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Items: 21

1.

siRNA-Finder (si-Fi) Software for RNAi-Target Design and Off-Target Prediction.

Lück S, Kreszies T, Strickert M, Schweizer P, Kuhlmann M, Douchkov D.

Front Plant Sci. 2019 Aug 15;10:1023. doi: 10.3389/fpls.2019.01023. eCollection 2019.

2.

Down-regulation of the sucrose transporters HvSUT1 and HvSUT2 affects sucrose homeostasis along its delivery path in barley grains.

Radchuk V, Riewe D, Peukert M, Matros A, Strickert M, Radchuk R, Weier D, Steinbiß HH, Sreenivasulu N, Weschke W, Weber H.

J Exp Bot. 2017 Jul 20;68(16):4595-4612. doi: 10.1093/jxb/erx266.

3.

DistAMo: A Web-Based Tool to Characterize DNA-Motif Distribution on Bacterial Chromosomes.

Sobetzko P, Jelonek L, Strickert M, Han W, Goesmann A, Waldminghaus T.

Front Microbiol. 2016 Mar 11;7:283. doi: 10.3389/fmicb.2016.00283. eCollection 2016.

4.

Comprehensive transcriptome analysis unravels the existence of crucial genes regulating primary metabolism during adventitious root formation in Petunia hybrida.

Ahkami A, Scholz U, Steuernagel B, Strickert M, Haensch KT, Druege U, Reinhardt D, Nouri E, von Wirén N, Franken P, Hajirezaei MR.

PLoS One. 2014 Jun 30;9(6):e100997. doi: 10.1371/journal.pone.0100997. eCollection 2014.

5.

Salinity stress in roots of contrasting barley genotypes reveals time-distinct and genotype-specific patterns for defined proteins.

Witzel K, Matros A, Strickert M, Kaspar S, Peukert M, Mühling KH, Börner A, Mock HP.

Mol Plant. 2014 Feb;7(2):336-55. doi: 10.1093/mp/sst063. Epub 2013 Sep 4.

6.

Dispom: a discriminative de-novo motif discovery tool based on the jstacs library.

Grau J, Keilwagen J, Gohr A, Paponov IA, Posch S, Seifert M, Strickert M, Grosse I.

J Bioinform Comput Biol. 2013 Feb;11(1):1340006. doi: 10.1142/S0219720013400064. Epub 2013 Jan 21.

PMID:
23427988
7.

Parsimonious higher-order hidden Markov models for improved array-CGH analysis with applications to Arabidopsis thaliana.

Seifert M, Gohr A, Strickert M, Grosse I.

PLoS Comput Biol. 2012 Jan;8(1):e1002286. doi: 10.1371/journal.pcbi.1002286. Epub 2012 Jan 12.

8.

Target-Driven Subspace Mapping Methods and Their Applicability Domain Estimation.

Soto AJ, Vazquez GE, Strickert M, Ponzoni I.

Mol Inform. 2011 Sep;30(9):779-89. doi: 10.1002/minf.201100053. Epub 2011 Aug 3.

PMID:
27467410
9.

Exploiting prior knowledge and gene distances in the analysis of tumor expression profiles with extended Hidden Markov Models.

Seifert M, Strickert M, Schliep A, Grosse I.

Bioinformatics. 2011 Jun 15;27(12):1645-52. doi: 10.1093/bioinformatics/btr199. Epub 2011 Apr 21.

PMID:
21511716
10.

De-novo discovery of differentially abundant transcription factor binding sites including their positional preference.

Keilwagen J, Grau J, Paponov IA, Posch S, Strickert M, Grosse I.

PLoS Comput Biol. 2011 Feb 10;7(2):e1001070. doi: 10.1371/journal.pcbi.1001070. Erratum in: PLoS Comput Biol. 2011 Oct;7(10). doi: 10.1371/annotation/a0b541dc-472b-4076-a435-499ce9519335.

11.

ABA biosynthesis and degradation contributing to ABA homeostasis during barley seed development under control and terminal drought-stress conditions.

Seiler C, Harshavardhan VT, Rajesh K, Reddy PS, Strickert M, Rolletschek H, Scholz U, Wobus U, Sreenivasulu N.

J Exp Bot. 2011 May;62(8):2615-32. doi: 10.1093/jxb/erq446. Epub 2011 Feb 2.

PMID:
21289079
12.

De-regulation of abscisic acid contents causes abnormal endosperm development in the barley mutant seg8.

Sreenivasulu N, Radchuk V, Alawady A, Borisjuk L, Weier D, Staroske N, Fuchs J, Miersch O, Strickert M, Usadel B, Wobus U, Grimm B, Weber H, Weschke W.

Plant J. 2010 Nov;64(4):589-603. doi: 10.1111/j.1365-313X.2010.04350.x. Epub 2010 Oct 5.

13.

Array platforms and bioinformatics tools for the analysis of plant transcriptome in response to abiotic stress.

Sreenivasulu N, Sunkar R, Wobus U, Strickert M.

Methods Mol Biol. 2010;639:71-93. doi: 10.1007/978-1-60761-702-0_5. Review.

PMID:
20387041
14.

Unifying generative and discriminative learning principles.

Keilwagen J, Grau J, Posch S, Strickert M, Grosse I.

BMC Bioinformatics. 2010 Feb 22;11:98. doi: 10.1186/1471-2105-11-98.

15.

Increasing sucrose uptake capacity of wheat grains stimulates storage protein synthesis.

Weichert N, Saalbach I, Weichert H, Kohl S, Erban A, Kopka J, Hause B, Varshney A, Sreenivasulu N, Strickert M, Kumlehn J, Weschke W, Weber H.

Plant Physiol. 2010 Feb;152(2):698-710. doi: 10.1104/pp.109.150854. Epub 2009 Dec 14.

16.

Utilizing gene pair orientations for HMM-based analysis of promoter array ChIP-chip data.

Seifert M, Keilwagen J, Strickert M, Grosse I.

Bioinformatics. 2009 Aug 15;25(16):2118-25. doi: 10.1093/bioinformatics/btp276. Epub 2009 Apr 28.

17.

Different hormonal regulation of cellular differentiation and function in nucellar projection and endosperm transfer cells: a microdissection-based transcriptome study of young barley grains.

Thiel J, Weier D, Sreenivasulu N, Strickert M, Weichert N, Melzer M, Czauderna T, Wobus U, Weber H, Weschke W.

Plant Physiol. 2008 Nov;148(3):1436-52. doi: 10.1104/pp.108.127001. Epub 2008 Sep 10.

18.

Barley grain maturation and germination: metabolic pathway and regulatory network commonalities and differences highlighted by new MapMan/PageMan profiling tools.

Sreenivasulu N, Usadel B, Winter A, Radchuk V, Scholz U, Stein N, Weschke W, Strickert M, Close TJ, Stitt M, Graner A, Wobus U.

Plant Physiol. 2008 Apr;146(4):1738-58. doi: 10.1104/pp.107.111781. Epub 2008 Feb 15.

19.
20.

Gene expression patterns reveal tissue-specific signaling networks controlling programmed cell death and ABA- regulated maturation in developing barley seeds.

Sreenivasulu N, Radchuk V, Strickert M, Miersch O, Weschke W, Wobus U.

Plant J. 2006 Jul;47(2):310-27. Epub 2006 Jun 8. Erratum in: Plant J. 2006 Sep;47(6):987.

21.

Recursive self-organizing network models.

Hammer B, Micheli A, Sperduti A, Strickert M.

Neural Netw. 2004 Oct-Nov;17(8-9):1061-85.

PMID:
15555852

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