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Items: 1 to 50 of 84

1.

Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation.

Danso D, Chow J, Streit WR.

Appl Environ Microbiol. 2019 Sep 17;85(19). pii: e01095-19. doi: 10.1128/AEM.01095-19. Print 2019 Oct 1. Review.

2.

High level production of flavonoid rhamnosides by metagenome-derived Glycosyltransferase C in Escherichia coli utilizing dextrins of starch as a single carbon source.

Ruprecht C, Bönisch F, Ilmberger N, Heyer TV, Haupt ETK, Streit WR, Rabausch U.

Metab Eng. 2019 Sep;55:212-219. doi: 10.1016/j.ymben.2019.07.002. Epub 2019 Jul 16.

3.

Phenotypic Heterogeneity in Bacterial Quorum Sensing Systems.

Bettenworth V, Steinfeld B, Duin H, Petersen K, Streit WR, Bischofs I, Becker A.

J Mol Biol. 2019 Apr 30. pii: S0022-2836(19)30244-X. doi: 10.1016/j.jmb.2019.04.036. [Epub ahead of print] Review.

PMID:
31051177
4.

A New Extremely Halophilic, Calcium-Independent and Surfactant-Resistant Alpha-Amylase from Alkalibacterium sp. SL3.

Wang G, Luo M, Lin J, Lin Y, Yan R, Streit WR, Ye X.

J Microbiol Biotechnol. 2019 May 28;29(5):765-775. doi: 10.4014/jmb.1901.01038.

5.

Igni18, a novel metallo-hydrolase from the hyperthermophilic archaeon Ignicoccus hospitalis KIN4/I: cloning, expression, purification and X-ray analysis.

Kobus S, Perez-Garcia P, Hoeppner A, Holzscheck N, Kovacic F, Streit WR, Jaeger KE, Chow J, Smits SHJ.

Acta Crystallogr F Struct Biol Commun. 2019 Apr 1;75(Pt 4):307-311. doi: 10.1107/S2053230X19002851. Epub 2019 Apr 2.

PMID:
30950832
6.

High-throughput amplicon sequencing demonstrates extensive diversity of xylanase genes in the sediment of soda lake Dabusu.

Wang G, Ren Y, Ng TB, Streit WR, Ye X.

Biotechnol Lett. 2019 Mar;41(3):409-418. doi: 10.1007/s10529-019-02646-w. Epub 2019 Jan 14.

PMID:
30644013
7.

Decoding the ocean's microbiological secrets for marine enzyme biodiscovery.

Ferrer M, Méndez-García C, Bargiela R, Chow J, Alonso S, García-Moyano A, Bjerga GEK, Steen IH, Schwabe T, Blom C, Vester J, Weckbecker A, Shahgaldian P, de Carvalho CCCR, Meskys R, Zanaroli G, Glöckner FO, Fernández-Guerra A, Thambisetty S, de la Calle F, Golyshina OV, Yakimov MM, Jaeger KE, Yakunin AF, Streit WR, McMeel O, Calewaert JB, Tonné N, Golyshin PN; INMARE Consortium.

FEMS Microbiol Lett. 2019 Jan 1;366(1). doi: 10.1093/femsle/fny285. Review.

8.

Long-term investigation of microbial community composition and transcription patterns in a biogas plant undergoing ammonia crisis.

Fischer MA, Güllert S, Refai S, Künzel S, Deppenmeier U, Streit WR, Schmitz RA.

Microb Biotechnol. 2019 Mar;12(2):305-323. doi: 10.1111/1751-7915.13313. Epub 2018 Oct 31.

9.

The Thaumarchaeon N. gargensis carries functional bioABD genes and has a promiscuous E. coli ΔbioH-complementing esterase EstN1.

Chow J, Danso D, Ferrer M, Streit WR.

Sci Rep. 2018 Sep 14;8(1):13823. doi: 10.1038/s41598-018-32059-0.

10.

Analysis of Phylogenetic Variation of Stenotrophomonas maltophilia Reveals Human-Specific Branches.

Steinmann J, Mamat U, Abda EM, Kirchhoff L, Streit WR, Schaible UE, Niemann S, Kohl TA.

Front Microbiol. 2018 Apr 26;9:806. doi: 10.3389/fmicb.2018.00806. eCollection 2018.

11.

Structure of a hyperthermostable carbonic anhydrase identified from an active hydrothermal vent chimney.

Fredslund F, Borchert MS, Poulsen JN, Mortensen SB, Perner M, Streit WR, Lo Leggio L.

Enzyme Microb Technol. 2018 Jul;114:48-54. doi: 10.1016/j.enzmictec.2018.03.009. Epub 2018 Mar 30.

PMID:
29685353
12.

New Insights into the Function and Global Distribution of Polyethylene Terephthalate (PET)-Degrading Bacteria and Enzymes in Marine and Terrestrial Metagenomes.

Danso D, Schmeisser C, Chow J, Zimmermann W, Wei R, Leggewie C, Li X, Hazen T, Streit WR.

Appl Environ Microbiol. 2018 Apr 2;84(8). pii: e02773-17. doi: 10.1128/AEM.02773-17. Print 2018 Apr 15.

13.

Determinants and Prediction of Esterase Substrate Promiscuity Patterns.

Martínez-Martínez M, Coscolín C, Santiago G, Chow J, Stogios PJ, Bargiela R, Gertler C, Navarro-Fernández J, Bollinger A, Thies S, Méndez-García C, Popovic A, Brown G, Chernikova TN, García-Moyano A, Bjerga GEK, Pérez-García P, Hai T, Del Pozo MV, Stokke R, Steen IH, Cui H, Xu X, Nocek BP, Alcaide M, Distaso M, Mesa V, Peláez AI, Sánchez J, Buchholz PCF, Pleiss J, Fernández-Guerra A, Glöckner FO, Golyshina OV, Yakimov MM, Savchenko A, Jaeger KE, Yakunin AF, Streit WR, Golyshin PN, Guallar V, Ferrer M, The Inmare Consortium.

ACS Chem Biol. 2018 Jan 19;13(1):225-234. doi: 10.1021/acschembio.7b00996. Epub 2017 Dec 20.

PMID:
29182315
14.

Insights into Microalga and Bacteria Interactions of Selected Phycosphere Biofilms Using Metagenomic, Transcriptomic, and Proteomic Approaches.

Krohn-Molt I, Alawi M, Förstner KU, Wiegandt A, Burkhardt L, Indenbirken D, Thieß M, Grundhoff A, Kehr J, Tholey A, Streit WR.

Front Microbiol. 2017 Oct 10;8:1941. doi: 10.3389/fmicb.2017.01941. eCollection 2017.

15.

Recombinant RNA Polymerase from Geobacillus sp. GHH01 as tool for rapid generation of metagenomic RNAs using in vitro technologies.

Kinfu BM, Jahnke M, Janus M, Besirlioglu V, Roggenbuck M, Meurer R, Vojcic L, Borchert M, Schwaneberg U, Chow J, Streit WR.

Biotechnol Bioeng. 2017 Dec;114(12):2739-2752. doi: 10.1002/bit.26436. Epub 2017 Sep 19.

PMID:
28842992
16.

Biocatalytic Asymmetric Phosphorylation Catalyzed by Recombinant Glycerate-2-Kinase.

Hardt N, Kinfu BM, Chow J, Schoenenberger B, Streit WR, Obkircher M, Wohlgemuth R.

Chembiochem. 2017 Aug 4;18(15):1518-1522. doi: 10.1002/cbic.201700201. Epub 2017 Jun 19.

PMID:
28421660
17.

The Absence of the N-acyl-homoserine-lactone Autoinducer Synthase Genes traI and ngrI Increases the Copy Number of the Symbiotic Plasmid in Sinorhizobium fredii NGR234.

Grote J, Krysciak D, Petersen K, Güllert S, Schmeisser C, Förstner KU, Krishnan HB, Schwalbe H, Kubatova N, Streit WR.

Front Microbiol. 2016 Nov 18;7:1858. eCollection 2016.

18.

Screening for Cellulase Encoding Clones in Metagenomic Libraries.

Ilmberger N, Streit WR.

Methods Mol Biol. 2017;1539:205-217.

PMID:
27900691
19.

Molecular Keys to the Janthinobacterium and Duganella spp. Interaction with the Plant Pathogen Fusarium graminearum.

Haack FS, Poehlein A, Kröger C, Voigt CA, Piepenbring M, Bode HB, Daniel R, Schäfer W, Streit WR.

Front Microbiol. 2016 Oct 26;7:1668. eCollection 2016.

20.

IMG/VR: a database of cultured and uncultured DNA Viruses and retroviruses.

Paez-Espino D, Chen IA, Palaniappan K, Ratner A, Chu K, Szeto E, Pillay M, Huang J, Markowitz VM, Nielsen T, Huntemann M, K Reddy TB, Pavlopoulos GA, Sullivan MB, Campbell BJ, Chen F, McMahon K, Hallam SJ, Denef V, Cavicchioli R, Caffrey SM, Streit WR, Webster J, Handley KM, Salekdeh GH, Tsesmetzis N, Setubal JC, Pope PB, Liu WT, Rivers AR, Ivanova NN, Kyrpides NC.

Nucleic Acids Res. 2017 Jan 4;45(D1):D457-D465. doi: 10.1093/nar/gkw1030. Epub 2016 Oct 30.

21.

Sequence-Based Screening for Rare Enzymes: New Insights into the World of AMDases Reveal a Conserved Motif and 58 Novel Enzymes Clustering in Eight Distinct Families.

Maimanakos J, Chow J, Gaßmeyer SK, Güllert S, Busch F, Kourist R, Streit WR.

Front Microbiol. 2016 Aug 25;7:1332. doi: 10.3389/fmicb.2016.01332. eCollection 2016.

22.
23.

Deep metagenome and metatranscriptome analyses of microbial communities affiliated with an industrial biogas fermenter, a cow rumen, and elephant feces reveal major differences in carbohydrate hydrolysis strategies.

Güllert S, Fischer MA, Turaev D, Noebauer B, Ilmberger N, Wemheuer B, Alawi M, Rattei T, Daniel R, Schmitz RA, Grundhoff A, Streit WR.

Biotechnol Biofuels. 2016 Jun 7;9:121. doi: 10.1186/s13068-016-0534-x. eCollection 2016.

24.

GqqA, a novel protein in Komagataeibacter europaeus involved in bacterial quorum quenching and cellulose formation.

Valera MJ, Mas A, Streit WR, Mateo E.

Microb Cell Fact. 2016 May 24;15:88. doi: 10.1186/s12934-016-0482-y.

25.

Phenotypic Heterogeneity Affects Stenotrophomonas maltophilia K279a Colony Morphotypes and β-Lactamase Expression.

Abda EM, Krysciak D, Krohn-Molt I, Mamat U, Schmeisser C, Förstner KU, Schaible UE, Kohl TA, Nieman S, Streit WR.

Front Microbiol. 2015 Dec 2;6:1373. doi: 10.3389/fmicb.2015.01373. eCollection 2015.

26.

Draft Genome Sequence of Komagataeibacter europaeus CECT 8546, a Cellulose-Producing Strain of Vinegar Elaborated by the Traditional Method.

Valera MJ, Poehlein A, Torija MJ, Haack FS, Daniel R, Streit WR, Mateo E, Mas A.

Genome Announc. 2015 Oct 22;3(5). pii: e01231-15. doi: 10.1128/genomeA.01231-15.

27.

Mutations improving production and secretion of extracellular lipase by Burkholderia glumae PG1.

Knapp A, Voget S, Gao R, Zaburannyi N, Krysciak D, Breuer M, Hauer B, Streit WR, Müller R, Daniel R, Jaeger KE.

Appl Microbiol Biotechnol. 2016 Feb;100(3):1265-1273. doi: 10.1007/s00253-015-7041-z. Epub 2015 Oct 17.

28.

Genome-wide RNA sequencing analysis of quorum sensing-controlled regulons in the plant-associated Burkholderia glumae PG1 strain.

Gao R, Krysciak D, Petersen K, Utpatel C, Knapp A, Schmeisser C, Daniel R, Voget S, Jaeger KE, Streit WR.

Appl Environ Microbiol. 2015 Dec;81(23):7993-8007. doi: 10.1128/AEM.01043-15. Epub 2015 Sep 11.

29.

Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.

Ferrer M, Martínez-Martínez M, Bargiela R, Streit WR, Golyshina OV, Golyshin PN.

Microb Biotechnol. 2016 Jan;9(1):22-34. doi: 10.1111/1751-7915.12309. Epub 2015 Aug 14. Review.

30.

Functional Screening of Hydrolytic Activities Reveals an Extremely Thermostable Cellulase from a Deep-Sea Archaeon.

Leis B, Heinze S, Angelov A, Pham VT, Thürmer A, Jebbar M, Golyshin PN, Streit WR, Daniel R, Liebl W.

Front Bioeng Biotechnol. 2015 Jul 1;3:95. doi: 10.3389/fbioe.2015.00095. eCollection 2015.

31.

Phenotypic Heterogeneity, a Phenomenon That May Explain Why Quorum Sensing Does Not Always Result in Truly Homogenous Cell Behavior.

Grote J, Krysciak D, Streit WR.

Appl Environ Microbiol. 2015 Aug 15;81(16):5280-9. doi: 10.1128/AEM.00900-15. Epub 2015 May 29. Review.

32.

Cloning, expression, purification and preliminary X-ray analysis of EstN2, a novel archaeal α/β-hydrolase from Candidatus Nitrososphaera gargensis.

Kaljunen H, Chow J, Streit WR, Mueller-Dieckmann J.

Acta Crystallogr F Struct Biol Commun. 2014 Oct;70(Pt 10):1394-7. doi: 10.1107/S2053230X14018482. Epub 2014 Sep 25.

33.

A comparative metagenome survey of the fecal microbiota of a breast- and a plant-fed Asian elephant reveals an unexpectedly high diversity of glycoside hydrolase family enzymes.

Ilmberger N, Güllert S, Dannenberg J, Rabausch U, Torres J, Wemheuer B, Alawi M, Poehlein A, Chow J, Turaev D, Rattei T, Schmeisser C, Salomon J, Olsen PB, Daniel R, Grundhoff A, Borchert MS, Streit WR.

PLoS One. 2014 Sep 10;9(9):e106707. doi: 10.1371/journal.pone.0106707. eCollection 2014.

34.

Alternative hosts for functional (meta)genome analysis.

Liebl W, Angelov A, Juergensen J, Chow J, Loeschcke A, Drepper T, Classen T, Pietruszka J, Ehrenreich A, Streit WR, Jaeger KE.

Appl Microbiol Biotechnol. 2014 Oct;98(19):8099-109. doi: 10.1007/s00253-014-5961-7. Epub 2014 Aug 5. Review. Erratum in: Appl Microbiol Biotechnol. 2014 Nov;98(21):9149. Pietruzska, Jörg [corrected to Pietruszka, Jörg].

PMID:
25091044
35.

Pseudomonas aeruginosa biofilm growth inhibition on medical plastic materials by immobilized esterases and acylase.

Kisch JM, Utpatel C, Hilterhaus L, Streit WR, Liese A.

Chembiochem. 2014 Sep 5;15(13):1911-9. doi: 10.1002/cbic.201400023. Epub 2014 Jul 15.

PMID:
25044227
36.

Evidence of autoinducer-dependent and -independent heterogeneous gene expression in Sinorhizobium fredii NGR234.

Grote J, Krysciak D, Schorn A, Dahlke RI, Soonvald L, Müller J, Hense BA, Schwarzfischer M, Sauter M, Schmeisser C, Streit WR.

Appl Environ Microbiol. 2014 Sep;80(18):5572-82. doi: 10.1128/AEM.01689-14. Epub 2014 Jul 7.

37.

RNA sequencing analysis of the broad-host-range strain Sinorhizobium fredii NGR234 identifies a large set of genes linked to quorum sensing-dependent regulation in the background of a traI and ngrI deletion mutant.

Krysciak D, Grote J, Rodriguez Orbegoso M, Utpatel C, Förstner KU, Li L, Schmeisser C, Krishnan HB, Streit WR.

Appl Environ Microbiol. 2014 Sep;80(18):5655-71. doi: 10.1128/AEM.01835-14. Epub 2014 Jul 7.

38.

A novel thermoalkalostable esterase from Acidicaldus sp. strain USBA-GBX-499 with enantioselectivity isolated from an acidic hot springs of Colombian Andes.

López G, Chow J, Bongen P, Lauinger B, Pietruszka J, Streit WR, Baena S.

Appl Microbiol Biotechnol. 2014 Oct;98(20):8603-16. doi: 10.1007/s00253-014-5775-7. Epub 2014 May 13.

PMID:
24818691
39.

The metagenome-derived enzyme RhaB opens a new subclass of bacterial B type α-L-rhamnosidases.

Rabausch U, Ilmberger N, Streit WR.

J Biotechnol. 2014 Dec 10;191:38-45. doi: 10.1016/j.jbiotec.2014.04.024. Epub 2014 May 6.

PMID:
24815685
40.

Ionic liquid and deep eutectic solvent-activated CelA2 variants generated by directed evolution.

Lehmann C, Bocola M, Streit WR, Martinez R, Schwaneberg U.

Appl Microbiol Biotechnol. 2014 Jun;98(12):5775-85. doi: 10.1007/s00253-014-5771-y. Epub 2014 May 7.

PMID:
24802079
41.

Meeting report: 1st international functional metagenomics workshop may 7-8, 2012, st. Jacobs, ontario, Canada.

Engel K, Ashby D, Brady SF, Cowan DA, Doemer J, Edwards EA, Fiebig K, Martens EC, McCormac D, Mead DA, Miyazaki K, Moreno-Hagelsieb G, O'Gara F, Reid A, Rose DR, Simonet P, Sjöling S, Smalla K, Streit WR, Tedman-Jones J, Valla S, Wellington EM, Wu CC, Liles MR, Neufeld JD, Sessitsch A, Charles TC.

Stand Genomic Sci. 2013 Apr 15;8(1):106-11. doi: 10.4056/sigs.3406845. eCollection 2013 Apr 15.

42.

Metagenome survey of a multispecies and alga-associated biofilm revealed key elements of bacterial-algal interactions in photobioreactors.

Krohn-Molt I, Wemheuer B, Alawi M, Poehlein A, Güllert S, Schmeisser C, Pommerening-Röser A, Grundhoff A, Daniel R, Hanelt D, Streit WR.

Appl Environ Microbiol. 2013 Oct;79(20):6196-206. doi: 10.1128/AEM.01641-13. Epub 2013 Aug 2.

43.

Functional screening of metagenome and genome libraries for detection of novel flavonoid-modifying enzymes.

Rabausch U, Juergensen J, Ilmberger N, Böhnke S, Fischer S, Schubach B, Schulte M, Streit WR.

Appl Environ Microbiol. 2013 Aug;79(15):4551-63. doi: 10.1128/AEM.01077-13. Epub 2013 May 17.

44.

Complete Genome Sequence of Geobacillus sp. Strain GHH01, a Thermophilic Lipase-Secreting Bacterium.

Wiegand S, Rabausch U, Chow J, Daniel R, Streit WR, Liesegang H.

Genome Announc. 2013 Apr 25;1(2):e0009213. doi: 10.1128/genomeA.00092-13.

45.

The Janthinobacterium sp. HH01 genome encodes a homologue of the V. cholerae CqsA and L. pneumophila LqsA autoinducer synthases.

Hornung C, Poehlein A, Haack FS, Schmidt M, Dierking K, Pohlen A, Schulenburg H, Blokesch M, Plener L, Jung K, Bonge A, Krohn-Molt I, Utpatel C, Timmermann G, Spieck E, Pommerening-Röser A, Bode E, Bode HB, Daniel R, Schmeisser C, Streit WR.

PLoS One. 2013;8(2):e55045. doi: 10.1371/journal.pone.0055045. Epub 2013 Feb 6.

46.

The metagenome-derived enzymes LipS and LipT increase the diversity of known lipases.

Chow J, Kovacic F, Dall Antonia Y, Krauss U, Fersini F, Schmeisser C, Lauinger B, Bongen P, Pietruszka J, Schmidt M, Menyes I, Bornscheuer UT, Eckstein M, Thum O, Liese A, Mueller-Dieckmann J, Jaeger KE, Streit WR.

PLoS One. 2012;7(10):e47665. doi: 10.1371/journal.pone.0047665. Epub 2012 Oct 24.

47.

Cloning, expression, purification and preliminary X-ray analysis of a putative metagenome-derived lipase.

Fersini F, Dall'Antonia Y, Chow J, Streit WR, Mueller-Dieckmann J.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Aug 1;68(Pt 8):923-6. doi: 10.1107/S1744309112025651. Epub 2012 Jul 31.

48.

Complete genome sequence of the broad-host-range strain Sinorhizobium fredii USDA257.

Schuldes J, Rodriguez Orbegoso M, Schmeisser C, Krishnan HB, Daniel R, Streit WR.

J Bacteriol. 2012 Aug;194(16):4483. doi: 10.1128/JB.00966-12.

49.

Screening for cellulases with industrial value and their use in biomass conversion.

Jüergensen J, Ilmberger N, Streit WR.

Methods Mol Biol. 2012;834:1-16. doi: 10.1007/978-1-61779-483-4_1.

PMID:
22144349
50.

Metagenomic cellulases highly tolerant towards the presence of ionic liquids--linking thermostability and halotolerance.

Ilmberger N, Meske D, Juergensen J, Schulte M, Barthen P, Rabausch U, Angelov A, Mientus M, Liebl W, Schmitz RA, Streit WR.

Appl Microbiol Biotechnol. 2012 Jul;95(1):135-46. doi: 10.1007/s00253-011-3732-2. Epub 2011 Dec 6.

PMID:
22143172

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