome resource for river buffalo, Bubalus bubalis (2n = 50).

Williams JL, Iamartino D, Pruitt KD, Sonstegard T, Smith TPL, Low WY, Biagini T, Bomba L, Capomaccio S, Castiglioni B, Coletta A, Corrado F, Ferré F, Iannuzzi L, Lawley C, Macciotta N, McClure M, Mancini G, Matassino D, Mazza R, Milanesi M, Moioli B, Morandi N, Ramunno L, Peretti V, Pilla F, Ramelli P, Schroeder S, Strozzi F, Thibaud-Nissen F, Zicarelli L, Ajmone-Marsan P, Valentini A, Chillemi G, Zimin A.

Gigascience. 2017 Oct 1;6(10):1-6. doi: 10.1093/gigascience/gix088.

6.

Johne's disease in cattle: an in vitro model to study early response to infection of Mycobacterium avium subsp. paratuberculosis using RNA-seq.

Marino R, Capoferri R, Panelli S, Minozzi G, Strozzi F, Trevisi E, Snel GGM, Ajmone-Marsan P, Williams JL.

Mol Immunol. 2017 Nov;91:259-271. doi: 10.1016/j.molimm.2017.08.017. Epub 2017 Oct 5.

PMID:
28988040
7.

Erratum to: Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism.

Wallace RJ, Snelling TJ, McCartney CA, Tapio I, Strozzi F.

Genet Sel Evol. 2017 Feb 28;49(1):27. doi: 10.1186/s12711-017-0304-7. No abstract available.

8.

The ruminal microbiome associated with methane emissions from ruminant livestock.

Tapio I, Snelling TJ, Strozzi F, Wallace RJ.

J Anim Sci Biotechnol. 2017 Jan 19;8:7. doi: 10.1186/s40104-017-0141-0. eCollection 2017. Review.

9.

QTL mapping and candidate genes for resistance to Fusarium ear rot and fumonisin contamination in maize.

Maschietto V, Colombi C, Pirona R, Pea G, Strozzi F, Marocco A, Rossini L, Lanubile A.

BMC Plant Biol. 2017 Jan 21;17(1):20. doi: 10.1186/s12870-017-0970-1.

10.

Application of meta-omics techniques to understand greenhouse gas emissions originating from ruminal metabolism.

Wallace RJ, Snelling TJ, McCartney CA, Tapio I, Strozzi F.

Genet Sel Evol. 2017 Jan 16;49(1):9. doi: 10.1186/s12711-017-0285-6. Review. Erratum in: Genet Sel Evol. 2017 Feb 28;49(1):27.

11.

Elucidating the genetic basis of an oligogenic birth defect using whole genome sequence data in a non-model organism, Bubalus bubalis.

Whitacre LK, Hoff JL, Schnabel RD, Albarella S, Ciotola F, Peretti V, Strozzi F, Ferrandi C, Ramunno L, Sonstegard TS, Williams JL, Taylor JF, Decker JE.

Sci Rep. 2017 Jan 3;7:39719. doi: 10.1038/srep39719.

12.

The Possible Innovative Use of Bifidobacterium longum W11 in Association With Rifaximin: A New Horizon for Combined Approach?

Graziano T, Amoruso A, Nicola S, Deidda F, Allesina S, Pane M, Piffanelli P, Strozzi F, Mogna L, Del Piano M.

J Clin Gastroenterol. 2016 Nov/Dec;50 Suppl 2, Proceedings from the 8th Probiotics, Prebiotics & New Foods for Microbiota and Human Health meeting held in Rome, Italy on September 13-15, 2015:S153-S156. Erratum in: J Clin Gastroenterol. 2017 Jan;51(1):89.

PMID:
27741162
13.

Profiling bovine blastocyst microRNAs using deep sequencing.

Pasquariello R, Fernandez-Fuertes B, Strozzi F, Pizzi F, Mazza R, Lonergan P, Gandolfi F, Williams JL.

Reprod Fertil Dev. 2017 Aug;29(8):1545-1555. doi: 10.1071/RD16110.

PMID:
27623773
14.

Transcriptome analysis of Pseudomonas mediterranea and P. corrugata plant pathogens during accumulation of medium-chain-length PHAs by glycerol bioconversion.

Licciardello G, Ferraro R, Russo M, Strozzi F, Catara AF, Bella P, Catara V.

N Biotechnol. 2017 Jul 25;37(Pt A):39-47. doi: 10.1016/j.nbt.2016.07.006. Epub 2016 Jul 18.

PMID:
27445200
15.

FALDO: a semantic standard for describing the location of nucleotide and protein feature annotation.

Bolleman JT, Mungall CJ, Strozzi F, Baran J, Dumontier M, Bonnal RJ, Buels R, Hoehndorf R, Fujisawa T, Katayama T, Cock PJ.

J Biomed Semantics. 2016 Jun 13;7:39. doi: 10.1186/s13326-016-0067-z.

16.

Distinct lncRNA transcriptional fingerprints characterize progressive stages of multiple myeloma.

Ronchetti D, Agnelli L, Taiana E, Galletti S, Manzoni M, Todoerti K, Musto P, Strozzi F, Neri A.

Oncotarget. 2016 Mar 22;7(12):14814-30. doi: 10.18632/oncotarget.7442.

17.

RNA sequencing-based analysis of the spleen transcriptome following infectious bronchitis virus infection of chickens selected for different mannose-binding lectin serum concentrations.

Hamzić E, Kjærup RB, Mach N, Minozzi G, Strozzi F, Gualdi V, Williams JL, Chen J, Wattrang E, Buitenhuis B, Juul-Madsen HR, Dalgaard TS.

BMC Genomics. 2016 Jan 27;17:82. doi: 10.1186/s12864-016-2403-1.

18.

Expression of genes involved in the T cell signalling pathway in circulating immune cells of cattle 24 months following oral challenge with Bovine Amyloidotic Spongiform Encephalopathy (BASE).

Trovato A, Panelli S, Strozzi F, Cambulli C, Barbieri I, Martinelli N, Lombardi G, Capoferri R, Williams JL.

BMC Vet Res. 2015 May 9;11:105. doi: 10.1186/s12917-015-0412-y.

19.

SNPchiMp v.3: integrating and standardizing single nucleotide polymorphism data for livestock species.

Nicolazzi EL, Caprera A, Nazzicari N, Cozzi P, Strozzi F, Lawley C, Pirani A, Soans C, Brew F, Jorjani H, Evans G, Simpson B, Tosser-Klopp G, Brauning R, Williams JL, Stella A.

BMC Genomics. 2015 Apr 10;16:283. doi: 10.1186/s12864-015-1497-1.

20.

Community-driven development for computational biology at Sprints, Hackathons and Codefests.

Möller S, Afgan E, Banck M, Bonnal RJ, Booth T, Chilton J, Cock PJ, Gumbel M, Harris N, Holland R, Kalaš M, Kaján L, Kibukawa E, Powel DR, Prins P, Quinn J, Sallou O, Strozzi F, Seemann T, Sloggett C, Soiland-Reyes S, Spooner W, Steinbiss S, Tille A, Travis AJ, Guimera R, Katayama T, Chapman BA.

BMC Bioinformatics. 2014;15 Suppl 14:S7. doi: 10.1186/1471-2105-15-S14-S7. Epub 2014 Nov 27.

21.

A unique mutation in a MYB gene cosegregates with the nectarine phenotype in peach.

Vendramin E, Pea G, Dondini L, Pacheco I, Dettori MT, Gazza L, Scalabrin S, Strozzi F, Tartarini S, Bassi D, Verde I, Rossini L.

PLoS One. 2014 Mar 3;9(3):e90574. doi: 10.1371/journal.pone.0090574. eCollection 2014. Erratum in: PLoS One. 2014;9(10):e112032.

22.

SNPchiMp: a database to disentangle the SNPchip jungle in bovine livestock.

Nicolazzi EL, Picciolini M, Strozzi F, Schnabel RD, Lawley C, Pirani A, Brew F, Stella A.

BMC Genomics. 2014 Feb 11;15:123. doi: 10.1186/1471-2164-15-123.

23.

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Katayama T, Wilkinson MD, Aoki-Kinoshita KF, Kawashima S, Yamamoto Y, Yamaguchi A, Okamoto S, Kawano S, Kim JD, Wang Y, Wu H, Kano Y, Ono H, Bono H, Kocbek S, Aerts J, Akune Y, Antezana E, Arakawa K, Aranda B, Baran J, Bolleman J, Bonnal RJ, Buttigieg PL, Campbell MP, Chen YA, Chiba H, Cock PJ, Cohen KB, Constantin A, Duck G, Dumontier M, Fujisawa T, Fujiwara T, Goto N, Hoehndorf R, Igarashi Y, Itaya H, Ito M, Iwasaki W, Kalaš M, Katoda T, Kim T, Kokubu A, Komiyama Y, Kotera M, Laibe C, Lapp H, Lütteke T, Marshall MS, Mori T, Mori H, Morita M, Murakami K, Nakao M, Narimatsu H, Nishide H, Nishimura Y, Nystrom-Persson J, Ogishima S, Okamura Y, Okuda S, Oshita K, Packer NH, Prins P, Ranzinger R, Rocca-Serra P, Sansone S, Sawaki H, Shin SH, Splendiani A, Strozzi F, Tadaka S, Toukach P, Uchiyama I, Umezaki M, Vos R, Whetzel PL, Yamada I, Yamasaki C, Yamashita R, York WS, Zmasek CM, Kawamoto S, Takagi T.

J Biomed Semantics. 2014 Feb 5;5(1):5. doi: 10.1186/2041-1480-5-5.

24.

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis.

Haas BJ, Papanicolaou A, Yassour M, Grabherr M, Blood PD, Bowden J, Couger MB, Eccles D, Li B, Lieber M, MacManes MD, Ott M, Orvis J, Pochet N, Strozzi F, Weeks N, Westerman R, William T, Dewey CN, Henschel R, LeDuc RD, Friedman N, Regev A.

Nat Protoc. 2013 Aug;8(8):1494-512. doi: 10.1038/nprot.2013.084. Epub 2013 Jul 11.

25.

Transcript profiling of common bean nodules subjected to oxidative stress.

Ramírez M, Guillén G, Fuentes SI, Iñiguez LP, Aparicio-Fabre R, Zamorano-Sánchez D, Encarnación-Guevara S, Panzeri D, Castiglioni B, Cremonesi P, Strozzi F, Stella A, Girard L, Sparvoli F, Hernández G.

Physiol Plant. 2013 Nov;149(3):389-407. doi: 10.1111/ppl.12040. Epub 2013 Mar 28.

PMID:
23432573
26.

Common bean (Phaseolus vulgaris L.) PvTIFY orchestrates global changes in transcript profile response to jasmonate and phosphorus deficiency.

Aparicio-Fabre R, Guillén G, Loredo M, Arellano J, Valdés-López O, Ramírez M, Iñiguez LP, Panzeri D, Castiglioni B, Cremonesi P, Strozzi F, Stella A, Girard L, Sparvoli F, Hernández G.

BMC Plant Biol. 2013 Feb 13;13:26. doi: 10.1186/1471-2229-13-26.

27.

Response of the goat mammary gland to infection with Staphylococcus aureus revealed by gene expression profiling in milk somatic and white blood cells.

Cremonesi P, Capoferri R, Pisoni G, Del Corvo M, Strozzi F, Rupp R, Caillat H, Modesto P, Moroni P, Williams JL, Castiglioni B, Stella A.

BMC Genomics. 2012 Oct 9;13:540. doi: 10.1186/1471-2164-13-540.

28.

Meta-analysis of two genome-wide association studies of bovine paratuberculosis.

Minozzi G, Williams JL, Stella A, Strozzi F, Luini M, Settles ML, Taylor JF, Whitlock RH, Zanella R, Neibergs HL.

PLoS One. 2012;7(3):e32578. doi: 10.1371/journal.pone.0032578. Epub 2012 Mar 2.

29.

Biogem: an effective tool-based approach for scaling up open source software development in bioinformatics.

Bonnal RJ, Aerts J, Githinji G, Goto N, MacLean D, Miller CA, Mishima H, Pagani M, Ramirez-Gonzalez R, Smant G, Strozzi F, Syme R, Vos R, Wennblom TJ, Woodcroft BJ, Katayama T, Prins P.

Bioinformatics. 2012 Apr 1;28(7):1035-7. doi: 10.1093/bioinformatics/bts080. Epub 2012 Feb 12.

30.

Genome wide scan for somatic cell counts in holstein bulls.

Minozzi G, Nicolazzi EL, Strozzi F, Stella A, Negrini R, Ajmone-Marsan P, Williams JL.

BMC Proc. 2011 Jun 3;5 Suppl 4:S17. doi: 10.1186/1753-6561-5-S4-S17.

31.

A Ruby API to query the Ensembl database for genomic features.

Strozzi F, Aerts J.

Bioinformatics. 2011 Apr 1;27(7):1013-4. doi: 10.1093/bioinformatics/btr050. Epub 2011 Jan 28.

32.

Analysis of gene expression in white blood cells of cattle orally challenged with bovine amyloidotic spongiform encephalopathy.

Panelli S, Strozzi F, Capoferri R, Barbieri I, Martinelli N, Capucci L, Lombardi G, Williams JL.

J Toxicol Environ Health A. 2011;74(2-4):96-102. doi: 10.1080/15287394.2011.529059.

PMID:
21218338
33.

Genetic loci involved in antibody response to Mycobacterium avium ssp. paratuberculosis in cattle.

Minozzi G, Buggiotti L, Stella A, Strozzi F, Luini M, Williams JL.

PLoS One. 2010 Jun 15;5(6):e11117. doi: 10.1371/journal.pone.0011117.

34.

The other side of comparative genomics: genes with no orthologs between the cow and other mammalian species.

Mazza R, Strozzi F, Caprera A, Ajmone-Marsan P, Williams JL.

BMC Genomics. 2009 Dec 14;10:604. doi: 10.1186/1471-2164-10-604.

35.

Annotation of 390 bovine miRNA genes by sequence similarity with other species.

Strozzi F, Mazza R, Malinverni R, Williams JL.

Anim Genet. 2009 Feb;40(1):125. doi: 10.1111/j.1365-2052.2008.01780.x. Epub 2008 Oct 20. No abstract available.

PMID:
18945293
36.

[Conservative surgery and vaccino-prophylaxis in the prevention of post-splenectomy streptococcal sepsis: experimental study in the rat].

Nardone A, Pina ME, Bevilacqua G, Nespoli A, Strozzi F, Chiodin E, Vivanti R, Balsari A.

Chir Patol Sper. 1988 Apr;36(2):57-68. Review. Italian. No abstract available.

PMID:
3078785
37.

[Palatal collapse. Rapid expansion therapy (II)].

Silvestrini Biavati A, Strozzi F, Lagorio R, Crosignani P, Oniboni E, Loria V.

Parodontol Stomatol (Nuova). 1985 Sep-Dec;24(3):169-75. Italian. No abstract available.

PMID:
3939340
38.

[Palatal collapse. Etiopathogenetic classification and diagnosis (I)].

Silvestrini Biavati A, Lagorio R, Crosignani P, Strozzi F, Oniboni E, Loria V.

Parodontol Stomatol (Nuova). 1985 Sep-Dec;24(3):163-7. Italian. No abstract available.

PMID:
3939339
39.

[Variable behavior of IgA in the course of celiac disease].

Fasce L, Mangiante G, Strozzi F, Sala A.

Minerva Pediatr. 1979 Oct 15;31(19):1373-7. Italian. No abstract available.

PMID:
537599
40.

Complement fixation reaction in toxoplasmosis.

Cacciapuoti B, Ciceroni L, Pinto A, Strozzi F, Astolfi G.

Boll Ist Sieroter Milan. 1979 May 31;58(2):148-57.

PMID:
554618
41.

Purification and concentration of influenza inactivated viruses by continuous-flow zonal centrifugation.

Mistretta AP, Crovari-Cuneo P, Giacometti G, Sacchi G, Strozzi F.

Boll Ist Sieroter Milan. 1975;54(1):45-56.

PMID:
1125111
42.

[Adenovirus in the etiopathogenesis of acute enteritis in childhood].

Rosaschino F, Strozzi F, Franchi M.

Minerva Pediatr. 1970 Dec 8;22(49):2444-51. Italian. No abstract available.

PMID:
4322472
43.

[Detection and titration of rubella virus neutralizing antibodies in a group of blood donors in Milan].

Giacometti G, Strozzi F.

Prog Immunobiol Stand. 1970;4:661-5. Italian. No abstract available.

PMID:
5482203

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