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Correction to: Gene duplication and functional divergence of the zebrafish otospiralin genes.

Baanannou A, Rastegar S, Bouzid A, Takamiya M, Gerber V, Souissi A, Beil T, Jrad O, Strähle U, Masmoudi S.

Dev Genes Evol. 2020 Jan;230(1):37. doi: 10.1007/s00427-020-00647-8.


Light-controllable dithienylethene-modified cyclic peptides: photoswitching the in vivo toxicity in zebrafish embryos.

Afonin S, Babii O, Reuter A, Middel V, Takamiya M, Strähle U, Komarov IV, Ulrich AS.

Beilstein J Org Chem. 2020 Jan 7;16:39-49. doi: 10.3762/bjoc.16.6. eCollection 2020.


Differential Nanoparticle Sequestration by Macrophages and Scavenger Endothelial Cells Visualized in Vivo in Real-Time and at Ultrastructural Resolution.

Hayashi Y, Takamiya M, Jensen PB, Ojea-Jiménez I, Claude H, Antony C, Kjaer-Sorensen K, Grabher C, Boesen T, Gilliland D, Oxvig C, Strähle U, Weiss C.

ACS Nano. 2020 Jan 30. doi: 10.1021/acsnano.9b07233. [Epub ahead of print]


Toxicity of mercury: Molecular evidence.

Yang L, Zhang Y, Wang F, Luo Z, Guo S, Strähle U.

Chemosphere. 2020 Apr;245:125586. doi: 10.1016/j.chemosphere.2019.125586. Epub 2019 Dec 16. Review.


Gene duplication and functional divergence of the zebrafish otospiralin genes.

Baanannou A, Rastegar S, Bouzid A, Takamiya M, Gerber V, Souissi A, Beil T, Jrad O, Strähle U, Masmoudi S.

Dev Genes Evol. 2020 Jan;230(1):27-36. doi: 10.1007/s00427-019-00642-8. Epub 2019 Dec 14. Erratum in: Dev Genes Evol. 2020 Jan 27;:.


Supreme activity of gramicidin S against resistant, persistent and biofilm cells of staphylococci and enterococci.

Berditsch M, Afonin S, Reuster J, Lux H, Schkolin K, Babii O, Radchenko DS, Abdullah I, William N, Middel V, Strähle U, Nelson A, Valko K, Ulrich AS.

Sci Rep. 2019 Nov 29;9(1):17938. doi: 10.1038/s41598-019-54212-z.


Novel IQCE variations confirm its role in postaxial polydactyly and cause ciliary defect phenotype in zebrafish.

Estrada-Cuzcano A, Etard C, Delvallée C, Stoetzel C, Schaefer E, Scheidecker S, Geoffroy V, Schneider A, Studer F, Mattioli F, Chennen K, Sigaudy S, Plassard D, Poch O, Piton A, Strahle U, Muller J, Dollfus H.

Hum Mutat. 2020 Jan;41(1):240-254. doi: 10.1002/humu.23924. Epub 2019 Oct 17.


Functions of thioredoxin1 in brain development and in response to environmental chemicals in zebrafish embryos.

Yang L, Zeng C, Zhang Y, Wang F, Takamiya M, Strähle U.

Toxicol Lett. 2019 Oct 10;314:43-52. doi: 10.1016/j.toxlet.2019.07.009. Epub 2019 Jul 13.


Automated Classification of Fertilized Zebrafish Embryos.

Neukum A, Bartschat A, Breitwieser H, Strähle U, Dickmeis T, Pylatiuk C.

Zebrafish. 2019 Jun;16(3):326-328. doi: 10.1089/zeb.2019.1728. Epub 2019 Apr 2. No abstract available.


Straightforward access to biocompatible poly(2-oxazoline)-coated nanomaterials by polymerization-induced self-assembly.

Le D, Wagner F, Takamiya M, Hsiao IL, Gil Alvaradejo G, Strähle U, Weiss C, Delaittre G.

Chem Commun (Camb). 2019 Mar 26;55(26):3741-3744. doi: 10.1039/c9cc00407f.


Expression of adiponectin receptors in the brain of adult zebrafish and mouse: Links with neurogenic niches and brain repair.

Rastegar S, Parimisetty A, Cassam Sulliman N, Narra SS, Weber S, Rastegar M, Viranaicken W, Couret D, Planesse C, Strähle U, Meilhac O, Lefebvre d'Hellencourt C, Diotel N.

J Comp Neurol. 2019 Oct 1;527(14):2317-2333. doi: 10.1002/cne.24669. Epub 2019 Mar 29.


The HMG box transcription factors Sox1a and Sox1b specify a new class of glycinergic interneuron in the spinal cord of zebrafish embryos.

Gerber V, Yang L, Takamiya M, Ribes V, Gourain V, Peravali R, Stegmaier J, Mikut R, Reischl M, Ferg M, Rastegar S, Strähle U.

Development. 2019 Feb 20;146(4). pii: dev172510. doi: 10.1242/dev.172510.


Mutation of a serine near the catalytic site of the choline acetyltransferase a gene almost completely abolishes motility of the zebrafish embryo.

Joshi S, Virdi S, Etard C, Geisler R, Strähle U.

PLoS One. 2018 Nov 20;13(11):e0207747. doi: 10.1371/journal.pone.0207747. eCollection 2018.


Oriented immobilization of a delicate glucose-sensing protein on silica nanoparticles.

Leidner A, Bauer J, Ebrahimi Khonachah M, Takamiya M, Strähle U, Dickmeis T, Rabe KS, Niemeyer CM.

Biomaterials. 2019 Jan;190-191:76-85. doi: 10.1016/j.biomaterials.2018.10.035. Epub 2018 Oct 31.


An automated screening method for detecting compounds with goitrogenic activity using transgenic zebrafish embryos.

Jarque S, Fetter E, Veneman WJ, Spaink HP, Peravali R, Strähle U, Scholz S.

PLoS One. 2018 Aug 29;13(8):e0203087. doi: 10.1371/journal.pone.0203087. eCollection 2018.


Distinct amino acid motifs carrying multiple positive charges regulate membrane targeting of dysferlin and MG53.

Zhou L, Middel V, Reischl M, Strähle U, Nienhaus GU.

PLoS One. 2018 Aug 9;13(8):e0202052. doi: 10.1371/journal.pone.0202052. eCollection 2018.


EmbryoMiner: A new framework for interactive knowledge discovery in large-scale cell tracking data of developing embryos.

Schott B, Traub M, Schlagenhauf C, Takamiya M, Antritter T, Bartschat A, Löffler K, Blessing D, Otte JC, Kobitski AY, Nienhaus GU, Strähle U, Mikut R, Stegmaier J.

PLoS Comput Biol. 2018 Apr 19;14(4):e1006128. doi: 10.1371/journal.pcbi.1006128. eCollection 2018 Apr.


Zebrafish: A Pharmacogenetic Model for Anesthesia.

Bedell V, Buglo E, Marcato D, Pylatiuk C, Mikut R, Stegmaier J, Scudder W, Wray M, Züchner S, Strähle U, Peravali R, Dallman JE.

Methods Enzymol. 2018;602:189-209. doi: 10.1016/bs.mie.2018.02.004. Epub 2018 Mar 15.


Expression and activity profiling of the steroidogenic enzymes of glucocorticoid biosynthesis and the fdx1 co-factors in zebrafish.

Weger M, Diotel N, Weger BD, Beil T, Zaucker A, Eachus HL, Oakes JA, do Rego JL, Storbeck KH, Gut P, Strähle U, Rastegar S, Müller F, Krone N.

J Neuroendocrinol. 2018 Apr;30(4):e12586. doi: 10.1111/jne.12586.


Loss of zebrafish Smyd1a interferes with myofibrillar integrity without triggering the misfolded myosin response.

Paone C, Rudeck S, Etard C, Strähle U, Rottbauer W, Just S.

Biochem Biophys Res Commun. 2018 Feb 5;496(2):339-345. doi: 10.1016/j.bbrc.2018.01.060. Epub 2018 Jan 10.


Microtome-integrated microscope system for high sensitivity tracking of in-resin fluorescence in blocks and ultrathin sections for correlative microscopy.

Lemercier N, Middel V, Hentsch D, Taubert S, Takamiya M, Beil T, Vonesch JL, Baumbach T, Schultz P, Antony C, Strähle U.

Sci Rep. 2017 Oct 19;7(1):13583. doi: 10.1038/s41598-017-13348-6.


Report of Workshop on Euthanasia for Zebrafish-A Matter of Welfare and Science.

Köhler A, Collymore C, Finger-Baier K, Geisler R, Kaufmann L, Pounder KC, Schulte-Merker S, Valentim A, Varga ZM, Weiss J, Strähle U.

Zebrafish. 2017 Dec;14(6):547-551. doi: 10.1089/zeb.2017.1508. Epub 2017 Oct 2.


Development of Bag-1L as a therapeutic target in androgen receptor-dependent prostate cancer.

Cato L, Neeb A, Sharp A, Buzón V, Ficarro SB, Yang L, Muhle-Goll C, Kuznik NC, Riisnaes R, Nava Rodrigues D, Armant O, Gourain V, Adelmant G, Ntim EA, Westerling T, Dolling D, Rescigno P, Figueiredo I, Fauser F, Wu J, Rottenberg JT, Shatkina L, Ester C, Luy B, Puchta H, Troppmair J, Jung N, Bräse S, Strähle U, Marto JA, Nienhaus GU, Al-Lazikani B, Salvatella X, de Bono JS, Cato AC, Brown M.

Elife. 2017 Aug 10;6. pii: e27159. doi: 10.7554/eLife.27159.


Tracking of Indels by DEcomposition is a Simple and Effective Method to Assess Efficiency of Guide RNAs in Zebrafish.

Etard C, Joshi S, Stegmaier J, Mikut R, Strähle U.

Zebrafish. 2017 Dec;14(6):586-588. doi: 10.1089/zeb.2017.1454. Epub 2017 Aug 2.


Fishing for contaminants: identification of three mechanism specific transcriptome signatures using Danio rerio embryos.

Hausen J, Otte JC, Legradi J, Yang L, Strähle U, Fenske M, Hecker M, Tang S, Hammers-Wirtz M, Hollert H, Keiter SH, Ottermanns R.

Environ Sci Pollut Res Int. 2018 Feb;25(5):4023-4036. doi: 10.1007/s11356-017-8977-6. Epub 2017 Apr 8.


Protein-Functionalized DNA Nanostructures as Tools to Control Transcription in Zebrafish Embryos.

Angelin A, Kassel O, Rastegar S, Strähle U, Niemeyer CM.

ChemistryOpen. 2016 Dec 28;6(1):33-39. doi: 10.1002/open.201600153. eCollection 2017 Feb.


Neuronal sFlt1 and Vegfaa determine venous sprouting and spinal cord vascularization.

Wild R, Klems A, Takamiya M, Hayashi Y, Strähle U, Ando K, Mochizuki N, van Impel A, Schulte-Merker S, Krueger J, Preau L, le Noble F.

Nat Commun. 2017 Jan 10;8:13991. doi: 10.1038/ncomms13991.


Archiving of zebrafish lines can reduce animal experiments in biomedical research.

Geisler R, Köhler A, Dickmeis T, Strähle U.

EMBO Rep. 2017 Jan;18(1):1-2. doi: 10.15252/embr.201643561. Epub 2016 Dec 15. No abstract available.


A mutation in VPS15 (PIK3R4) causes a ciliopathy and affects IFT20 release from the cis-Golgi.

Stoetzel C, Bär S, De Craene JO, Scheidecker S, Etard C, Chicher J, Reck JR, Perrault I, Geoffroy V, Chennen K, Strähle U, Hammann P, Friant S, Dollfus H.

Nat Commun. 2016 Nov 24;7:13586. doi: 10.1038/ncomms13586.


Euthanizing zebrafish legally in Europe: Are the approved methods of euthanizing zebrafish appropriate to research reality and animal welfare?

Valentim AM, van Eeden FJ, Strähle U, Olsson IA.

EMBO Rep. 2016 Dec;17(12):1688-1689. Epub 2016 Oct 18. No abstract available.


Dysferlin-mediated phosphatidylserine sorting engages macrophages in sarcolemma repair.

Middel V, Zhou L, Takamiya M, Beil T, Shahid M, Roostalu U, Grabher C, Rastegar S, Reischl M, Nienhaus GU, Strähle U.

Nat Commun. 2016 Sep 19;7:12875. doi: 10.1038/ncomms12875.


The Tetraodon nigroviridis reference transcriptome: developmental transition, length retention and microsynteny of long non-coding RNAs in a compact vertebrate genome.

Basu S, Hadzhiev Y, Petrosino G, Nepal C, Gehrig J, Armant O, Ferg M, Strahle U, Sanges R, Müller F.

Sci Rep. 2016 Sep 15;6:33210. doi: 10.1038/srep33210.


Report of the 4th European Zebrafish Principal Investigator Meeting.

Lopes SS, Distel M, Linker C, Fior R, Monteiro R, Bianco IH, Portugues R, Strähle U, Saúde L.

Zebrafish. 2016 Dec;13(6):590-595. Epub 2016 Sep 14.


Lmx1b is required for the glutamatergic fates of a subset of spinal cord neurons.

Hilinski WC, Bostrom JR, England SJ, Juárez-Morales JL, de Jager S, Armant O, Legradi J, Strähle U, Link BA, Lewis KE.

Neural Dev. 2016 Aug 23;11(1):16. doi: 10.1186/s13064-016-0070-1.


The Zebrafish as Model for Deciphering the Regulatory Architecture of Vertebrate Genomes.

Rastegar S, Strähle U.

Adv Genet. 2016;95:195-216. doi: 10.1016/bs.adgen.2016.04.003. Epub 2016 Jun 13. Review.


Maintenance of Zebrafish Lines at the European Zebrafish Resource Center.

Geisler R, Borel N, Ferg M, Maier JV, Strähle U.

Zebrafish. 2016 Jul;13 Suppl 1:S19-23. doi: 10.1089/zeb.2015.1205.


A compact unc45b-promoter drives muscle-specific expression in zebrafish and mouse.

Rudeck S, Etard C, Khan MM, Rottbauer W, Rudolf R, Strähle U, Just S.

Genesis. 2016 Aug;54(8):431-8. doi: 10.1002/dvg.22953. Epub 2016 Jul 9.


Whole transcriptome data analysis of zebrafish mutants affecting muscle development.

Armant O, Gourain V, Etard C, Strähle U.

Data Brief. 2016 May 12;8:61-8. doi: 10.1016/j.dib.2016.05.007. eCollection 2016 Sep.


Melanosomes in pigmented epithelia maintain eye lens transparency during zebrafish embryonic development.

Takamiya M, Xu F, Suhonen H, Gourain V, Yang L, Ho NY, Helfen L, Schröck A, Etard C, Grabher C, Rastegar S, Schlunck G, Reinhard T, Baumbach T, Strähle U.

Sci Rep. 2016 May 4;6:25046. doi: 10.1038/srep25046.


The in vitro PIG-A gene mutation assay: glycosylphosphatidylinositol (GPI)-related genotype-to-phenotype relationship in TK6 cells.

Krüger CT, Fischer BM, Armant O, Morath V, Strähle U, Hartwig A.

Arch Toxicol. 2016 Jul;90(7):1729-36. doi: 10.1007/s00204-016-1707-x. Epub 2016 Apr 21.


Zebrafish biosensor for toxicant induced muscle hyperactivity.

Shahid M, Takamiya M, Stegmaier J, Middel V, Gradl M, Klüver N, Mikut R, Dickmeis T, Scholz S, Rastegar S, Yang L, Strähle U.

Sci Rep. 2016 Mar 31;6:23768. doi: 10.1038/srep23768.


HeRBi: Helmholtz Repository of Bioparts.

Strähle U, Ferg M, Armant O, Gradl M, Kaufmann L, Rastegar S.

Zebrafish. 2016 Jun;13(3):234-5. doi: 10.1089/zeb.2016.29003.str. Epub 2016 Feb 10. No abstract available.


An automated and high-throughput Photomotor Response platform for chemical screens.

Marcato D, Alshut R, Breitwieser H, Mikut R, Strahle U, Pylatiuk C, Peravali R.

Conf Proc IEEE Eng Med Biol Soc. 2015;2015:7728-31. doi: 10.1109/EMBC.2015.7320183.


Loss of function of myosin chaperones triggers Hsf1-mediated transcriptional response in skeletal muscle cells.

Etard C, Armant O, Roostalu U, Gourain V, Ferg M, Strähle U.

Genome Biol. 2015 Dec 3;16:267. doi: 10.1186/s13059-015-0825-8.


Fold-change threshold screening: a robust algorithm to unmask hidden gene expression patterns in noisy aggregated transcriptome data.

Hausen J, Otte JC, Strähle U, Hammers-Wirtz M, Hollert H, Keiter SH, Ottermanns R.

Environ Sci Pollut Res Int. 2015 Nov;22(21):16384-92. doi: 10.1007/s11356-015-5019-0. Epub 2015 Jul 17.


Differential expression of id genes and their potential regulator znf238 in zebrafish adult neural progenitor cells and neurons suggests distinct functions in adult neurogenesis.

Diotel N, Beil T, Strähle U, Rastegar S.

Gene Expr Patterns. 2015 Sep-Nov;19(1-2):1-13. doi: 10.1016/j.gep.2015.05.004. Epub 2015 Jun 21.


Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome.

Naville M, Ishibashi M, Ferg M, Bengani H, Rinkwitz S, Krecsmarik M, Hawkins TA, Wilson SW, Manning E, Chilamakuri CS, Wilson DI, Louis A, Lucy Raymond F, Rastegar S, Strähle U, Lenhard B, Bally-Cuif L, van Heyningen V, FitzPatrick DR, Becker TS, Roest Crollius H.

Nat Commun. 2015 Apr 24;6:6904. doi: 10.1038/ncomms7904.


Mutations in TUBGCP4 alter microtubule organization via the γ-tubulin ring complex in autosomal-recessive microcephaly with chorioretinopathy.

Scheidecker S, Etard C, Haren L, Stoetzel C, Hull S, Arno G, Plagnol V, Drunat S, Passemard S, Toutain A, Obringer C, Koob M, Geoffroy V, Marion V, Strähle U, Ostergaard P, Verloes A, Merdes A, Moore AT, Dollfus H.

Am J Hum Genet. 2015 Apr 2;96(4):666-74. doi: 10.1016/j.ajhg.2015.02.011. Epub 2015 Mar 26.


Red Light-Regulated Reversible Nuclear Localization of Proteins in Mammalian Cells and Zebrafish.

Beyer HM, Juillot S, Herbst K, Samodelov SL, Müller K, Schamel WW, Römer W, Schäfer E, Nagy F, Strähle U, Weber W, Zurbriggen MD.

ACS Synth Biol. 2015 Sep 18;4(9):951-8. doi: 10.1021/acssynbio.5b00004. Epub 2015 Mar 30.


An ensemble-averaged, cell density-based digital model of zebrafish embryo development derived from light-sheet microscopy data with single-cell resolution.

Kobitski AY, Otte JC, Takamiya M, Schäfer B, Mertes J, Stegmaier J, Rastegar S, Rindone F, Hartmann V, Stotzka R, García A, van Wezel J, Mikut R, Strähle U, Nienhaus GU.

Sci Rep. 2015 Feb 25;5:8601. doi: 10.1038/srep08601.

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