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Items: 1 to 50 of 151

1.

Nitrate and Phosphate Transporters Rescue Fluoride Toxicity in Yeast.

Johnston NR, Strobel SA.

Chem Res Toxicol. 2019 Nov 18;32(11):2305-2319. doi: 10.1021/acs.chemrestox.9b00315. Epub 2019 Oct 16.

PMID:
31576749
2.

Gene regulation by a glycine riboswitch singlet uses a finely tuned energetic landscape for helical switching.

Torgerson CD, Hiller DA, Stav S, Strobel SA.

RNA. 2018 Dec;24(12):1813-1827. doi: 10.1261/rna.067884.118. Epub 2018 Sep 20.

3.

Industrially-Scalable Microencapsulation of Plant Beneficial Bacteria in Dry Cross-Linked Alginate Matrix.

Strobel SA, Allen K, Roberts C, Jimenez D, Scher HB, Jeoh T.

Ind Biotechnol (New Rochelle N Y). 2018 Jun 1;14(3):138-147. doi: 10.1089/ind.2017.0032.

4.

Structures of two aptamers with differing ligand specificity reveal ruggedness in the functional landscape of RNA.

Knappenberger AJ, Reiss CW, Strobel SA.

Elife. 2018 Jun 7;7. pii: e36381. doi: 10.7554/eLife.36381.

5.
6.

Structural basis for ligand binding to the guanidine-II riboswitch.

Reiss CW, Strobel SA.

RNA. 2017 Sep;23(9):1338-1343. doi: 10.1261/rna.061804.117. Epub 2017 Jun 9.

7.

Fluoride export (FEX) proteins from fungi, plants and animals are 'single barreled' channels containing one functional and one vestigial ion pore.

Berbasova T, Nallur S, Sells T, Smith KD, Gordon PB, Tausta SL, Strobel SA.

PLoS One. 2017 May 4;12(5):e0177096. doi: 10.1371/journal.pone.0177096. eCollection 2017.

8.

Mycofumigation through production of the volatile DNA-methylating agent N-methyl-N-nitrosoisobutyramide by fungi in the genus Muscodor.

Hutchings ML, Alpha-Cobb CJ, Hiller DA, Berro J, Strobel SA.

J Biol Chem. 2017 May 5;292(18):7358-7371. doi: 10.1074/jbc.M117.779009. Epub 2017 Mar 10.

9.

Structural Basis for Ligand Binding to the Guanidine-I Riboswitch.

Reiss CW, Xiong Y, Strobel SA.

Structure. 2017 Jan 3;25(1):195-202. doi: 10.1016/j.str.2016.11.020. Epub 2016 Dec 22.

10.

Singlet glycine riboswitches bind ligand as well as tandem riboswitches.

Ruff KM, Muhammad A, McCown PJ, Breaker RR, Strobel SA.

RNA. 2016 Nov;22(11):1728-1738. Epub 2016 Sep 22.

11.

Genome of Diaporthe sp. provides insights into the potential inter-phylum transfer of a fungal sesquiterpenoid biosynthetic pathway.

de Sena Filho JG, Quin MB, Spakowicz DJ, Shaw JJ, Kucera K, Dunican B, Strobel SA, Schmidt-Dannert C.

Fungal Biol. 2016 Aug;120(8):1050-1063. doi: 10.1016/j.funbio.2016.04.001. Epub 2016 Apr 12.

12.

Nuclease-Resistant c-di-AMP Derivatives That Differentially Recognize RNA and Protein Receptors.

Meehan RE, Torgerson CD, Gaffney BL, Jones RA, Strobel SA.

Biochemistry. 2016 Feb 16;55(6):837-49. doi: 10.1021/acs.biochem.5b00965. Epub 2016 Feb 3.

13.

Pyrrolocin A, a 3-Decalinoyltetramic Acid with Selective Biological Activity, Isolated from Amazonian Cultures of the Novel Endophyte Diaporthales sp. E6927E.

Patridge EV, Darnell A, Kucera K, Phillips GM, Bokesch HR, Gustafson KR, Spakowicz DJ, Zhou L, Hungerford WM, Plummer M, Hoyer D, Narváez-Trujillo A, Phillips AJ, Strobel SA.

Nat Prod Commun. 2015 Oct;10(10):1649-54.

PMID:
26669095
14.

Stelliosphaerols A and B, Sesquiterpene-Polyol Conjugates from an Ecuadorian Fungal Endophyte.

Forcina GC, Castro A, Bokesch HR, Spakowicz DJ, Legaspi ME, Kucera K, Villota S, Narváez-Trujillo A, McMahon JB, Gustafson KR, Strobel SA.

J Nat Prod. 2015 Dec 24;78(12):3005-10. doi: 10.1021/acs.jnatprod.5b00749. Epub 2015 Dec 14.

15.

The Biological Diversity and Production of Volatile Organic Compounds by Stem-Inhabiting Endophytic Fungi of Ecuador.

Rundell SM, Spakowicz DJ, Narváez-Trujillo A, Strobel SA.

J Fungi (Basel). 2015 Dec 2;1(3):384-396. doi: 10.3390/jof1030384.

16.

Transition State Charge Stabilization and Acid-Base Catalysis of mRNA Cleavage by the Endoribonuclease RelE.

Dunican BF, Hiller DA, Strobel SA.

Biochemistry. 2015 Dec 1;54(47):7048-57. doi: 10.1021/acs.biochem.5b00866. Epub 2015 Nov 12.

17.

Yeast Fex1p Is a Constitutively Expressed Fluoride Channel with Functional Asymmetry of Its Two Homologous Domains.

Smith KD, Gordon PB, Rivetta A, Allen KE, Berbasova T, Slayman C, Strobel SA.

J Biol Chem. 2015 Aug 7;290(32):19874-87. doi: 10.1074/jbc.M115.651976. Epub 2015 Jun 8.

18.

Biosynthesis of hydrocarbons and volatile organic compounds by fungi: bioengineering potential.

Spakowicz DJ, Strobel SA.

Appl Microbiol Biotechnol. 2015 Jun;99(12):4943-51. doi: 10.1007/s00253-015-6641-y. Epub 2015 May 10. Review.

19.

Fusaric acid induces a notochord malformation in zebrafish via copper chelation.

Yin ES, Rakhmankulova M, Kucera K, de Sena Filho JG, Portero CE, Narváez-Trujillo A, Holley SA, Strobel SA.

Biometals. 2015 Aug;28(4):783-9. doi: 10.1007/s10534-015-9855-7. Epub 2015 Apr 26.

PMID:
25913293
20.

Biosynthesis and genomic analysis of medium-chain hydrocarbon production by the endophytic fungal isolate Nigrograna mackinnonii E5202H.

Shaw JJ, Spakowicz DJ, Dalal RS, Davis JH, Lehr NA, Dunican BF, Orellana EA, Narváez-Trujillo A, Strobel SA.

Appl Microbiol Biotechnol. 2015 Apr;99(8):3715-28. doi: 10.1007/s00253-014-6206-5. Epub 2015 Feb 12.

21.

Identification of a fungal 1,8-cineole synthase from Hypoxylon sp. with specificity determinants in common with the plant synthases.

Shaw JJ, Berbasova T, Sasaki T, Jefferson-George K, Spakowicz DJ, Dunican BF, Portero CE, Narváez-Trujillo A, Strobel SA.

J Biol Chem. 2015 Mar 27;290(13):8511-26. doi: 10.1074/jbc.M114.636159. Epub 2015 Feb 3.

22.

Mycofumigation by the volatile organic compound-producing Fungus Muscodor albus induces bacterial cell death through DNA damage.

Alpha CJ, Campos M, Jacobs-Wagner C, Strobel SA.

Appl Environ Microbiol. 2015 Feb;81(3):1147-56. doi: 10.1128/AEM.03294-14. Epub 2014 Dec 1.

23.

Ligand binding by the tandem glycine riboswitch depends on aptamer dimerization but not double ligand occupancy.

Ruff KM, Strobel SA.

RNA. 2014 Nov;20(11):1775-88. doi: 10.1261/rna.047266.114. Epub 2014 Sep 22.

24.

Bacterial toxin RelE: a highly efficient ribonuclease with exquisite substrate specificity using atypical catalytic residues.

Griffin MA, Davis JH, Strobel SA.

Biochemistry. 2013 Dec 3;52(48):8633-42. doi: 10.1021/bi401325c. Epub 2013 Nov 19.

25.

Biochemistry: Metal ghosts in the splicing machine.

Strobel SA.

Nature. 2013 Nov 14;503(7475):201-2. doi: 10.1038/nature12705. Epub 2013 Nov 6. No abstract available.

PMID:
24196709
26.

Eukaryotic resistance to fluoride toxicity mediated by a widespread family of fluoride export proteins.

Li S, Smith KD, Davis JH, Gordon PB, Breaker RR, Strobel SA.

Proc Natl Acad Sci U S A. 2013 Nov 19;110(47):19018-23. doi: 10.1073/pnas.1310439110. Epub 2013 Oct 30.

27.

Xyolide, a bioactive nonenolide from an Amazonian endophytic fungus, Xylaria feejeensis.

Baraban EG, Morin JB, Phillips GM, Phillips AJ, Strobel SA, Handelsman J.

Tetrahedron Lett. 2013 Jul 31;54(31):4058-4060.

28.

Identification of c-di-GMP derivatives resistant to an EAL domain phosphodiesterase.

Shanahan CA, Gaffney BL, Jones RA, Strobel SA.

Biochemistry. 2013 Jan 15;52(2):365-77. doi: 10.1021/bi301510v. Epub 2013 Jan 3.

29.

Linguistic analysis of project ownership for undergraduate research experiences.

Hanauer DI, Frederick J, Fotinakes B, Strobel SA.

CBE Life Sci Educ. 2012 Winter;11(4):378-85. doi: 10.1187/cbe.12-04-0043.

30.

IBI series winner. Student-directed discovery of the plant microbiome and its products.

Bascom-Slack CA, Arnold AE, Strobel SA.

Science. 2012 Oct 26;338(6106):485-6. doi: 10.1126/science.1215227. No abstract available.

31.

The bacterial second messenger c-di-GMP: probing interactions with protein and RNA binding partners using cyclic dinucleotide analogs.

Shanahan CA, Strobel SA.

Org Biomol Chem. 2012 Dec 14;10(46):9113-29. doi: 10.1039/c2ob26724a. Epub 2012 Oct 29. Review.

32.

Genomic analysis of the hydrocarbon-producing, cellulolytic, endophytic fungus Ascocoryne sarcoides.

Gianoulis TA, Griffin MA, Spakowicz DJ, Dunican BF, Alpha CJ, Sboner A, Sismour AM, Kodira C, Egholm M, Church GM, Gerstein MB, Strobel SA.

PLoS Genet. 2012;8(3):e1002558. doi: 10.1371/journal.pgen.1002558. Epub 2012 Mar 1.

33.

Structural and biochemical characterization of linear dinucleotide analogues bound to the c-di-GMP-I aptamer.

Smith KD, Lipchock SV, Strobel SA.

Biochemistry. 2012 Jan 10;51(1):425-32. doi: 10.1021/bi2016662. Epub 2011 Dec 27.

34.

Analysis of enzymatic transacylase Brønsted studies with application to the ribosome.

Kingery DA, Strobel SA.

Acc Chem Res. 2012 Apr 17;45(4):495-503. doi: 10.1021/ar100162b. Epub 2011 Nov 28. Review.

PMID:
22122380
35.

Competencies: a cure for pre-med curriculum.

Anderson WA, Amasino RM, Ares M Jr, Banerjee U, Bartel B, Corces VG, Drennan CL, Elgin SC, Epstein IR, Fanning E, Guillette LJ Jr, Handelsman J, Hatfull GF, Hoy RR, Kelley D, Leinwand LA, Losick R, Lu Y, Lynn DG, Neuhauser C, O'Dowd DK, Olivera T, Pevzner P, Richards-Kortum RR, Rine J, Sah RL, Strobel SA, Walker GC, Walt DR, Warner IM, Wessler S, Willard HF, Zare RN.

Science. 2011 Nov 11;334(6057):760-1. doi: 10.1126/science.334.6057.760-b. No abstract available.

PMID:
22076362
36.

Minimal transition state charge stabilization of the oxyanion during peptide bond formation by the ribosome.

Carrasco N, Hiller DA, Strobel SA.

Biochemistry. 2011 Dec 6;50(48):10491-8. doi: 10.1021/bi201290s. Epub 2011 Nov 9.

PMID:
22035282
37.

The chemical versatility of RNA.

Hiller DA, Strobel SA.

Philos Trans R Soc Lond B Biol Sci. 2011 Oct 27;366(1580):2929-35. doi: 10.1098/rstb.2011.0143.

38.

Differential analogue binding by two classes of c-di-GMP riboswitches.

Shanahan CA, Gaffney BL, Jones RA, Strobel SA.

J Am Chem Soc. 2011 Oct 5;133(39):15578-92. doi: 10.1021/ja204650q. Epub 2011 Sep 8.

39.

glmS Riboswitch binding to the glucosamine-6-phosphate α-anomer shifts the pKa toward neutrality.

Davis JH, Dunican BF, Strobel SA.

Biochemistry. 2011 Aug 23;50(33):7236-42. doi: 10.1021/bi200471c. Epub 2011 Jul 27.

40.

A two-step chemical mechanism for ribosome-catalysed peptide bond formation.

Hiller DA, Singh V, Zhong M, Strobel SA.

Nature. 2011 Jul 17;476(7359):236-9. doi: 10.1038/nature10248.

41.

Biodegradation of polyester polyurethane by endophytic fungi.

Russell JR, Huang J, Anand P, Kucera K, Sandoval AG, Dantzler KW, Hickman D, Jee J, Kimovec FM, Koppstein D, Marks DH, Mittermiller PA, Núñez SJ, Santiago M, Townes MA, Vishnevetsky M, Williams NE, Vargas MP, Boulanger LA, Bascom-Slack C, Strobel SA.

Appl Environ Microbiol. 2011 Sep;77(17):6076-84. doi: 10.1128/AEM.00521-11. Epub 2011 Jul 15.

42.

The 2'-OH group of the peptidyl-tRNA stabilizes an active conformation of the ribosomal PTC.

Zaher HS, Shaw JJ, Strobel SA, Green R.

EMBO J. 2011 May 6;30(12):2445-53. doi: 10.1038/emboj.2011.142.

43.

Structural basis of differential ligand recognition by two classes of bis-(3'-5')-cyclic dimeric guanosine monophosphate-binding riboswitches.

Smith KD, Shanahan CA, Moore EL, Simon AC, Strobel SA.

Proc Natl Acad Sci U S A. 2011 May 10;108(19):7757-62. doi: 10.1073/pnas.1018857108. Epub 2011 Apr 25.

44.

Structural basis of cooperative ligand binding by the glycine riboswitch.

Butler EB, Xiong Y, Wang J, Strobel SA.

Chem Biol. 2011 Mar 25;18(3):293-8. doi: 10.1016/j.chembiol.2011.01.013.

45.

Interactions of the c-di-GMP riboswitch with its second messenger ligand.

Smith KD, Strobel SA.

Biochem Soc Trans. 2011 Apr;39(2):647-51. doi: 10.1042/BST0390647. Review.

46.

Science education. Changing the culture of science education at research universities.

Anderson WA, Banerjee U, Drennan CL, Elgin SC, Epstein IR, Handelsman J, Hatfull GF, Losick R, O'Dowd DK, Olivera BM, Strobel SA, Walker GC, Warner IM.

Science. 2011 Jan 14;331(6014):152-3. doi: 10.1126/science.1198280. No abstract available.

PMID:
21233371
47.

Identification of a tertiary interaction important for cooperative ligand binding by the glycine riboswitch.

Erion TV, Strobel SA.

RNA. 2011 Jan;17(1):74-84. doi: 10.1261/rna.2271511. Epub 2010 Nov 23.

48.

Volatile organic compound production by organisms in the genus Ascocoryne and a re-evaluation of myco-diesel production by NRRL 50072.

Griffin MA, Spakowicz DJ, Gianoulis TA, Strobel SA.

Microbiology. 2010 Dec;156(Pt 12):3814-29. doi: 10.1099/mic.0.041327-0. Epub 2010 Aug 12.

PMID:
20705658
49.

Structural and biochemical determinants of ligand binding by the c-di-GMP riboswitch .

Smith KD, Lipchock SV, Livingston AL, Shanahan CA, Strobel SA.

Biochemistry. 2010 Aug 31;49(34):7351-9. doi: 10.1021/bi100671e.

50.

Catalytic importance of a protonated adenosine in the hairpin ribozyme active site.

Suydam IT, Levandoski SD, Strobel SA.

Biochemistry. 2010 May 4;49(17):3723-32. doi: 10.1021/bi100234v.

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