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Items: 1 to 50 of 74

1.

Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development.

Painter HJ, Chung NC, Sebastian A, Albert I, Storey JD, Llinás M.

Nat Commun. 2018 Jul 9;9(1):2656. doi: 10.1038/s41467-018-04966-3.

2.

Associations between ideational variables and bed net use in Madagascar, Mali, and Nigeria.

Storey JD, Babalola SO, Ricotta EE, Fox KA, Toso M, Lewicky N, Koenker H.

BMC Public Health. 2018 Apr 11;18(1):484. doi: 10.1186/s12889-018-5372-2.

3.

Community Engagement and the Communication Response to Ebola.

Storey JD, Chitnis K, Obregon R, Garrison K.

J Health Commun. 2017;22(sup1):2-4. doi: 10.1080/10810730.2017.1283200. No abstract available.

PMID:
28854133
4.

Use of SMS-Based Surveys in the Rapid Response to the Ebola Outbreak in Liberia: Opening Community Dialogue.

Berman A, Figueroa ME, Storey JD.

J Health Commun. 2017;22(sup1):15-23. doi: 10.1080/10810730.2016.1224279.

PMID:
28854132
5.

Scaling probabilistic models of genetic variation to millions of humans.

Gopalan P, Hao W, Blei DM, Storey JD.

Nat Genet. 2016 Dec;48(12):1587-1590. doi: 10.1038/ng.3710. Epub 2016 Nov 7.

6.

Systems-level analysis of mechanisms regulating yeast metabolic flux.

Hackett SR, Zanotelli VR, Xu W, Goya J, Park JO, Perlman DH, Gibney PA, Botstein D, Storey JD, Rabinowitz JD.

Science. 2016 Oct 28;354(6311). pii: aaf2786. Epub 2016 Oct 27.

7.

Physician's knowledge, attitudes, and practices regarding seasonal influenza, pandemic influenza, and highly pathogenic avian influenza A (H5N1) virus infections of humans in Indonesia.

Mangiri A, Iuliano AD, Wahyuningrum Y, Praptiningsih CY, Lafond KE, Storms AD, Samaan G, Ariawan I, Soeharno N, Kreslake JM, Storey JD, Uyeki TM.

Influenza Other Respir Viruses. 2017 Jan;11(1):93-99. doi: 10.1111/irv.12428. Epub 2016 Oct 27.

8.

The Intersection of Care Seeking and Clinical Capacity for Patients With Highly Pathogenic Avian Influenza A (H5N1) Virus in Indonesia: Knowledge and Treatment Practices of the Public and Physicians.

Kreslake JM, Wahyuningrum Y, Iuliano AD, Storms AD, Lafond KE, Mangiri A, Praptiningsih CY, Safi B, Uyeki TM, Storey JD.

Disaster Med Public Health Prep. 2016 Dec;10(6):838-847. doi: 10.1017/dmp.2016.81. Epub 2016 Jun 14.

PMID:
27298195
9.

Beyond the E-Value: Stratified Statistics for Protein Domain Prediction.

Ochoa A, Storey JD, Llinás M, Singh M.

PLoS Comput Biol. 2015 Nov 17;11(11):e1004509. doi: 10.1371/journal.pcbi.1004509. eCollection 2015 Nov.

10.

Probabilistic models of genetic variation in structured populations applied to global human studies.

Hao W, Song M, Storey JD.

Bioinformatics. 2016 Mar 1;32(5):713-21. doi: 10.1093/bioinformatics/btv641. Epub 2015 Nov 6.

11.

A nested parallel experiment demonstrates differences in intensity-dependence between RNA-seq and microarrays.

Robinson DG, Wang JY, Storey JD.

Nucleic Acids Res. 2015 Nov 16;43(20):e131. doi: 10.1093/nar/gkv636. Epub 2015 Jun 30.

12.

Testing for genetic associations in arbitrarily structured populations.

Song M, Hao W, Storey JD.

Nat Genet. 2015 May;47(5):550-4. doi: 10.1038/ng.3244. Epub 2015 Mar 30.

13.

Statistical significance of variables driving systematic variation in high-dimensional data.

Chung NC, Storey JD.

Bioinformatics. 2015 Feb 15;31(4):545-54. doi: 10.1093/bioinformatics/btu674. Epub 2014 Oct 21.

14.

subSeq: determining appropriate sequencing depth through efficient read subsampling.

Robinson DG, Storey JD.

Bioinformatics. 2014 Dec 1;30(23):3424-6. doi: 10.1093/bioinformatics/btu552. Epub 2014 Sep 3.

15.

Gene expression profiles associated with acute myocardial infarction and risk of cardiovascular death.

Kim J, Ghasemzadeh N, Eapen DJ, Chung NC, Storey JD, Quyyumi AA, Gibson G.

Genome Med. 2014 May 30;6(5):40. doi: 10.1186/gm560. eCollection 2014.

16.

Identifying and mapping cell-type-specific chromatin programming of gene expression.

Marstrand TT, Storey JD.

Proc Natl Acad Sci U S A. 2014 Feb 11;111(6):E645-54. doi: 10.1073/pnas.1312523111. Epub 2014 Jan 27.

17.

Gene set bagging for estimating the probability a statistically significant result will replicate.

Jaffe AE, Storey JD, Ji H, Leek JT.

BMC Bioinformatics. 2013 Dec 12;14:360. doi: 10.1186/1471-2105-14-360.

18.

Design and analysis of Bar-seq experiments.

Robinson DG, Chen W, Storey JD, Gresham D.

G3 (Bethesda). 2014 Jan 10;4(1):11-8. doi: 10.1534/g3.113.008565.

19.

EPPM and willingness to respond: the role of risk and efficacy communication in strengthening public health emergency response systems.

Barnett DJ, Thompson CB, Semon NL, Errett NA, Harrison KL, Anderson MK, Ferrell JL, Freiheit JM, Hudson R, McKee M, Mejia-Echeverry A, Spitzer J, Balicer RD, Links JM, Storey JD.

Health Commun. 2014;29(6):598-609. doi: 10.1080/10410236.2013.785474. Epub 2013 Jun 25.

PMID:
23799806
20.

Character recognition as an alternate measure of television exposure among children: findings from the Alam Simsim program in Egypt.

Rimal RN, Figueroa ME, Storey JD.

J Health Commun. 2013;18(5):594-609. doi: 10.1080/10810730.2012.743625. Epub 2013 Feb 12.

PMID:
23402271
21.

Understanding newsworthiness of an emerging pandemic: international newspaper coverage of the H1N1 outbreak.

Smith KC, Rimal RN, Sandberg H, Storey JD, Lagasse L, Maulsby C, Rhoades E, Barnett DJ, Omer SB, Links JM.

Influenza Other Respir Viruses. 2013 Sep;7(5):847-53. doi: 10.1111/irv.12073. Epub 2012 Dec 24.

22.

Chronic disease and disability among Iraqi populations displaced in Jordan and Syria.

Doocy S, Sirois A, Tileva M, Storey JD, Burnham G.

Int J Health Plann Manage. 2013 Jan-Mar;28(1):e1-e12. doi: 10.1002/hpm.2119. Epub 2012 Jun 8.

PMID:
22685057
23.

The sva package for removing batch effects and other unwanted variation in high-throughput experiments.

Leek JT, Johnson WE, Parker HS, Jaffe AE, Storey JD.

Bioinformatics. 2012 Mar 15;28(6):882-3. doi: 10.1093/bioinformatics/bts034. Epub 2012 Jan 17.

24.

A genomic storm in critically injured humans.

Xiao W, Mindrinos MN, Seok J, Cuschieri J, Cuenca AG, Gao H, Hayden DL, Hennessy L, Moore EE, Minei JP, Bankey PE, Johnson JL, Sperry J, Nathens AB, Billiar TR, West MA, Brownstein BH, Mason PH, Baker HV, Finnerty CC, Jeschke MG, López MC, Klein MB, Gamelli RL, Gibran NS, Arnoldo B, Xu W, Zhang Y, Calvano SE, McDonald-Smith GP, Schoenfeld DA, Storey JD, Cobb JP, Warren HS, Moldawer LL, Herndon DN, Lowry SF, Maier RV, Davis RW, Tompkins RG; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program.

J Exp Med. 2011 Dec 19;208(13):2581-90. doi: 10.1084/jem.20111354. Epub 2011 Nov 21.

25.

How accessible was information about H1N1 flu? Literacy assessments of CDC guidance documents for different audiences.

Lagassé LP, Rimal RN, Smith KC, Storey JD, Rhoades E, Barnett DJ, Omer SB, Links J.

PLoS One. 2011;6(10):e23583. doi: 10.1371/journal.pone.0023583. Epub 2011 Oct 25. Erratum in: PLoS One. 2011;6(11). doi:10.1371/annotation/dfe07e51-a035-4eed-93a7-602a829cb49c.

26.

A computational statistics approach for estimating the spatial range of morphogen gradients.

Kanodia JS, Kim Y, Tomer R, Khan Z, Chung K, Storey JD, Lu H, Keller PJ, Shvartsman SY.

Development. 2011 Nov;138(22):4867-74. doi: 10.1242/dev.071571. Epub 2011 Oct 17.

27.

Dissecting inflammatory complications in critically injured patients by within-patient gene expression changes: a longitudinal clinical genomics study.

Desai KH, Tan CS, Leek JT, Maier RV, Tompkins RG, Storey JD; Inflammation and the Host Response to Injury Large-Scale Collaborative Research Program.

PLoS Med. 2011 Sep;8(9):e1001093. doi: 10.1371/journal.pmed.1001093. Epub 2011 Sep 13.

28.

Human transcriptome array for high-throughput clinical studies.

Xu W, Seok J, Mindrinos MN, Schweitzer AC, Jiang H, Wilhelmy J, Clark TA, Kapur K, Xing Y, Faham M, Storey JD, Moldawer LL, Maier RV, Tompkins RG, Wong WH, Davis RW, Xiao W; Inflammation and Host Response to Injury Large-Scale Collaborative Research Program.

Proc Natl Acad Sci U S A. 2011 Mar 1;108(9):3707-12. doi: 10.1073/pnas.1019753108. Epub 2011 Feb 11.

29.

A computationally efficient modular optimal discovery procedure.

Woo S, Leek JT, Storey JD.

Bioinformatics. 2011 Feb 15;27(4):509-15. doi: 10.1093/bioinformatics/btq701. Epub 2010 Dec 24.

30.

Food security and humanitarian assistance among displaced Iraqi populations in Jordan and Syria.

Doocy S, Sirois A, Anderson J, Tileva M, Biermann E, Storey JD, Burnham G.

Soc Sci Med. 2011 Jan;72(2):273-82. doi: 10.1016/j.socscimed.2010.10.023. Epub 2010 Nov 18.

PMID:
21168249
31.

System-level analysis of genes and functions affecting survival during nutrient starvation in Saccharomyces cerevisiae.

Gresham D, Boer VM, Caudy A, Ziv N, Brandt NJ, Storey JD, Botstein D.

Genetics. 2011 Jan;187(1):299-317. doi: 10.1534/genetics.110.120766. Epub 2010 Oct 13.

32.

Supervised normalization of microarrays.

Mecham BH, Nelson PS, Storey JD.

Bioinformatics. 2010 May 15;26(10):1308-15. doi: 10.1093/bioinformatics/btq118. Epub 2010 Mar 31.

33.

Assessment of local public health workers' willingness to respond to pandemic influenza through application of the extended parallel process model.

Barnett DJ, Balicer RD, Thompson CB, Storey JD, Omer SB, Semon NL, Bayer S, Cheek LV, Gateley KW, Lanza KM, Norbin JA, Slemp CC, Links JM.

PLoS One. 2009 Jul 24;4(7):e6365. doi: 10.1371/journal.pone.0006365.

34.

Cause and express.

Kruglyak L, Storey JD.

Nat Biotechnol. 2009 Jun;27(6):544-5. doi: 10.1038/nbt0609-544. No abstract available.

PMID:
19513058
35.

QVALITY: non-parametric estimation of q-values and posterior error probabilities.

Käll L, Storey JD, Noble WS.

Bioinformatics. 2009 Apr 1;25(7):964-6. doi: 10.1093/bioinformatics/btp021. Epub 2009 Feb 4.

36.

A general framework for multiple testing dependence.

Leek JT, Storey JD.

Proc Natl Acad Sci U S A. 2008 Dec 2;105(48):18718-23. doi: 10.1073/pnas.0808709105. Epub 2008 Nov 24.

37.

Eigen-R2 for dissecting variation in high-dimensional studies.

Chen LS, Storey JD.

Bioinformatics. 2008 Oct 1;24(19):2260-2. doi: 10.1093/bioinformatics/btn411. Epub 2008 Aug 20.

38.

Non-parametric estimation of posterior error probabilities associated with peptides identified by tandem mass spectrometry.

Käll L, Storey JD, Noble WS.

Bioinformatics. 2008 Aug 15;24(16):i42-8. doi: 10.1093/bioinformatics/btn294.

39.

The role of individual and community normative factors: a multilevel analysis of contraceptive use among women in union in Mali.

Kaggwa EB, Diop N, Storey JD.

Int Fam Plan Perspect. 2008 Jun;34(2):79-88. doi: 10.1363/ifpp.34.079.08.

40.

Calibrating the performance of SNP arrays for whole-genome association studies.

Hao K, Schadt EE, Storey JD.

PLoS Genet. 2008 Jun 27;4(6):e1000109. doi: 10.1371/journal.pgen.1000109.

41.

Mapping gene expression quantitative trait loci by singular value decomposition and independent component analysis.

Biswas S, Storey JD, Akey JM.

BMC Bioinformatics. 2008 May 20;9:244. doi: 10.1186/1471-2105-9-244.

42.

Mapping the genetic architecture of gene expression in human liver.

Schadt EE, Molony C, Chudin E, Hao K, Yang X, Lum PY, Kasarskis A, Zhang B, Wang S, Suver C, Zhu J, Millstein J, Sieberts S, Lamb J, GuhaThakurta D, Derry J, Storey JD, Avila-Campillo I, Kruger MJ, Johnson JM, Rohl CA, van Nas A, Mehrabian M, Drake TA, Lusis AJ, Smith RC, Guengerich FP, Strom SC, Schuetz E, Rushmore TH, Ulrich R.

PLoS Biol. 2008 May 6;6(5):e107. doi: 10.1371/journal.pbio.0060107.

43.

A genome-wide gene expression signature of environmental geography in leukocytes of Moroccan Amazighs.

Idaghdour Y, Storey JD, Jadallah SJ, Gibson G.

PLoS Genet. 2008 Apr 11;4(4):e1000052. doi: 10.1371/journal.pgen.1000052.

44.

Assigning significance to peptides identified by tandem mass spectrometry using decoy databases.

Käll L, Storey JD, MacCoss MJ, Noble WS.

J Proteome Res. 2008 Jan;7(1):29-34. Epub 2007 Dec 8. Review.

PMID:
18067246
45.

Posterior error probabilities and false discovery rates: two sides of the same coin.

Käll L, Storey JD, MacCoss MJ, Noble WS.

J Proteome Res. 2008 Jan;7(1):40-4. Epub 2007 Dec 4. Review.

PMID:
18052118
46.
47.

Optimality driven nearest centroid classification from genomic data.

Dabney AR, Storey JD.

PLoS One. 2007 Oct 3;2(10):e1002.

48.

Capturing heterogeneity in gene expression studies by surrogate variable analysis.

Leek JT, Storey JD.

PLoS Genet. 2007 Sep;3(9):1724-35. Epub 2007 Aug 1.

49.
50.

On the design and analysis of gene expression studies in human populations.

Akey JM, Biswas S, Leek JT, Storey JD.

Nat Genet. 2007 Jul;39(7):807-8; author reply 808-9. No abstract available.

PMID:
17597765

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