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Items: 1 to 50 of 115

1.

Erratum to: Sensitive Drug-Resistance Assays Reveal Long-Term Persistence of HIV-1 Variants with the K103N Nevirapine (NVP) Resistance Mutation in Some Women and Infants after the Administration of Single-Dose NVP: HIVNET 012.

Flys T, Nissley DV, Claasen CW, Jones D, Shi C, Guay LA, Musoke P, Mmiro F, Strathern JN, Jackson JB, Eshleman JR, Eshleman SH.

J Infect Dis. 2019 Nov 27. pii: jiz524. doi: 10.1093/infdis/jiz524. [Epub ahead of print] No abstract available.

PMID:
31776582
2.

A Cre Transcription Fidelity Reporter Identifies GreA as a Major RNA Proofreading Factor in Escherichia coli.

Bubunenko MG, Court CB, Rattray AJ, Gotte DR, Kireeva ML, Irizarry-Caro JA, Li X, Jin DJ, Court DL, Strathern JN, Kashlev M.

Genetics. 2017 May;206(1):179-187. doi: 10.1534/genetics.116.198960. Epub 2017 Mar 24.

3.

RNA polymerase II senses obstruction in the DNA minor groove via a conserved sensor motif.

Xu L, Wang W, Gotte D, Yang F, Hare AA, Welch TR, Li BC, Shin JH, Chong J, Strathern JN, Dervan PB, Wang D.

Proc Natl Acad Sci U S A. 2016 Nov 1;113(44):12426-12431. Epub 2016 Oct 17.

4.

Corrigendum: Transcription errors induce proteotoxic stress and shorten cellular lifespan.

Vermulst M, Denney AS, Lang MJ, Hung CW, Moore S, Moseley MA, Thompson JW, Madden V, Gauer J, Wolfe KJ, Summers DW, Schleit J, Sutphin GL, Haroon S, Holczbauer A, Caine J, Jorgenson J, Cyr D, Kaeberlein M, Strathern JN, Duncan MC, Erie DA.

Nat Commun. 2015 Oct 14;6:8738. doi: 10.1038/ncomms9738. No abstract available.

PMID:
26465398
5.

Transcription errors induce proteotoxic stress and shorten cellular lifespan.

Vermulst M, Denney AS, Lang MJ, Hung CW, Moore S, Moseley MA, Thompson JW, Madden V, Gauer J, Wolfe KJ, Summers DW, Schleit J, Sutphin GL, Haroon S, Holczbauer A, Caine J, Jorgenson J, Cyr D, Kaeberlein M, Strathern JN, Duncan MC, Erie DA.

Nat Commun. 2015 Aug 25;6:8065. doi: 10.1038/ncomms9065. Erratum in: Nat Commun. 2015;6:8738. Thompson, William J and Mosely, Arthur M [Corrected to Thompson, J Will and Moseley, M Arthur].

6.

Elevated mutation rate during meiosis in Saccharomyces cerevisiae.

Rattray A, Santoyo G, Shafer B, Strathern JN.

PLoS Genet. 2015 Jan 8;11(1):e1004910. doi: 10.1371/journal.pgen.1004910. eCollection 2015 Jan.

7.

A genetic assay for transcription errors reveals multilayer control of RNA polymerase II fidelity.

Irvin JD, Kireeva ML, Gotte DR, Shafer BK, Huang I, Kashlev M, Strathern JN.

PLoS Genet. 2014 Sep 18;10(9):e1004532. doi: 10.1371/journal.pgen.1004532. eCollection 2014 Sep.

8.

Intrinsic translocation barrier as an initial step in pausing by RNA polymerase II.

Imashimizu M, Kireeva ML, Lubkowska L, Gotte D, Parks AR, Strathern JN, Kashlev M.

J Mol Biol. 2013 Feb 22;425(4):697-712. doi: 10.1016/j.jmb.2012.12.002. Epub 2012 Dec 10.

PMID:
23238253
9.

Mechanism of translesion transcription by RNA polymerase II and its role in cellular resistance to DNA damage.

Walmacq C, Cheung AC, Kireeva ML, Lubkowska L, Ye C, Gotte D, Strathern JN, Carell T, Cramer P, Kashlev M.

Mol Cell. 2012 Apr 13;46(1):18-29. doi: 10.1016/j.molcel.2012.02.006. Epub 2012 Mar 8.

10.

Isolation and characterization of transcription fidelity mutants.

Strathern JN, Jin DJ, Court DL, Kashlev M.

Biochim Biophys Acta. 2012 Jul;1819(7):694-9. doi: 10.1016/j.bbagrm.2012.02.005. Epub 2012 Feb 16. Review.

PMID:
22366339
11.

Rpb9 subunit controls transcription fidelity by delaying NTP sequestration in RNA polymerase II.

Walmacq C, Kireeva ML, Irvin J, Nedialkov Y, Lubkowska L, Malagon F, Strathern JN, Kashlev M.

J Biol Chem. 2009 Jul 17;284(29):19601-12. doi: 10.1074/jbc.M109.006908. Epub 2009 May 13.

12.

Transient reversal of RNA polymerase II active site closing controls fidelity of transcription elongation.

Kireeva ML, Nedialkov YA, Cremona GH, Purtov YA, Lubkowska L, Malagon F, Burton ZF, Strathern JN, Kashlev M.

Mol Cell. 2008 Jun 6;30(5):557-66. doi: 10.1016/j.molcel.2008.04.017.

13.

Non-homologous end joining is important for repair of Cr(VI)-induced DNA damage in Saccharomyces cerevisiae.

Santoyo G, Strathern JN.

Microbiol Res. 2008;163(1):113-9. Epub 2007 Oct 17.

14.

Mutations in the Saccharomyces cerevisiae RPB1 gene conferring hypersensitivity to 6-azauracil.

Malagon F, Kireeva ML, Shafer BK, Lubkowska L, Kashlev M, Strathern JN.

Genetics. 2006 Apr;172(4):2201-9. Epub 2006 Mar 1.

15.

Measuring yeast cell density by spectrophotometry.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4186. doi: 10.1101/pdb.prot4186. No abstract available.

PMID:
22485587
16.

Determining plating efficiency in yeast: direct method.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4185. doi: 10.1101/pdb.prot4185. No abstract available.

PMID:
22485586
17.

Determining plating efficiency in yeast: indirect method.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4184. doi: 10.1101/pdb.prot4184. No abstract available.

PMID:
22485585
18.

Picking zygotes.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4183. doi: 10.1101/pdb.prot4183. No abstract available.

PMID:
22485584
19.

Making a tetrad dissection needle.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4182. doi: 10.1101/pdb.prot4182. No abstract available.

PMID:
22485583
20.

Tetrad dissection.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4181. doi: 10.1101/pdb.prot4181. No abstract available.

PMID:
22485582
21.

Ethyl Methane Sulfonate (EMS) Mutagenesis.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4180. doi: 10.1101/pdb.prot4180. No abstract available.

PMID:
22485581
22.

Logarithmic growth.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4179. doi: 10.1101/pdb.prot4179. No abstract available.

PMID:
22485580
23.

Preparation of yeast cells for flow cytometry.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4178. doi: 10.1101/pdb.prot4178. No abstract available.

PMID:
22485579
24.

Chromatin immunoprecipitation in yeast.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4177. doi: 10.1101/pdb.prot4177. No abstract available.

PMID:
22485578
25.

Inducing yeast cell synchrony: dilution of stationary-phase cultures.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4176. doi: 10.1101/pdb.prot4176. No abstract available.

PMID:
22485577
26.

Inducing yeast cell synchrony: nocodazole arrest.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4175. doi: 10.1101/pdb.prot4175. No abstract available.

PMID:
22485576
27.

Inducing yeast cell synchrony: hydroxyurea arrest.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4174. doi: 10.1101/pdb.prot4174. No abstract available.

PMID:
22485575
28.

Inducing Yeast Cell Synchrony: α-Factor Arrest Using bar1 Mutants.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4173. doi: 10.1101/pdb.prot4173. No abstract available.

PMID:
22485574
29.

Inducing Yeast Cell Synchrony: α-Factor Arrest Using Low pH.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4172. doi: 10.1101/pdb.prot4172. No abstract available.

PMID:
22485573
30.

Inducing Yeast Cell Synchrony: α-Factor Arrest Using Low Cell Concentration.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4171. doi: 10.1101/pdb.prot4171. No abstract available.

PMID:
22485572
31.

Yeast colony PCR.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4170. doi: 10.1101/pdb.prot4170. No abstract available.

PMID:
22485571
32.

PCR-Mediated Gene Disruption: One-Step Method.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4169. doi: 10.1101/pdb.prot4169. No abstract available.

PMID:
22485570
33.

Actin staining in fixed yeast cells.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4168. doi: 10.1101/pdb.prot4168. No abstract available.

PMID:
22485569
34.

Yeast immunofluorescence.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4167. doi: 10.1101/pdb.prot4167. No abstract available.

PMID:
22485568
35.

Yeast vital stains: calcofluor staining of chitin and bud scars.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4166. doi: 10.1101/pdb.prot4166. No abstract available.

PMID:
22485567
36.

Yeast Vital Stains: Visualizing Vacuoles and Endocytic Compartments with FM4-64.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4165. doi: 10.1101/pdb.prot4165. No abstract available.

PMID:
22485566
37.

Yeast Vital Stains: Visualizing Mitochondria with DiOC6 or DiIC5(3).

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4164. doi: 10.1101/pdb.prot4164. No abstract available.

PMID:
22485565
38.

Yeast Vital Stains: DAPI Stain of Nuclear and Mitochondrial DNA.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4163. doi: 10.1101/pdb.prot4163. No abstract available.

PMID:
22485564
39.

Random spore analysis in yeast.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4162. doi: 10.1101/pdb.prot4162. No abstract available.

PMID:
22485563
40.

Plate assay for carboxypeptidase y in yeast cells.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4161. doi: 10.1101/pdb.prot4161. No abstract available.

PMID:
22485562
41.

Assay of β-Galactosidase in Yeast: Freeze/Thaw Assay by Chemiluminescence in 96-Well Plates.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4160. doi: 10.1101/pdb.prot4160. No abstract available.

PMID:
22485561
42.

Assay of β-Galactosidase in Yeast: Freeze/Thaw Assay by Chemiluminescence in Microcentrifuge Tubes.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4159. doi: 10.1101/pdb.prot4159. No abstract available.

PMID:
22485560
43.

Assay of β-Galactosidase in Yeast: Permeabilized Cell Assay.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4158. doi: 10.1101/pdb.prot4158. No abstract available.

PMID:
22485559
44.

Assay of β-Galactosidase in Yeast: Assay of Crude Extracts.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4157. doi: 10.1101/pdb.prot4157. No abstract available.

PMID:
22485558
45.

Hydroxylamine mutagenesis of plasmid DNA.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4156. doi: 10.1101/pdb.prot4156. No abstract available.

PMID:
22485557
46.

Yeast RNA isolation: small-scale.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4155. doi: 10.1101/pdb.prot4155. No abstract available.

PMID:
22485556
47.

Yeast RNA isolation: large-scale.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4154. doi: 10.1101/pdb.prot4154. No abstract available.

PMID:
22485555
48.

Tandem Affinity Protein (TAP) Purification from Yeast.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4153. doi: 10.1101/pdb.prot4153. No abstract available.

PMID:
22485554
49.

Yeast protein extracts.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4152. doi: 10.1101/pdb.prot4152. No abstract available.

PMID:
22485553
50.

Preparation of genomic DNA from yeast using glass beads.

Amberg DC, Burke DJ, Strathern JN.

CSH Protoc. 2006 Jun 1;2006(1). pii: pdb.prot4151. doi: 10.1101/pdb.prot4151. No abstract available.

PMID:
22485552

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