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Items: 1 to 50 of 120

1.

Worm expulsion is independent of alterations in composition of the colonic bacteria that occur during experimental Hymenolepis diminuta-infection in mice.

Shute A, Wang A, Jayme TS, Strous M, McCoy KD, Buret AG, McKay DM.

Gut Microbes. 2020 Jan 13:1-14. doi: 10.1080/19490976.2019.1688065. [Epub ahead of print]

PMID:
31928118
2.

An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs.

Dong X, Strous M.

Front Genet. 2019 Oct 15;10:999. doi: 10.3389/fgene.2019.00999. eCollection 2019.

3.

Reply to: The use of a non-inferiority analysis to establish a safe timeframe for prehabilitation.

Strous MTA, Janssen-Heijnen MLG, Jeroen Vogelaar F.

Eur J Surg Oncol. 2019 Dec;45(12):2483. doi: 10.1016/j.ejso.2019.09.186. Epub 2019 Oct 4. No abstract available.

PMID:
31615706
4.

A shared core microbiome in soda lakes separated by large distances.

Zorz JK, Sharp C, Kleiner M, Gordon PMK, Pon RT, Dong X, Strous M.

Nat Commun. 2019 Sep 17;10(1):4230. doi: 10.1038/s41467-019-12195-5.

5.

Impact of therapeutic delay in colorectal cancer on overall survival and cancer recurrence - is there a safe timeframe for prehabilitation?

Strous MTA, Janssen-Heijnen MLG, Vogelaar FJ.

Eur J Surg Oncol. 2019 Dec;45(12):2295-2301. doi: 10.1016/j.ejso.2019.07.009. Epub 2019 Jul 4.

PMID:
31362842
6.

The Effect of Dissimilatory Manganese Reduction on Lactate Fermentation and Microbial Community Assembly.

Novotnik B, Zorz J, Bryant S, Strous M.

Front Microbiol. 2019 May 16;10:1007. doi: 10.3389/fmicb.2019.01007. eCollection 2019.

7.

Direct capture and conversion of CO2 from air by growing a cyanobacterial consortium at pH up to 11.2.

Ataeian M, Liu Y, Canon-Rubio KA, Nightingale M, Strous M, Vadlamani A.

Biotechnol Bioeng. 2019 Jul;116(7):1604-1611. doi: 10.1002/bit.26974. Epub 2019 Apr 8.

8.

More Is Not Always Better: Evaluation of 1D and 2D-LC-MS/MS Methods for Metaproteomics.

Hinzke T, Kouris A, Hughes RA, Strous M, Kleiner M.

Front Microbiol. 2019 Feb 14;10:238. doi: 10.3389/fmicb.2019.00238. eCollection 2019.

9.

Role of Extracellular Carbonic Anhydrase in Dissolved Inorganic Carbon Uptake in Alkaliphilic Phototrophic Biofilm.

Li T, Sharp CE, Ataeian M, Strous M, de Beer D.

Front Microbiol. 2018 Oct 22;9:2490. doi: 10.3389/fmicb.2018.02490. eCollection 2018.

10.

The rates and players of denitrification, dissimilatory nitrate reduction to ammonia (DNRA) and anaerobic ammonia oxidation (anammox) in mangrove soils.

Luvizotto DM, Araujo JE, Silva MCP, Dias ACF, Kraft B, Tegetmeye H, Strous M, Andreote FD.

An Acad Bras Cienc. 2019;91(suppl 1):e20180373. doi: 10.1590/0001-3765201820180373. Epub 2018 Oct 25.

11.

Metabolic specialization of denitrifiers in permeable sediments controls N2 O emissions.

Marchant HK, Tegetmeyer HE, Ahmerkamp S, Holtappels M, Lavik G, Graf J, Schreiber F, Mussmann M, Strous M, Kuypers MMM.

Environ Microbiol. 2018 Dec;20(12):4486-4502. doi: 10.1111/1462-2920.14385. Epub 2018 Oct 16.

PMID:
30117262
12.

Comparative Proteomics of Three Species of Ammonia-Oxidizing Bacteria.

Zorz JK, Kozlowski JA, Stein LY, Strous M, Kleiner M.

Front Microbiol. 2018 May 14;9:938. doi: 10.3389/fmicb.2018.00938. eCollection 2018.

13.

Metaproteomics method to determine carbon sources and assimilation pathways of species in microbial communities.

Kleiner M, Dong X, Hinzke T, Wippler J, Thorson E, Mayer B, Strous M.

Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5576-E5584. doi: 10.1073/pnas.1722325115. Epub 2018 May 29.

14.

Designer microbiomes for environmental, energy and health biotechnology.

Strous M, Sharp C.

Curr Opin Microbiol. 2018 Jun;43:117-123. doi: 10.1016/j.mib.2017.12.007. Epub 2018 Feb 3. Review.

PMID:
29366937
15.

Assessing species biomass contributions in microbial communities via metaproteomics.

Kleiner M, Thorson E, Sharp CE, Dong X, Liu D, Li C, Strous M.

Nat Commun. 2017 Nov 16;8(1):1558. doi: 10.1038/s41467-017-01544-x.

16.

Biofilm-based photobioreactors: their design and improving productivity through efficient supply of dissolved inorganic carbon.

Li T, Strous M, Melkonian M.

FEMS Microbiol Lett. 2017 Dec 29;364(24). doi: 10.1093/femsle/fnx218. Review.

PMID:
29069404
17.

Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, Fritz A, Garrido-Oter R, Jørgensen TS, Shapiro N, Blood PD, Gurevich A, Bai Y, Turaev D, DeMaere MZ, Chikhi R, Nagarajan N, Quince C, Meyer F, Balvočiūtė M, Hansen LH, Sørensen SJ, Chia BKH, Denis B, Froula JL, Wang Z, Egan R, Don Kang D, Cook JJ, Deltel C, Beckstette M, Lemaitre C, Peterlongo P, Rizk G, Lavenier D, Wu YW, Singer SW, Jain C, Strous M, Klingenberg H, Meinicke P, Barton MD, Lingner T, Lin HH, Liao YC, Silva GGZ, Cuevas DA, Edwards RA, Saha S, Piro VC, Renard BY, Pop M, Klenk HP, Göker M, Kyrpides NC, Woyke T, Vorholt JA, Schulze-Lefert P, Rubin EM, Darling AE, Rattei T, McHardy AC.

Nat Methods. 2017 Nov;14(11):1063-1071. doi: 10.1038/nmeth.4458. Epub 2017 Oct 2.

18.

Transient exposure to oxygen or nitrate reveals ecophysiology of fermentative and sulfate-reducing benthic microbial populations.

Saad S, Bhatnagar S, Tegetmeyer HE, Geelhoed JS, Strous M, Ruff SE.

Environ Microbiol. 2017 Dec;19(12):4866-4881. doi: 10.1111/1462-2920.13895. Epub 2017 Sep 15.

19.

Fast and Simple Analysis of MiSeq Amplicon Sequencing Data with MetaAmp.

Dong X, Kleiner M, Sharp CE, Thorson E, Li C, Liu D, Strous M.

Front Microbiol. 2017 Aug 3;8:1461. doi: 10.3389/fmicb.2017.01461. eCollection 2017.

20.

Robust, high-productivity phototrophic carbon capture at high pH and alkalinity using natural microbial communities.

Sharp CE, Urschel S, Dong X, Brady AL, Slater GF, Strous M.

Biotechnol Biofuels. 2017 Mar 29;10:84. doi: 10.1186/s13068-017-0769-1. eCollection 2017.

21.

Syntrophic linkage between predatory Carpediemonas and specific prokaryotic populations.

Hamann E, Tegetmeyer HE, Riedel D, Littmann S, Ahmerkamp S, Chen J, Hach PF, Strous M.

ISME J. 2017 May;11(5):1205-1217. doi: 10.1038/ismej.2016.197. Epub 2017 Feb 17.

22.

Impacts of chemical gradients on microbial community structure.

Chen J, Hanke A, Tegetmeyer HE, Kattelmann I, Sharma R, Hamann E, Hargesheimer T, Kraft B, Lenk S, Geelhoed JS, Hettich RL, Strous M.

ISME J. 2017 Apr;11(4):920-931. doi: 10.1038/ismej.2016.175. Epub 2017 Jan 17.

23.

Environmental Breviatea harbour mutualistic Arcobacter epibionts.

Hamann E, Gruber-Vodicka H, Kleiner M, Tegetmeyer HE, Riedel D, Littmann S, Chen J, Milucka J, Viehweger B, Becker KW, Dong X, Stairs CW, Hinrichs KU, Brown MW, Roger AJ, Strous M.

Nature. 2016 Jun 9;534(7606):254-8. doi: 10.1038/nature18297. Epub 2016 Jun 1.

24.

Haloalkaline Bioconversions for Methane Production from Microalgae Grown on Sunlight.

Daelman MRJ, Sorokin D, Kruse O, van Loosdrecht MCM, Strous M.

Trends Biotechnol. 2016 Jun;34(6):450-457. doi: 10.1016/j.tibtech.2016.02.008. Epub 2016 Mar 8.

PMID:
26968613
25.

Metagenomic Analysis Indicates Epsilonproteobacteria as a Potential Cause of Microbial Corrosion in Pipelines Injected with Bisulfite.

An D, Dong X, An A, Park HS, Strous M, Voordouw G.

Front Microbiol. 2016 Jan 28;7:28. doi: 10.3389/fmicb.2016.00028. eCollection 2016.

26.

Selective Pressure of Temperature on Competition and Cross-Feeding within Denitrifying and Fermentative Microbial Communities.

Hanke A, Berg J, Hargesheimer T, Tegetmeyer HE, Sharp CE, Strous M.

Front Microbiol. 2016 Jan 7;6:1461. doi: 10.3389/fmicb.2015.01461. eCollection 2015.

27.

Use of highly alkaline conditions to improve cost-effectiveness of algal biotechnology.

Canon-Rubio KA, Sharp CE, Bergerson J, Strous M, De la Hoz Siegler H.

Appl Microbiol Biotechnol. 2016 Feb;100(4):1611-22. doi: 10.1007/s00253-015-7208-7. Epub 2015 Dec 22. Review.

PMID:
26691517
28.

Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads.

Nolla-Ardèvol V, Peces M, Strous M, Tegetmeyer HE.

BMC Microbiol. 2015 Dec 17;15:277. doi: 10.1186/s12866-015-0615-1.

29.

Anaerobic digestion of the microalga Spirulina at extreme alkaline conditions: biogas production, metagenome, and metatranscriptome.

Nolla-Ardèvol V, Strous M, Tegetmeyer HE.

Front Microbiol. 2015 Jun 22;6:597. doi: 10.3389/fmicb.2015.00597. eCollection 2015.

30.

Rapid recovery of cyanobacterial pigments in desiccated biological soil crusts following addition of water.

Abed RM, Polerecky L, Al-Habsi A, Oetjen J, Strous M, de Beer D.

PLoS One. 2014 Nov 6;9(11):e112372. doi: 10.1371/journal.pone.0112372. eCollection 2014.

31.

Nitrogen cycling. The environmental controls that govern the end product of bacterial nitrate respiration.

Kraft B, Tegetmeyer HE, Sharma R, Klotz MG, Ferdelman TG, Hettich RL, Geelhoed JS, Strous M.

Science. 2014 Aug 8;345(6197):676-9. doi: 10.1126/science.1254070.

32.

Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture.

Kraft B, Tegetmeyer HE, Meier D, Geelhoed JS, Strous M.

Environ Microbiol. 2014 Oct;16(10):3275-86. doi: 10.1111/1462-2920.12552. Epub 2014 Aug 6.

33.

Recoding of the stop codon UGA to glycine by a BD1-5/SN-2 bacterium and niche partitioning between Alpha- and Gammaproteobacteria in a tidal sediment microbial community naturally selected in a laboratory chemostat.

Hanke A, Hamann E, Sharma R, Geelhoed JS, Hargesheimer T, Kraft B, Meyer V, Lenk S, Osmers H, Wu R, Makinwa K, Hettich RL, Banfield JF, Tegetmeyer HE, Strous M.

Front Microbiol. 2014 May 16;5:231. doi: 10.3389/fmicb.2014.00231. eCollection 2014.

34.

An improved medium for the anaerobic growth of Paracoccus denitrificans Pd1222.

Hahnke SM, Moosmann P, Erb TJ, Strous M.

Front Microbiol. 2014 Jan 31;5:18. doi: 10.3389/fmicb.2014.00018. eCollection 2014.

35.

Responses of the coastal bacterial community to viral infection of the algae Phaeocystis globosa.

Sheik AR, Brussaard CP, Lavik G, Lam P, Musat N, Krupke A, Littmann S, Strous M, Kuypers MM.

ISME J. 2014 Jan;8(1):212-25. doi: 10.1038/ismej.2013.135. Epub 2013 Aug 15.

36.

The binning of metagenomic contigs for microbial physiology of mixed cultures.

Strous M, Kraft B, Bisdorf R, Tegetmeyer HE.

Front Microbiol. 2012 Dec 5;3:410. doi: 10.3389/fmicb.2012.00410. eCollection 2012.

37.

Factors influencing the density of aerobic granular sludge.

Winkler MK, Kleerebezem R, Strous M, Chandran K, van Loosdrecht MC.

Appl Microbiol Biotechnol. 2013 Aug;97(16):7459-68. doi: 10.1007/s00253-012-4459-4. Epub 2012 Oct 14.

PMID:
23064481
38.

Denitrification and aerobic respiration, hybrid electron transport chains and co-evolution.

Chen J, Strous M.

Biochim Biophys Acta. 2013 Feb;1827(2):136-44. doi: 10.1016/j.bbabio.2012.10.002. Epub 2012 Oct 5.

39.

Optimizing membrane protein overexpression in the Escherichia coli strain Lemo21(DE3).

Schlegel S, Löfblom J, Lee C, Hjelm A, Klepsch M, Strous M, Drew D, Slotboom DJ, de Gier JW.

J Mol Biol. 2012 Nov 2;423(4):648-59. doi: 10.1016/j.jmb.2012.07.019. Epub 2012 Jul 31.

PMID:
22858868
40.

Co-localization of particulate methane monooxygenase and cd1 nitrite reductase in the denitrifying methanotroph 'Candidatus Methylomirabilis oxyfera'.

Wu ML, van Alen TA, van Donselaar EG, Strous M, Jetten MS, van Niftrik L.

FEMS Microbiol Lett. 2012 Sep;334(1):49-56. doi: 10.1111/j.1574-6968.2012.02615.x.

41.

Activity and diversity of haloalkaliphilic methanogens in Central Asian soda lakes.

Nolla-Ardèvol V, Strous M, Sorokin DY, Merkel AY, Tegetmeyer HE.

J Biotechnol. 2012 Oct 15;161(2):167-73. doi: 10.1016/j.jbiotec.2012.04.003. Epub 2012 Apr 20.

PMID:
22542628
42.

Effect of oxygen on the anaerobic methanotroph 'Candidatus Methylomirabilis oxyfera': kinetic and transcriptional analysis.

Luesken FA, Wu ML, Op den Camp HJ, Keltjens JT, Stunnenberg H, Francoijs KJ, Strous M, Jetten MS.

Environ Microbiol. 2012 Apr;14(4):1024-34. doi: 10.1111/j.1462-2920.2011.02682.x. Epub 2012 Jan 6.

PMID:
22221911
43.

Ultrastructure of the denitrifying methanotroph "Candidatus Methylomirabilis oxyfera," a novel polygon-shaped bacterium.

Wu ML, van Teeseling MC, Willems MJ, van Donselaar EG, Klingl A, Rachel R, Geerts WJ, Jetten MS, Strous M, van Niftrik L.

J Bacteriol. 2012 Jan;194(2):284-91. doi: 10.1128/JB.05816-11. Epub 2011 Oct 21.

44.

Molecular mechanism of anaerobic ammonium oxidation.

Kartal B, Maalcke WJ, de Almeida NM, Cirpus I, Gloerich J, Geerts W, Op den Camp HJ, Harhangi HR, Janssen-Megens EM, Francoijs KJ, Stunnenberg HG, Keltjens JT, Jetten MS, Strous M.

Nature. 2011 Oct 2;479(7371):127-30. doi: 10.1038/nature10453.

PMID:
21964329
45.

Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge.

Luesken FA, van Alen TA, van der Biezen E, Frijters C, Toonen G, Kampman C, Hendrickx TL, Zeeman G, Temmink H, Strous M, Op den Camp HJ, Jetten MS.

Appl Microbiol Biotechnol. 2011 Nov;92(4):845-54. doi: 10.1007/s00253-011-3361-9. Epub 2011 Jun 11.

46.

FACIL: Fast and Accurate Genetic Code Inference and Logo.

Dutilh BE, Jurgelenaite R, Szklarczyk R, van Hijum SA, Harhangi HR, Schmid M, de Wild B, Françoijs KJ, Stunnenberg HG, Strous M, Jetten MS, Op den Camp HJ, Huynen MA.

Bioinformatics. 2011 Jul 15;27(14):1929-33. doi: 10.1093/bioinformatics/btr316. Epub 2011 Jun 8.

47.

A multi-proxy study of anaerobic ammonium oxidation in marine sediments of the Gullmar Fjord, Sweden.

Brandsma J, van de Vossenberg J, Risgaard-Petersen N, Schmid MC, Engström P, Eurenius K, Hulth S, Jaeschke A, Abbas B, Hopmans EC, Strous M, Schouten S, Jetten MS, Damsté JS.

Environ Microbiol Rep. 2011 Jun;3(3):360-6. doi: 10.1111/j.1758-2229.2010.00233.x. Epub 2011 Jan 10.

PMID:
23761282
48.

Predicting microbial nitrogen pathways from basic principles.

van de Leemput IA, Veraart AJ, Dakos V, de Klein JJ, Strous M, Scheffer M.

Environ Microbiol. 2011 Jun;13(6):1477-87. doi: 10.1111/j.1462-2920.2011.02450.x. Epub 2011 Mar 23. Erratum in: Environ Microbiol. 2014 Jan;16(1):332.

PMID:
21429064
49.

A new intra-aerobic metabolism in the nitrite-dependent anaerobic methane-oxidizing bacterium Candidatus 'Methylomirabilis oxyfera'.

Wu ML, Ettwig KF, Jetten MS, Strous M, Keltjens JT, van Niftrik L.

Biochem Soc Trans. 2011 Jan;39(1):243-8. doi: 10.1042/BST0390243. Review.

PMID:
21265781
50.

Microbial nitrate respiration--genes, enzymes and environmental distribution.

Kraft B, Strous M, Tegetmeyer HE.

J Biotechnol. 2011 Aug 20;155(1):104-17. doi: 10.1016/j.jbiotec.2010.12.025. Epub 2011 Jan 8. Review.

PMID:
21219945

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