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Items: 1 to 50 of 75

1.

Interlaboratory Evaluation of the U.S. Food and Drug Administration Escherichia coli Identification Microarray for Profiling Shiga Toxin-Producing Escherichia coli.

Patel IR, Gangiredla J, Lacher DW, Mammel MK, Bagi L, Baranzoni GM, Fratamico PM, Roberts EL, DebROY C, Lindsey RL, V Stoneburg D, Martin H, Smith P, Strockbine NA, Elkins CA, Scheutz F, Feng PCH.

J Food Prot. 2018 Aug;81(8):1275-1282. doi: 10.4315/0362-028X.JFP-18-052.

2.

High-Quality Whole-Genome Sequences for 77 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing.

Patel PN, Lindsey RL, Garcia-Toledo L, Rowe LA, Batra D, Whitley SW, Drapeau D, Stoneburg D, Martin H, Juieng P, Loparev VN, Strockbine N.

Genome Announc. 2018 May 10;6(19). pii: e00391-18. doi: 10.1128/genomeA.00391-18.

3.

DNA microarray-based assessment of virulence potential of Shiga toxin gene-carrying Escherichia coli O104:H7 isolated from feedlot cattle feces.

Shridhar PB, Patel IR, Gangiredla J, Noll LW, Shi X, Bai J, Elkins CA, Strockbine N, Nagaraja TG.

PLoS One. 2018 Apr 30;13(4):e0196490. doi: 10.1371/journal.pone.0196490. eCollection 2018.

4.

High-Quality Whole-Genome Sequences for 59 Historical Shigella Strains Generated with PacBio Sequencing.

Kim J, Lindsey RL, Garcia-Toledo L, Loparev VN, Rowe LA, Batra D, Juieng P, Stoneburg D, Martin H, Knipe K, Smith P, Strockbine N.

Genome Announc. 2018 Apr 12;6(15). pii: e00282-18. doi: 10.1128/genomeA.00282-18.

5.

Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing.

Shridhar PB, Patel IR, Gangiredla J, Noll LW, Shi X, Bai J, Elkins CA, Strockbine NA, Nagaraja TG.

Front Microbiol. 2018 Mar 1;9:341. doi: 10.3389/fmicb.2018.00341. eCollection 2018.

6.

High-Quality Whole-Genome Sequences for 21 Enterotoxigenic Escherichia coli Strains Generated with PacBio Sequencing.

Smith P, Lindsey RL, Rowe LA, Batra D, Stripling D, Garcia-Toledo L, Drapeau D, Knipe K, Strockbine N.

Genome Announc. 2018 Jan 11;6(2). pii: e01311-17. doi: 10.1128/genomeA.01311-17.

7.

High-Quality Draft Genome Sequences for Four Drug-Resistant or Outbreak-Associated Shigella sonnei Strains Generated with PacBio Sequencing and Whole-Genome Maps.

Lindsey RL, Batra D, Rowe L, N Loparev V, Juieng P, Garcia-Toledo L, Bicknese A, Stripling D, Martin H, Chen J, Strockbine N, Trees E.

Genome Announc. 2017 Aug 31;5(35). pii: e00906-17. doi: 10.1128/genomeA.00906-17.

8.

Draft Genome Sequences of Escherichia coli O104 Strains of Bovine and Human Origin.

Shridhar PB, Patel IR, Gangiredla J, Mammel MK, Noll L, Shi X, Bai J, Elkins CA, Strockbine N, Nagaraja TG.

Genome Announc. 2017 Aug 17;5(33). pii: e00630-17. doi: 10.1128/genomeA.00630-17.

9.

Multiplex polymerase chain reaction for identification of Escherichia coli, Escherichia albertii and Escherichia fergusonii.

Lindsey RL, Garcia-Toledo L, Fasulo D, Gladney LM, Strockbine N.

J Microbiol Methods. 2017 Sep;140:1-4. doi: 10.1016/j.mimet.2017.06.005. Epub 2017 Jun 6.

10.

Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX.

Nat Microbiol. 2016 Oct 3;1(11):16209. doi: 10.1038/nmicrobiol.2016.209. No abstract available.

PMID:
27694821
11.

Investigation of Escherichia coli Harboring the mcr-1 Resistance Gene - Connecticut, 2016.

Vasquez AM, Montero N, Laughlin M, Dancy E, Melmed R, Sosa L, Watkins LF, Folster JP, Strockbine N, Moulton-Meissner H, Ansari U, Cartter ML, Walters MS.

MMWR Morb Mortal Wkly Rep. 2016 Sep 16;65(36):979-80. doi: 10.15585/mmwr.mm6536e3.

12.

Global phylogeography and evolutionary history of Shigella dysenteriae type 1.

Njamkepo E, Fawal N, Tran-Dien A, Hawkey J, Strockbine N, Jenkins C, Talukder KA, Bercion R, Kuleshov K, Kolínská R, Russell JE, Kaftyreva L, Accou-Demartin M, Karas A, Vandenberg O, Mather AE, Mason CJ, Page AJ, Ramamurthy T, Bizet C, Gamian A, Carle I, Sow AG, Bouchier C, Wester AL, Lejay-Collin M, Fonkoua MC, Le Hello S, Blaser MJ, Jernberg C, Ruckly C, Mérens A, Page AL, Aslett M, Roggentin P, Fruth A, Denamur E, Venkatesan M, Bercovier H, Bodhidatta L, Chiou CS, Clermont D, Colonna B, Egorova S, Pazhani GP, Ezernitchi AV, Guigon G, Harris SR, Izumiya H, Korzeniowska-Kowal A, Lutyńska A, Gouali M, Grimont F, Langendorf C, Marejková M, Peterson LA, Perez-Perez G, Ngandjio A, Podkolzin A, Souche E, Makarova M, Shipulin GA, Ye C, Žemličková H, Herpay M, Grimont PA, Parkhill J, Sansonetti P, Holt KE, Brisse S, Thomson NR, Weill FX.

Nat Microbiol. 2016 Mar 21;1:16027. doi: 10.1038/nmicrobiol.2016.27. Erratum in: Nat Microbiol. 2016 Oct 03;1(11):16209.

PMID:
27572446
13.

High-Quality Draft Genome Sequences for Five Non-O157 Shiga Toxin-Producing Escherichia coli Strains Generated with PacBio Sequencing and Optical Maps.

Lindsey RL, Rowe L, Garcia-Toledo L, Loparev V, Knipe K, Stripling D, Martin H, Trees E, Juieng P, Batra D, Strockbine N.

Genome Announc. 2016 Jun 30;4(3). pii: e00626-16. doi: 10.1128/genomeA.00626-16.

14.

Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.

Lindsey RL, Pouseele H, Chen JC, Strockbine NA, Carleton HA.

Front Microbiol. 2016 May 23;7:766. doi: 10.3389/fmicb.2016.00766. eCollection 2016.

15.

Complete Genome Sequences of Two Shiga Toxin-Producing Escherichia coli Strains from Serotypes O119:H4 and O165:H25.

Lindsey RL, Knipe K, Rowe L, Garcia-Toledo L, Loparev V, Juieng P, Trees E, Strockbine N, Stripling D, Gerner-Smidt P.

Genome Announc. 2015 Dec 17;3(6). pii: e01496-15. doi: 10.1128/genomeA.01496-15.

16.

Comparison of whole genome sequences from human and non-human Escherichia coli O26 strains.

Norman KN, Clawson ML, Strockbine NA, Mandrell RE, Johnson R, Ziebell K, Zhao S, Fratamico PM, Stones R, Allard MW, Bono JL.

Front Cell Infect Microbiol. 2015 Mar 11;5:21. doi: 10.3389/fcimb.2015.00021. eCollection 2015.

17.

Investigation of an outbreak of bloody diarrhea complicated with hemolytic uremic syndrome.

Chokoshvili O, Lomashvili K, Malakmadze N, Geleishvil M, Brant J, Imnadze P, Chitadze N, Tevzadze L, Chanturia G, Tevdoradze T, Tsertsvadze T, Talkington D, Mody RK, Strockbine N, Gerber RA, Maes E, Rush T.

J Epidemiol Glob Health. 2014 Dec;4(4):249-59. doi: 10.1016/j.jegh.2014.03.004. Epub 2014 Apr 30.

18.

Draft Genome Sequence of Raoultella planticola, Isolated from River Water.

Jothikumar N, Kahler A, Strockbine N, Gladney L, Hill VR.

Genome Announc. 2014 Oct 16;2(5). pii: e01061-14. doi: 10.1128/genomeA.01061-14.

19.

Draft Genome Sequence of Buttiauxella agrestis, Isolated from Surface Water.

Jothikumar N, Kahler A, Strockbine N, Gladney L, Hill VR.

Genome Announc. 2014 Oct 16;2(5). pii: e01060-14. doi: 10.1128/genomeA.01060-14.

20.

Clinical isolates of Shiga toxin 1a-producing Shigella flexneri with an epidemiological link to recent travel to Hispañiola.

Gray MD, Lampel KA, Strockbine NA, Fernandez RE, Melton-Celsa AR, Maurelli AT.

Emerg Infect Dis. 2014 Oct;20(10):1669-77. doi: 10.3201/eid2010.140292.

21.

Genome Sequences of 228 Shiga Toxin-Producing Escherichia coli Isolates and 12 Isolates Representing Other Diarrheagenic E. coli Pathotypes.

Trees E, Strockbine N, Changayil S, Ranganathan S, Zhao K, Weil R, MacCannell D, Sabol A, Schmidtke A, Martin H, Stripling D, Ribot EM, Gerner-Smidt P.

Genome Announc. 2014 Aug 7;2(4). pii: e00718-14. doi: 10.1128/genomeA.00718-14.

22.

Draft Whole-Genome Sequences of Nine Non-O157 Shiga Toxin-Producing Escherichia coli Strains.

Lindsey RL, Trees E, Sammons S, Loparev V, Frace M, Strockbine N, Sabol AL, Sowers E, Stripling D, Martin H, Knipe K, Rowe L, Gerner-Smidt P.

Genome Announc. 2014 Jul 10;2(4). pii: e00501-14. doi: 10.1128/genomeA.00501-14.

23.

Shigella isolates from the global enteric multicenter study inform vaccine development.

Livio S, Strockbine NA, Panchalingam S, Tennant SM, Barry EM, Marohn ME, Antonio M, Hossain A, Mandomando I, Ochieng JB, Oundo JO, Qureshi S, Ramamurthy T, Tamboura B, Adegbola RA, Hossain MJ, Saha D, Sen S, Faruque AS, Alonso PL, Breiman RF, Zaidi AK, Sur D, Sow SO, Berkeley LY, O'Reilly CE, Mintz ED, Biswas K, Cohen D, Farag TH, Nasrin D, Wu Y, Blackwelder WC, Kotloff KL, Nataro JP, Levine MM.

Clin Infect Dis. 2014 Oct;59(7):933-41. doi: 10.1093/cid/ciu468. Epub 2014 Jun 23.

24.

Outbreaks of non-O157 Shiga toxin-producing Escherichia coli infection: USA.

Luna-Gierke RE, Griffin PM, Gould LH, Herman K, Bopp CA, Strockbine N, Mody RK.

Epidemiol Infect. 2014 Nov;142(11):2270-80. doi: 10.1017/S0950268813003233. Epub 2014 Jan 7.

PMID:
24398154
25.

Genotypes and virulence characteristics of Shiga toxin-producing Escherichia coli O104 strains from different origins and sources.

Miko A, Delannoy S, Fach P, Strockbine NA, Lindstedt BA, Mariani-Kurkdjian P, Reetz J, Beutin L.

Int J Med Microbiol. 2013 Dec;303(8):410-21. doi: 10.1016/j.ijmm.2013.05.006. Epub 2013 May 28.

PMID:
23777812
26.

Diagnostic microbiologic methods in the GEMS-1 case/control study.

Panchalingam S, Antonio M, Hossain A, Mandomando I, Ochieng B, Oundo J, Ramamurthy T, Tamboura B, Zaidi AK, Petri W, Houpt E, Murray P, Prado V, Vidal R, Steele D, Strockbine N, Sansonetti P, Glass RI, Robins-Browne RM, Tauschek M, Svennerholm AM, Berkeley LY, Kotloff K, Levine MM, Nataro JP.

Clin Infect Dis. 2012 Dec;55 Suppl 4:S294-302. doi: 10.1093/cid/cis754. Erratum in: Clin Infect Dis. 2013 Jun;56(12):1851. Berkeley, Lynette Y [added].

27.

Genomic comparison of Escherichia coli O104:H4 isolates from 2009 and 2011 reveals plasmid, and prophage heterogeneity, including shiga toxin encoding phage stx2.

Ahmed SA, Awosika J, Baldwin C, Bishop-Lilly KA, Biswas B, Broomall S, Chain PS, Chertkov O, Chokoshvili O, Coyne S, Davenport K, Detter JC, Dorman W, Erkkila TH, Folster JP, Frey KG, George M, Gleasner C, Henry M, Hill KK, Hubbard K, Insalaco J, Johnson S, Kitzmiller A, Krepps M, Lo CC, Luu T, McNew LA, Minogue T, Munk CA, Osborne B, Patel M, Reitenga KG, Rosenzweig CN, Shea A, Shen X, Strockbine N, Tarr C, Teshima H, van Gieson E, Verratti K, Wolcott M, Xie G, Sozhamannan S, Gibbons HS; Threat Characterization Consortium.

PLoS One. 2012;7(11):e48228. doi: 10.1371/journal.pone.0048228. Epub 2012 Nov 1.

28.

Infections in pediatric postdiarrheal hemolytic uremic syndrome: factors associated with identifying shiga toxin-producing Escherichia coli.

Mody RK, Luna-Gierke RE, Jones TF, Comstock N, Hurd S, Scheftel J, Lathrop S, Smith G, Palmer A, Strockbine N, Talkington D, Mahon BE, Hoekstra RM, Griffin PM.

Arch Pediatr Adolesc Med. 2012 Oct;166(10):902-9.

PMID:
22869280
29.

Spread of a distinct Stx2-encoding phage prototype among Escherichia coli O104:H4 strains from outbreaks in Germany, Norway, and Georgia.

Beutin L, Hammerl JA, Strauch E, Reetz J, Dieckmann R, Kelner-Burgos Y, Martin A, Miko A, Strockbine NA, Lindstedt BA, Horn D, Monse H, Huettel B, Müller I, Stüber K, Reinhardt R.

J Virol. 2012 Oct;86(19):10444-55. doi: 10.1128/JVI.00986-12. Epub 2012 Jul 18.

30.

Association of nucleotide polymorphisms within the O-antigen gene cluster of Escherichia coli O26, O45, O103, O111, O121, and O145 with serogroups and genetic subtypes.

Norman KN, Strockbine NA, Bono JL.

Appl Environ Microbiol. 2012 Sep;78(18):6689-703. doi: 10.1128/AEM.01259-12. Epub 2012 Jul 13.

31.

Multicenter evaluation of a sequence-based protocol for subtyping Shiga toxins and standardizing Stx nomenclature.

Scheutz F, Teel LD, Beutin L, Piérard D, Buvens G, Karch H, Mellmann A, Caprioli A, Tozzoli R, Morabito S, Strockbine NA, Melton-Celsa AR, Sanchez M, Persson S, O'Brien AD.

J Clin Microbiol. 2012 Sep;50(9):2951-63. doi: 10.1128/JCM.00860-12. Epub 2012 Jul 3.

32.

In vivo bioluminescence imaging of Escherichia coli O104:H4 and role of aerobactin during colonization of a mouse model of infection.

Torres AG, Cieza RJ, Rojas-Lopez M, Blumentritt CA, Souza CS, Johnston RK, Strockbine N, Kaper JB, Sbrana E, Popov VL.

BMC Microbiol. 2012 Jun 20;12:112. doi: 10.1186/1471-2180-12-112.

33.

Laboratory practices for the identification of Shiga toxin-producing Escherichia coli in the United States, FoodNet sites, 2007.

Hoefer D, Hurd S, Medus C, Cronquist A, Hanna S, Hatch J, Hayes T, Larson K, Nicholson C, Wymore K, Tobin-D'Angelo M, Strockbine N, Snippes P, Atkinson R, Griffin PM, Gould LH; Emerging Infections Program FoodNet Working Group.

Foodborne Pathog Dis. 2011 Apr;8(4):555-60. doi: 10.1089/fpd.2010.0764. Epub 2010 Dec 27.

PMID:
21186994
34.

Yersinia pseudotuberculosis and Y. enterocolitica infections, FoodNet, 1996-2007.

Long C, Jones TF, Vugia DJ, Scheftel J, Strockbine N, Ryan P, Shiferaw B, Tauxe RV, Gould LH.

Emerg Infect Dis. 2010 Mar;16(3):566-7. doi: 10.3201/eid1603.091106. No abstract available.

35.

Recommendations for diagnosis of shiga toxin--producing Escherichia coli infections by clinical laboratories.

Gould LH, Bopp C, Strockbine N, Atkinson R, Baselski V, Body B, Carey R, Crandall C, Hurd S, Kaplan R, Neill M, Shea S, Somsel P, Tobin-D'Angelo M, Griffin PM, Gerner-Smidt P; Centers for Disease Control and Prevention (CDC).

MMWR Recomm Rep. 2009 Oct 16;58(RR-12):1-14.

36.

Emergence of Shiga toxin 1 genes within Shigella dysenteriae type 4 isolates from travelers returning from the Island of Hispañola.

Gupta SK, Strockbine N, Omondi M, Hise K, Fair MA, Mintz E.

Am J Trop Med Hyg. 2007 Jun;76(6):1163-5.

PMID:
17556630
37.

Identification of Vibrio isolates by a multiplex PCR assay and rpoB sequence determination.

Tarr CL, Patel JS, Puhr ND, Sowers EG, Bopp CA, Strockbine NA.

J Clin Microbiol. 2007 Jan;45(1):134-40. Epub 2006 Nov 8.

38.

Non-O157 Shiga toxin-producing Escherichia coli infections in the United States, 1983-2002.

Brooks JT, Sowers EG, Wells JG, Greene KD, Griffin PM, Hoekstra RM, Strockbine NA.

J Infect Dis. 2005 Oct 15;192(8):1422-9. Epub 2005 Sep 14.

PMID:
16170761
39.

Identification and characterization of Shigella boydii 20 serovar nov., a new and emerging Shigella serotype.

Woodward DL, Clark CG, Caldeira RA, Ahmed R, Soule G, Bryden L, Tabor H, Melito P, Foster R, Walsh J, Ng LK, Malcolm GB, Strockbine N, Rodgers FG; Canadian Public Health Laboratory Network.

J Med Microbiol. 2005 Aug;54(Pt 8):741-8.

PMID:
16014427
40.

Evolutionary genetics of a new pathogenic Escherichia species: Escherichia albertii and related Shigella boydii strains.

Hyma KE, Lacher DW, Nelson AM, Bumbaugh AC, Janda JM, Strockbine NA, Young VB, Whittam TS.

J Bacteriol. 2005 Jan;187(2):619-28.

41.
42.

Epidemiological features of a newly described serotype of Shigella boydii.

Kalluri P, Cummings KC, Abbott S, Malcolm GB, Hutcheson K, Beall A, Joyce K, Polyak C, Woodward D, Caldeira R, Rodgers F, Mintz ED, Strockbine N.

Epidemiol Infect. 2004 Aug;132(4):579-83.

43.

Patterns of variations in Escherichia coli strains that produce cytolethal distending toxin.

Pickett CL, Lee RB, Eyigor A, Elitzur B, Fox EM, Strockbine NA.

Infect Immun. 2004 Feb;72(2):684-90.

44.

Accuracy of six commercially available systems for identification of members of the family vibrionaceae.

O'Hara CM, Sowers EG, Bopp CA, Duda SB, Strockbine NA.

J Clin Microbiol. 2003 Dec;41(12):5654-9.

45.

Real-time fluorescence PCR assays for detection and characterization of Shiga toxin, intimin, and enterohemolysin genes from Shiga toxin-producing Escherichia coli.

Reischl U, Youssef MT, Kilwinski J, Lehn N, Zhang WL, Karch H, Strockbine NA.

J Clin Microbiol. 2002 Jul;40(7):2555-65.

46.

Bacterial, viral and parasitic enteric pathogens associated with acute diarrhea in hospitalized children from northern Jordan.

Youssef M, Shurman A, Bougnoux M, Rawashdeh M, Bretagne S, Strockbine N.

FEMS Immunol Med Microbiol. 2000 Jul;28(3):257-63.

47.

A prolonged outbreak of Shigella sonnei infections in traditionally observant Jewish communities in North America caused by a molecularly distinct bacterial subtype.

Sobel J, Cameron DN, Ismail J, Strockbine N, Williams M, Diaz PS, Westley B, Rittmann M, DiCristina J, Ragazzoni H, Tauxe RV, Mintz ED.

J Infect Dis. 1998 May;177(5):1405-9.

PMID:
9593035
48.

Evaluation of commercial latex reagents for identification of O157 and H7 antigens of Escherichia coli.

Sowers EG, Wells JG, Strockbine NA.

J Clin Microbiol. 1996 May;34(5):1286-9.

49.

Isolation and characterization of a beta-D-glucuronidase-producing strain of Escherichia coli serotype O157:H7 in the United States.

Hayes PS, Blom K, Feng P, Lewis J, Strockbine NA, Swaminathan B.

J Clin Microbiol. 1995 Dec;33(12):3347-8.

50.

Genetic polymorphism of the ipaH multicopy antigen gene in Shigella spps. and enteroinvasive Escherichia coli.

Buysse JM, Hartman AB, Strockbine N, Venkatesan M.

Microb Pathog. 1995 Nov;19(5):335-49.

PMID:
8778567

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