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Items: 25

1.

Bulged and Canonical G-Quadruplex Conformations Determine NDPK Binding Specificity.

Kopylov M, Jackson TM, Stroupe ME.

Molecules. 2019 May 23;24(10). pii: E1988. doi: 10.3390/molecules24101988.

2.

NADPH-dependent sulfite reductase flavoprotein adopts an extended conformation unique to this diflavin reductase.

Tavolieri AM, Murray DT, Askenasy I, Pennington JM, McGarry L, Stanley CB, Stroupe ME.

J Struct Biol. 2019 Feb 1;205(2):170-179. doi: 10.1016/j.jsb.2019.01.001. Epub 2019 Jan 15.

PMID:
30654136
3.

The role of extended Fe4S4 cluster ligands in mediating sulfite reductase hemoprotein activity.

Cepeda MR, McGarry L, Pennington JM, Krzystek J, Stroupe ME.

Biochim Biophys Acta Proteins Proteom. 2018 Sep;1866(9):933-940. doi: 10.1016/j.bbapap.2018.05.013. Epub 2018 May 28.

PMID:
29852252
4.

Structure-Function Relationships in the Oligomeric NADPH-Dependent Assimilatory Sulfite Reductase.

Askenasy I, Murray DT, Andrews RM, Uversky VN, He H, Stroupe ME.

Biochemistry. 2018 Jul 3;57(26):3764-3772. doi: 10.1021/acs.biochem.8b00446. Epub 2018 Jun 4.

PMID:
29787249
5.

Structure, proteome and genome of Sinorhizobium meliloti phage ΦM5: A virus with LUZ24-like morphology and a highly mosaic genome.

Johnson MC, Sena-Velez M, Washburn BK, Platt GN, Lu S, Brewer TE, Lynn JS, Stroupe ME, Jones KM.

J Struct Biol. 2017 Dec;200(3):343-359. doi: 10.1016/j.jsb.2017.08.005. Epub 2017 Aug 24.

6.

Structural Heterogeneity in Pre-40S Ribosomes.

Johnson MC, Ghalei H, Doxtader KA, Karbstein K, Stroupe ME.

Structure. 2017 Feb 7;25(2):329-340. doi: 10.1016/j.str.2016.12.011. Epub 2017 Jan 19.

7.

The DEAD-box Protein Rok1 Orchestrates 40S and 60S Ribosome Assembly by Promoting the Release of Rrp5 from Pre-40S Ribosomes to Allow for 60S Maturation.

Khoshnevis S, Askenasy I, Johnson MC, Dattolo MD, Young-Erdos CL, Stroupe ME, Karbstein K.

PLoS Biol. 2016 Jun 9;14(6):e1002480. doi: 10.1371/journal.pbio.1002480. eCollection 2016 Jun.

8.

Sinorhizobium meliloti Phage ΦM9 Defines a New Group of T4 Superfamily Phages with Unusual Genomic Features but a Common T=16 Capsid.

Johnson MC, Tatum KB, Lynn JS, Brewer TE, Lu S, Washburn BK, Stroupe ME, Jones KM.

J Virol. 2015 Nov;89(21):10945-58. doi: 10.1128/JVI.01353-15. Epub 2015 Aug 26.

9.

The N-terminal Domain of Escherichia coli Assimilatory NADPH-Sulfite Reductase Hemoprotein Is an Oligomerization Domain That Mediates Holoenzyme Assembly.

Askenasy I, Pennington JM, Tao Y, Marshall AG, Young NL, Shang W, Stroupe ME.

J Biol Chem. 2015 Jul 31;290(31):19319-33. doi: 10.1074/jbc.M115.662379. Epub 2015 Jun 18.

10.

Hrr25/CK1δ-directed release of Ltv1 from pre-40S ribosomes is necessary for ribosome assembly and cell growth.

Ghalei H, Schaub FX, Doherty JR, Noguchi Y, Roush WR, Cleveland JL, Stroupe ME, Karbstein K.

J Cell Biol. 2015 Mar 16;208(6):745-59. doi: 10.1083/jcb.201409056.

11.

The maize (Zea mays L.) nucleoside diphosphate kinase1 (ZmNDPK1) gene encodes a human NM23-H2 homologue that binds and stabilizes G-quadruplex DNA.

Kopylov M, Bass HW, Stroupe ME.

Biochemistry. 2015 Mar 10;54(9):1743-57. doi: 10.1021/bi501284g. Epub 2015 Feb 24.

PMID:
25679041
12.

G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient deprivation.

Andorf CM, Kopylov M, Dobbs D, Koch KE, Stroupe ME, Lawrence CJ, Bass HW.

J Genet Genomics. 2014 Dec 20;41(12):627-47. doi: 10.1016/j.jgg.2014.10.004. Epub 2014 Nov 4.

13.

The structure of Sinorhizobium meliloti phage ΦM12, which has a novel T=19l triangulation number and is the founder of a new group of T4-superfamily phages.

Stroupe ME, Brewer TE, Sousa DR, Jones KM.

Virology. 2014 Feb;450-451:205-12. doi: 10.1016/j.virol.2013.11.019. Epub 2014 Jan 6.

14.

The genome, proteome and phylogenetic analysis of Sinorhizobium meliloti phage ΦM12, the founder of a new group of T4-superfamily phages.

Brewer TE, Stroupe ME, Jones KM.

Virology. 2014 Feb;450-451:84-97. doi: 10.1016/j.virol.2013.11.027. Epub 2013 Dec 25.

15.

Cryo-EM structures of the actin:tropomyosin filament reveal the mechanism for the transition from C- to M-state.

Sousa DR, Stagg SM, Stroupe ME.

J Mol Biol. 2013 Nov 15;425(22):4544-55. doi: 10.1016/j.jmb.2013.08.020. Epub 2013 Sep 8.

16.

Mutational analysis of sulfite reductase hemoprotein reveals the mechanism for coordinated electron and proton transfer.

Smith KW, Stroupe ME.

Biochemistry. 2012 Dec 11;51(49):9857-68. doi: 10.1021/bi300947a. Epub 2012 Nov 29.

PMID:
23153334
17.

Actin filament labels for localizing protein components in large complexes viewed by electron microscopy.

Stroupe ME, Xu C, Goode BL, Grigorieff N.

RNA. 2009 Feb;15(2):244-8. doi: 10.1261/rna.1313609. Epub 2008 Dec 17.

18.

High-resolution electron microscopy of helical specimens: a fresh look at tobacco mosaic virus.

Sachse C, Chen JZ, Coureux PD, Stroupe ME, Fändrich M, Grigorieff N.

J Mol Biol. 2007 Aug 17;371(3):812-35. Epub 2007 Jun 4.

19.

The three-dimensional arcitecture of the EJC core.

Stroupe ME, Tange TØ, Thomas DR, Moore MJ, Grigorieff N.

J Mol Biol. 2006 Jul 21;360(4):743-9. Epub 2006 Jun 5.

PMID:
16797590
21.

Role of hydrogen bonding in the active site of human manganese superoxide dismutase.

Greenleaf WB, Perry JJ, Hearn AS, Cabelli DE, Lepock JR, Stroupe ME, Tainer JA, Nick HS, Silverman DN.

Biochemistry. 2004 Jun 8;43(22):7038-45.

PMID:
15170341
22.

CysG structure reveals tetrapyrrole-binding features and novel regulation of siroheme biosynthesis.

Stroupe ME, Leech HK, Daniels DS, Warren MJ, Getzoff ED.

Nat Struct Biol. 2003 Dec;10(12):1064-73. Epub 2003 Nov 2.

PMID:
14595395
23.

Catalytic and structural effects of amino acid substitution at histidine 30 in human manganese superoxide dismutase: insertion of valine C gamma into the substrate access channel.

Hearn AS, Stroupe ME, Cabelli DE, Ramilo CA, Luba JP, Tainer JA, Nick HS, Silverman DN.

Biochemistry. 2003 Mar 18;42(10):2781-9.

PMID:
12627943
24.

Kinetic analysis of product inhibition in human manganese superoxide dismutase.

Hearn AS, Stroupe ME, Cabelli DE, Lepock JR, Tainer JA, Nick HS, Silverman DN.

Biochemistry. 2001 Oct 9;40(40):12051-8.

PMID:
11580280
25.

Multiple replacements of glutamine 143 in human manganese superoxide dismutase: effects on structure, stability, and catalysis.

Lévêque VJ, Stroupe ME, Lepock JR, Cabelli DE, Tainer JA, Nick HS, Silverman DN.

Biochemistry. 2000 Jun 20;39(24):7131-7.

PMID:
10852710

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