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Items: 49

1.

Hydrogen Oxidation Influences Glycogen Accumulation in a Verrucomicrobial Methanotroph.

Carere CR, McDonald B, Peach HA, Greening C, Gapes DJ, Collet C, Stott MB.

Front Microbiol. 2019 Aug 16;10:1873. doi: 10.3389/fmicb.2019.01873. eCollection 2019.

2.

Thermophilic methanotrophs: in hot pursuit.

Houghton KM, Carere CR, Stott MB, McDonald IR.

FEMS Microbiol Ecol. 2019 Sep 1;95(9). pii: fiz125. doi: 10.1093/femsec/fiz125.

PMID:
31374570
3.

Two Chloroflexi classes independently evolved the ability to persist on atmospheric hydrogen and carbon monoxide.

Islam ZF, Cordero PRF, Feng J, Chen YJ, Bay SK, Jirapanjawat T, Gleadow RM, Carere CR, Stott MB, Chiri E, Greening C.

ISME J. 2019 Jul;13(7):1801-1813. doi: 10.1038/s41396-019-0393-0. Epub 2019 Mar 14.

4.

Identifying accurate metagenome and amplicon software via a meta-analysis of sequence to taxonomy benchmarking studies.

Gardner PP, Watson RJ, Morgan XC, Draper JL, Finn RD, Morales SE, Stott MB.

PeerJ. 2019 Jan 4;7:e6160. doi: 10.7717/peerj.6160. eCollection 2019.

5.

Genome mining, isolation, chemical synthesis and biological evaluation of a novel lanthipeptide, tikitericin, from the extremophilic microorganism Thermogemmatispora strain T81.

Xu B, Aitken EJ, Baker BP, Turner CA, Harvey JE, Stott MB, Power JF, Harris PWR, Keyzers RA, Brimble MA.

Chem Sci. 2018 Aug 20;9(37):7311-7317. doi: 10.1039/c8sc02170h. eCollection 2018 Oct 7.

6.

A new symbiotic nanoarchaeote (Candidatus Nanoclepta minutus) and its host (Zestosphaera tikiterensis gen. nov., sp. nov.) from a New Zealand hot spring.

St John E, Liu Y, Podar M, Stott MB, Meneghin J, Chen Z, Lagutin K, Mitchell K, Reysenbach AL.

Syst Appl Microbiol. 2019 Jan;42(1):94-106. doi: 10.1016/j.syapm.2018.08.005. Epub 2018 Aug 16.

PMID:
30195930
7.

A metabolic and genomic assessment of sugar fermentation profiles of the thermophilic Thermotogales, Fervidobacterium pennivorans.

Wushke S, Fristensky B, Zhang XL, Spicer V, Krokhin OV, Levin DB, Stott MB, Sparling R.

Extremophiles. 2018 Nov;22(6):965-974. doi: 10.1007/s00792-018-1053-4. Epub 2018 Sep 4.

PMID:
30182148
8.

Interaction between ferruginous clay sediment and an iron-reducing hyperthermophilic Pyrobaculum sp. in a terrestrial hot spring.

Stewart LC, Houghton K, Carere CR, Power JF, Chambefort I, Stott MB.

FEMS Microbiol Ecol. 2018 Nov 1;94(11). doi: 10.1093/femsec/fiy160.

PMID:
30124835
9.

Microbial biogeography of 925 geothermal springs in New Zealand.

Power JF, Carere CR, Lee CK, Wakerley GLJ, Evans DW, Button M, White D, Climo MD, Hinze AM, Morgan XC, McDonald IR, Cary SC, Stott MB.

Nat Commun. 2018 Jul 23;9(1):2876. doi: 10.1038/s41467-018-05020-y.

10.

Marine-influenced microbial communities inhabit terrestrial hot springs on a remote island volcano.

Stewart LC, Stucker VK, Stott MB, de Ronde CEJ.

Extremophiles. 2018 Jul;22(4):687-698. doi: 10.1007/s00792-018-1029-4. Epub 2018 Apr 30.

PMID:
29713821
11.

The ecology and diversity of microbial eukaryotes in geothermal springs.

Oliverio AM, Power JF, Washburne A, Cary SC, Stott MB, Fierer N.

ISME J. 2018 Aug;12(8):1918-1928. doi: 10.1038/s41396-018-0104-2. Epub 2018 Apr 16.

12.

Draft Genome Sequence of a Dictyoglomus sp. from an Enrichment Culture of a New Zealand Geothermal Spring.

Reysenbach AL, Donaho JA, Kelley JF, St John E, Turner C, Podar M, Stott MB.

Genome Announc. 2018 Mar 15;6(11). pii: e00150-18. doi: 10.1128/genomeA.00150-18.

13.

Draft Genome Sequence of a Novel Thermofilum sp. Strain from a New Zealand Hot Spring Enrichment Culture.

Reysenbach AL, Donaho JA, Hinsch TM, Kelley JF, Kouba K, Podar M, Stott MB.

Genome Announc. 2018 Feb 22;6(8). pii: e00005-18. doi: 10.1128/genomeA.00005-18.

14.

Atmospheric trace gases support primary production in Antarctic desert surface soil.

Ji M, Greening C, Vanwonterghem I, Carere CR, Bay SK, Steen JA, Montgomery K, Lines T, Beardall J, van Dorst J, Snape I, Stott MB, Hugenholtz P, Ferrari BC.

Nature. 2017 Dec 21;552(7685):400-403. doi: 10.1038/nature25014. Epub 2017 Dec 6.

PMID:
29211716
15.

Cofactor Tail Length Modulates Catalysis of Bacterial F420-Dependent Oxidoreductases.

Ney B, Carere CR, Sparling R, Jirapanjawat T, Stott MB, Jackson CJ, Oakeshott JG, Warden AC, Greening C.

Front Microbiol. 2017 Sep 27;8:1902. doi: 10.3389/fmicb.2017.01902. eCollection 2017.

16.

Mixotrophy drives niche expansion of verrucomicrobial methanotrophs.

Carere CR, Hards K, Houghton KM, Power JF, McDonald B, Collet C, Gapes DJ, Sparling R, Boyd ES, Cook GM, Greening C, Stott MB.

ISME J. 2017 Nov;11(11):2599-2610. doi: 10.1038/ismej.2017.112. Epub 2017 Aug 4.

17.

Asgard archaea illuminate the origin of eukaryotic cellular complexity.

Zaremba-Niedzwiedzka K, Caceres EF, Saw JH, Bäckström D, Juzokaite L, Vancaester E, Seitz KW, Anantharaman K, Starnawski P, Kjeldsen KU, Stott MB, Nunoura T, Banfield JF, Schramm A, Baker BJ, Spang A, Ettema TJ.

Nature. 2017 Jan 19;541(7637):353-358. doi: 10.1038/nature21031. Epub 2017 Jan 11.

18.

Microbial community dynamics in Inferno Crater Lake, a thermally fluctuating geothermal spring.

Ward L, Taylor MW, Power JF, Scott BJ, McDonald IR, Stott MB.

ISME J. 2017 May;11(5):1158-1167. doi: 10.1038/ismej.2016.193. Epub 2017 Jan 10.

19.

The methanogenic redox cofactor F420 is widely synthesized by aerobic soil bacteria.

Ney B, Ahmed FH, Carere CR, Biswas A, Warden AC, Morales SE, Pandey G, Watt SJ, Oakeshott JG, Taylor MC, Stott MB, Jackson CJ, Greening C.

ISME J. 2017 Jan;11(1):125-137. doi: 10.1038/ismej.2016.100. Epub 2016 Aug 9.

20.

The Chthonomonas calidirosea Genome Is Highly Conserved across Geographic Locations and Distinct Chemical and Microbial Environments in New Zealand's Taupō Volcanic Zone.

Lee KC, Stott MB, Dunfield PF, Huttenhower C, McDonald IR, Morgan XC.

Appl Environ Microbiol. 2016 May 31;82(12):3572-81. doi: 10.1128/AEM.00139-16. Print 2016 Jun 15.

21.

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22(T).

Lee KC, Morgan XC, Power JF, Dunfield PF, Huttenhower C, Stott MB.

Stand Genomic Sci. 2015 Nov 14;10:101. doi: 10.1186/s40793-015-0099-5. eCollection 2015.

22.

Genomic and metagenomic surveys of hydrogenase distribution indicate H2 is a widely utilised energy source for microbial growth and survival.

Greening C, Biswas A, Carere CR, Jackson CJ, Taylor MC, Stott MB, Cook GM, Morales SE.

ISME J. 2016 Mar;10(3):761-77. doi: 10.1038/ismej.2015.153. Epub 2015 Sep 25.

23.

Thermorudis pharmacophila sp. nov., a novel member of the class Thermomicrobia isolated from geothermal soil, and emended descriptions of Thermomicrobium roseum, Thermomicrobium carboxidum, Thermorudis peleae and Sphaerobacter thermophilus.

Houghton KM, Morgan XC, Lagutin K, MacKenzie AD, Vyssotskii M, Mitchell KA, McDonald IR, Morgan HW, Power JF, Moreau JW, Hanssen E, Stott MB.

Int J Syst Evol Microbiol. 2015 Dec;65(12):4479-87. doi: 10.1099/ijsem.0.000598. Epub 2015 Sep 14.

PMID:
26374291
24.

Persistence of the dominant soil phylum Acidobacteria by trace gas scavenging.

Greening C, Carere CR, Rushton-Green R, Harold LK, Hards K, Taylor MC, Morales SE, Stott MB, Cook GM.

Proc Natl Acad Sci U S A. 2015 Aug 18;112(33):10497-502. doi: 10.1073/pnas.1508385112. Epub 2015 Aug 3.

25.

Limisphaera ngatamarikiensis gen. nov., sp. nov., a thermophilic, pink-pigmented coccus isolated from subaqueous mud of a geothermal hotspring.

Anders H, Power JF, MacKenzie AD, Lagutin K, Vyssotski M, Hanssen E, Moreau JW, Stott MB.

Int J Syst Evol Microbiol. 2015 Apr;65(Pt 4):1114-1121. doi: 10.1099/ijs.0.000063. Epub 2015 Jan 9.

PMID:
25575826
26.

Temperature and pH control on lipid composition of silica sinters from diverse hot springs in the Taupo Volcanic Zone, New Zealand.

Kaur G, Mountain BW, Stott MB, Hopmans EC, Pancost RD.

Extremophiles. 2015 Mar;19(2):327-44. doi: 10.1007/s00792-014-0719-9. Epub 2014 Dec 17.

27.

Novel long-chain diol phospholipids from some bacteria belonging to the class Thermomicrobia.

Lagutin K, MacKenzie A, Houghton KM, Stott MB, Vyssotski M.

Lipids. 2015 Mar;50(3):303-11. doi: 10.1007/s11745-014-3979-3. Epub 2014 Dec 16.

PMID:
25512000
28.

Microbial contributions to coupled arsenic and sulfur cycling in the acid-sulfide hot spring Champagne Pool, New Zealand.

Hug K, Maher WA, Stott MB, Krikowa F, Foster S, Moreau JW.

Front Microbiol. 2014 Nov 4;5:569. doi: 10.3389/fmicb.2014.00569. eCollection 2014.

29.

The identification and quantification of phospholipids from Thermus and Meiothermus bacteria.

Lagutin K, MacKenzie A, Houghton KM, Stott MB, Vyssotski M.

Lipids. 2014 Nov;49(11):1133-41. doi: 10.1007/s11745-014-3946-z. Epub 2014 Sep 10.

PMID:
25204578
30.

Ether- and ester-bound iso-diabolic acid and other lipids in members of acidobacteria subdivision 4.

Sinninghe Damsté JS, Rijpstra WI, Hopmans EC, Foesel BU, Wüst PK, Overmann J, Tank M, Bryant DA, Dunfield PF, Houghton K, Stott MB.

Appl Environ Microbiol. 2014 Sep;80(17):5207-18. doi: 10.1128/AEM.01066-14. Epub 2014 Jun 13.

31.

Distribution and diversity of Verrucomicrobia methanotrophs in geothermal and acidic environments.

Sharp CE, Smirnova AV, Graham JM, Stott MB, Khadka R, Moore TR, Grasby SE, Strack M, Dunfield PF.

Environ Microbiol. 2014 Jun;16(6):1867-78. doi: 10.1111/1462-2920.12454. Epub 2014 Apr 18.

PMID:
24650084
32.

Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes.

Lee KC, Morgan XC, Dunfield PF, Tamas I, McDonald IR, Stott MB.

ISME J. 2014 Jul;8(7):1522-33. doi: 10.1038/ismej.2013.251. Epub 2014 Jan 30.

33.

Humboldt's spa: microbial diversity is controlled by temperature in geothermal environments.

Sharp CE, Brady AL, Sharp GH, Grasby SE, Stott MB, Dunfield PF.

ISME J. 2014 Jun;8(6):1166-74. doi: 10.1038/ismej.2013.237. Epub 2014 Jan 16.

34.

Thermoflavifilum aggregans gen. nov., sp. nov., a thermophilic and slightly halophilic filamentous bacterium from the phylum Bacteroidetes.

Anders H, Dunfield PF, Lagutin K, Houghton KM, Power JF, Mackenzie AD, Vyssotski M, Ryan JL, Hanssen EG, Moreau JW, Stott MB.

Int J Syst Evol Microbiol. 2014 Apr;64(Pt 4):1264-70. doi: 10.1099/ijs.0.057463-0. Epub 2014 Jan 14.

PMID:
24425740
35.

Pyrinomonas methylaliphatogenes gen. nov., sp. nov., a novel group 4 thermophilic member of the phylum Acidobacteria from geothermal soils.

Crowe MA, Power JF, Morgan XC, Dunfield PF, Lagutin K, Rijpstra IC, Vyssotski GN, Sinninghe Damste JS, Houghton KM, Ryan JL, Stott MB.

Int J Syst Evol Microbiol. 2014 Jan;64(Pt 1):220-7. doi: 10.1099/ijs.0.055079-0. Epub 2013 Sep 18. Erratum in: Int J Syst Evol Microbiol. 2014 Mar;64(Pt 3):1074. Rijpstra, W I C [removed]; Vyssotski, G N S [added].

PMID:
24048862
36.

Phylogenetic delineation of the novel phylum Armatimonadetes (former candidate division OP10) and definition of two novel candidate divisions.

Lee KC, Herbold CW, Dunfield PF, Morgan XC, McDonald IR, Stott MB.

Appl Environ Microbiol. 2013 Apr;79(7):2484-7. doi: 10.1128/AEM.03333-12. Epub 2013 Feb 1.

37.

Detection of autotrophic verrucomicrobial methanotrophs in a geothermal environment using stable isotope probing.

Sharp CE, Stott MB, Dunfield PF.

Front Microbiol. 2012 Aug 17;3:303. doi: 10.3389/fmicb.2012.00303. eCollection 2012.

38.

Electing a candidate: a speculative history of the bacterial phylum OP10.

Dunfield PF, Tamas I, Lee KC, Morgan XC, McDonald IR, Stott MB.

Environ Microbiol. 2012 Dec;14(12):3069-80. doi: 10.1111/j.1462-2920.2012.02742.x. Epub 2012 Apr 13.

PMID:
22497633
39.

Hell's Gate globin I: an acid and thermostable bacterial hemoglobin resembling mammalian neuroglobin.

Teh AH, Saito JA, Baharuddin A, Tuckerman JR, Newhouse JS, Kanbe M, Newhouse EI, Rahim RA, Favier F, Didierjean C, Sousa EH, Stott MB, Dunfield PF, Gonzalez G, Gilles-Gonzalez MA, Najimudin N, Alam M.

FEBS Lett. 2011 Oct 20;585(20):3250-8. doi: 10.1016/j.febslet.2011.09.002. Epub 2011 Sep 9.

40.

Fatty Acids of Chthonomonas calidirosea, of a novel class Chthonomonadetes from a recently described phylum Armatimonadetes.

Vyssotski M, Lee KC, Lagutin K, Ryan J, Morgan XC, Stott MB.

Lipids. 2011 Dec;46(12):1155-61. doi: 10.1007/s11745-011-3597-2. Epub 2011 Jul 31.

PMID:
21805326
41.

Chthonomonas calidirosea gen. nov., sp. nov., an aerobic, pigmented, thermophilic micro-organism of a novel bacterial class, Chthonomonadetes classis nov., of the newly described phylum Armatimonadetes originally designated candidate division OP10.

Lee KC, Dunfield PF, Morgan XC, Crowe MA, Houghton KM, Vyssotski M, Ryan JL, Lagutin K, McDonald IR, Stott MB.

Int J Syst Evol Microbiol. 2011 Oct;61(Pt 10):2482-90. doi: 10.1099/ijs.0.027235-0. Epub 2010 Nov 19.

PMID:
21097641
42.

Complete genome sequence of Beijerinckia indica subsp. indica.

Tamas I, Dedysh SN, Liesack W, Stott MB, Alam M, Murrell JC, Dunfield PF.

J Bacteriol. 2010 Sep;192(17):4532-3. doi: 10.1128/JB.00656-10. Epub 2010 Jul 2.

43.

Complete genome sequence of the aerobic facultative methanotroph Methylocella silvestris BL2.

Chen Y, Crombie A, Rahman MT, Dedysh SN, Liesack W, Stott MB, Alam M, Theisen AR, Murrell JC, Dunfield PF.

J Bacteriol. 2010 Jul;192(14):3840-1. doi: 10.1128/JB.00506-10. Epub 2010 May 14.

44.

Environmental, genomic and taxonomic perspectives on methanotrophic Verrucomicrobia.

Op den Camp HJ, Islam T, Stott MB, Harhangi HR, Hynes A, Schouten S, Jetten MS, Birkeland NK, Pol A, Dunfield PF.

Environ Microbiol Rep. 2009 Oct;1(5):293-306. doi: 10.1111/j.1758-2229.2009.00022.x. Epub 2009 Mar 3.

PMID:
23765882
45.

Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1.

Saw JH, Mountain BW, Feng L, Omelchenko MV, Hou S, Saito JA, Stott MB, Li D, Zhao G, Wu J, Galperin MY, Koonin EV, Makarova KS, Wolf YI, Rigden DJ, Dunfield PF, Wang L, Alam M.

Genome Biol. 2008;9(11):R161. doi: 10.1186/gb-2008-9-11-r161. Epub 2008 Nov 17.

46.

Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia.

Hou S, Makarova KS, Saw JH, Senin P, Ly BV, Zhou Z, Ren Y, Wang J, Galperin MY, Omelchenko MV, Wolf YI, Yutin N, Koonin EV, Stott MB, Mountain BW, Crowe MA, Smirnova AV, Dunfield PF, Feng L, Wang L, Alam M.

Biol Direct. 2008 Jul 1;3:26. doi: 10.1186/1745-6150-3-26.

47.

Isolation of novel bacteria, including a candidate division, from geothermal soils in New Zealand.

Stott MB, Crowe MA, Mountain BW, Smirnova AV, Hou S, Alam M, Dunfield PF.

Environ Microbiol. 2008 Aug;10(8):2030-41. doi: 10.1111/j.1462-2920.2008.01621.x. Epub 2008 Apr 15.

PMID:
18422642
48.

Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia.

Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Feng L, Wang L, Alam M.

Nature. 2007 Dec 6;450(7171):879-82. Epub 2007 Nov 14.

PMID:
18004300
49.

The effectiveness of vocational guidance.

HANDYSIDE J, STOTT MB.

Med World. 1958 Oct;89(4):369-74. No abstract available.

PMID:
13589405

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