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Items: 23


Computational Framework for High-Quality Production and Large-Scale Evolutionary Analysis of Metagenome Assembled Genomes.

Murovec B, Deutsch L, Stres B.

Mol Biol Evol. 2020 Feb 1;37(2):593-598. doi: 10.1093/molbev/msz237.


Shift in the paradigm towards next-generation microbiology.

Stres B, Kronegger L.

FEMS Microbiol Lett. 2019 Aug 1;366(15). pii: fnz159. doi: 10.1093/femsle/fnz159.


Composition of the cutaneous bacterial community of a cave amphibian, Proteus anguinus.

Kostanjšek R, Prodan Y, Stres B, Trontelj P.

FEMS Microbiol Ecol. 2019 Mar 1;95(3). doi: 10.1093/femsec/fiz007.


Effect of the Nursing Mother on the Gut Microbiome of the Offspring During Early Mouse Development.

Treichel NS, Prevoršek Z, Mrak V, Kostrić M, Vestergaard G, Foesel B, Pfeiffer S, Stres B, Schöler A, Schloter M.

Microb Ecol. 2019 Aug;78(2):517-527. doi: 10.1007/s00248-019-01317-7. Epub 2019 Jan 10.


1H NMR metabolomics of microbial metabolites in the four MW agricultural biogas plant reactors: A case study of inhibition mirroring the acute rumen acidosis symptoms.

Murovec B, Makuc D, Kolbl Repinc S, Prevoršek Z, Zavec D, Šket R, Pečnik K, Plavec J, Stres B.

J Environ Manage. 2018 Sep 15;222:428-435. doi: 10.1016/j.jenvman.2018.05.068. Epub 2018 Jun 9.


Intestinal Metagenomes and Metabolomes in Healthy Young Males: Inactivity and Hypoxia Generated Negative Physiological Symptoms Precede Microbial Dysbiosis.

Šket R, Debevec T, Kublik S, Schloter M, Schoeller A, Murovec B, Vogel Mikuš K, Makuc D, Pečnik K, Plavec J, Mekjavić IB, Eiken O, Prevoršek Z, Stres B.

Front Physiol. 2018 Mar 13;9:198. doi: 10.3389/fphys.2018.00198. eCollection 2018.


Full-scale agricultural biogas plant metal content and process parameters in relation to bacterial and archaeal microbial communities over 2.5 year span.

Repinc SK, Šket R, Zavec D, Mikuš KV, Fermoso FG, Stres B.

J Environ Manage. 2018 May 1;213:566-574. doi: 10.1016/j.jenvman.2018.02.058. Epub 2018 Feb 21.


Community effort endorsing multiscale modelling, multiscale data science and multiscale computing for systems medicine.

Zanin M, Chorbev I, Stres B, Stalidzans E, Vera J, Tieri P, Castiglione F, Groen D, Zheng H, Baumbach J, Schmid JA, Basilio J, Klimek P, Debeljak N, Rozman D, Schmidt HHHW.

Brief Bioinform. 2019 May 21;20(3):1057-1062. doi: 10.1093/bib/bbx160.


Hypoxia and inactivity related physiological changes precede or take place in absence of significant rearrangements in bacterial community structure: The PlanHab randomized trial pilot study.

Šket R, Treichel N, Kublik S, Debevec T, Eiken O, Mekjavić I, Schloter M, Vital M, Chandler J, Tiedje JM, Murovec B, Prevoršek Z, Likar M, Stres B.

PLoS One. 2017 Dec 6;12(12):e0188556. doi: 10.1371/journal.pone.0188556. eCollection 2017.


Hypoxia and Inactivity Related Physiological Changes (Constipation, Inflammation) Are Not Reflected at the Level of Gut Metabolites and Butyrate Producing Microbial Community: The PlanHab Study.

Šket R, Treichel N, Debevec T, Eiken O, Mekjavic I, Schloter M, Vital M, Chandler J, Tiedje JM, Murovec B, Prevoršek Z, Stres B.

Front Physiol. 2017 May 4;8:250. doi: 10.3389/fphys.2017.00250. eCollection 2017.


Methane Yield Database: Online infrastructure and bioresource for methane yield data and related metadata.

Murovec B, Kolbl S, Stres B.

Bioresour Technol. 2015;189:217-223. doi: 10.1016/j.biortech.2015.04.021. Epub 2015 Apr 11.


Recently deglaciated high-altitude soils of the Himalaya: diverse environments, heterogenous bacterial communities and long-range dust inputs from the upper troposphere.

Stres B, Sul WJ, Murovec B, Tiedje JM.

PLoS One. 2013 Sep 26;8(9):e76440. doi: 10.1371/journal.pone.0076440. eCollection 2013. Erratum in: PLoS One. 2014;9(1). doi:10.1371/annotation/1406824c-f082-400b-8fc7-4995c97a6249.


Biotic and abiotic processes contribute to successful anaerobic degradation of cyanide by UASB reactor biomass treating brewery waste water.

Novak D, Franke-Whittle IH, Pirc ET, Jerman V, Insam H, Logar RM, Stres B.

Water Res. 2013 Jul 1;47(11):3644-53. doi: 10.1016/j.watres.2013.04.027. Epub 2013 Apr 25.


General Microbial Community Flexibility in Biochemical Methane Potential Assay is Highly Correlated to Initial Biogas Production Rates.

Novak D, Stres B, Osojnik G, Skrjanec I, Marinšek-Logar R.

Acta Chim Slov. 2011 Mar;58(1):171-5.


Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment.

Stres B, Philippot L, Faganeli J, Tiedje JM.

FEMS Microbiol Ecol. 2010 Nov;74(2):323-35. doi: 10.1111/j.1574-6941.2010.00951.x. Epub 2010 Aug 23.


DNA encoding for an efficient 'Omics processing.

Murovec B, Tiedje JM, Stres B.

Comput Methods Programs Biomed. 2010 Nov;100(2):175-90. doi: 10.1016/j.cmpb.2010.03.014. Epub 2010 May 4.


Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities.

Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF.

Appl Environ Microbiol. 2009 Dec;75(23):7537-41. doi: 10.1128/AEM.01541-09. Epub 2009 Oct 2.


BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases.

Stres B, Tiedje JM, Murovec B.

Bioinformatics. 2009 Jun 15;25(12):1556-8. doi: 10.1093/bioinformatics/btp254. Epub 2009 Apr 15.


Influence of temperature and soil water content on bacterial, archaeal and denitrifying microbial communities in drained fen grassland soil microcosms.

Stres B, Danevcic T, Pal L, Fuka MM, Resman L, Leskovec S, Hacin J, Stopar D, Mahne I, Mandic-Mulec I.

FEMS Microbiol Ecol. 2008 Oct;66(1):110-22. doi: 10.1111/j.1574-6941.2008.00555.x. Epub 2008 Aug 15.


Phylogenetic analysis of nitrite, nitric oxide, and nitrous oxide respiratory enzymes reveal a complex evolutionary history for denitrification.

Jones CM, Stres B, Rosenquist M, Hallin S.

Mol Biol Evol. 2008 Sep;25(9):1955-66. doi: 10.1093/molbev/msn146. Epub 2008 Jul 8.


Nitrous oxide reductase (nosZ) gene fragments differ between native and cultivated Michigan soils.

Stres B, Mahne I, Avgustin G, Tiedje JM.

Appl Environ Microbiol. 2004 Jan;70(1):301-9.

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