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Genomic dissection of an extended phenotype: Oak galling by a cynipid gall wasp.

Hearn J, Blaxter M, Schönrogge K, Nieves-Aldrey JL, Pujade-Villar J, Huguet E, Drezen JM, Shorthouse JD, Stone GN.

PLoS Genet. 2019 Nov 4;15(11):e1008398. doi: 10.1371/journal.pgen.1008398. eCollection 2019 Nov.


Gall Wasp Transcriptomes Unravel Potential Effectors Involved in Molecular Dialogues With Oak and Rose.

Cambier S, Ginis O, Moreau SJM, Gayral P, Hearn J, Stone GN, Giron D, Huguet E, Drezen JM.

Front Physiol. 2019 Jul 24;10:926. doi: 10.3389/fphys.2019.00926. eCollection 2019.


Seeing-good-gene-based mate choice: From genes to behavioural preferences.

Sun L, Zhou T, Stone GN, Wan QH, Fang SG.

J Anim Ecol. 2019 Nov;88(11):1708-1719. doi: 10.1111/1365-2656.13071. Epub 2019 Aug 15.


Molecular identification of Andricus species (Hymenoptera: Cynipidae) inducing various oak galls in Central Zagros of Iran.

Tavakoli M, Khaghaninia S, Melika G, Stone GN, Hosseini-Chegeni A.

Mitochondrial DNA A DNA Mapp Seq Anal. 2019 Jul;30(5):713-720. doi: 10.1080/24701394.2019.1622693. Epub 2019 Jun 20.


Testing the Distraction Hypothesis: Do extrafloral nectaries reduce ant-pollinator conflict?

Villamil N, Boege K, Stone GN.

J Ecol. 2019 May;107(3):1377-1391. doi: 10.1111/1365-2745.13135. Epub 2019 Mar 6.


New species of Dryocosmus Giraud gallwasps from California (Hymenoptera: Cynipidae: Cynipini) galling Chrysolepis Hjelmq. (Fagaceae).

Nicholls JA, Melika G, Demartini J, Stone GN.

Zootaxa. 2018 Dec 19;4532(3):407-433. doi: 10.11646/zootaxa.4532.3.6.


A systems approach reveals urban pollinator hotspots and conservation opportunities.

Baldock KCR, Goddard MA, Hicks DM, Kunin WE, Mitschunas N, Morse H, Osgathorpe LM, Potts SG, Robertson KM, Scott AV, Staniczenko PPA, Stone GN, Vaughan IP, Memmott J.

Nat Ecol Evol. 2019 Mar;3(3):363-373. doi: 10.1038/s41559-018-0769-y. Epub 2019 Jan 14.


Introduction: Special issue on species interactions, ecological networks and community dynamics - Untangling the entangled bank using molecular techniques.

Roslin T, Traugott M, Jonsson M, Stone GN, Creer S, Symondson WOC.

Mol Ecol. 2019 Jan;28(2):157-164. doi: 10.1111/mec.14974. No abstract available.


A new genus of oak gallwasp, Protobalandricus Melika, Nicholls Stone (Hymenoptera: Cynipidae: Cynipini) from California.

Nicholls JA, Stone GN, Melika G.

Zootaxa. 2018 Sep 7;4472(1):141-152. doi: 10.11646/zootaxa.4472.1.7.


Current status of the oak gallwasp (Hymenoptera: Cynipidae: Cynipini) fauna of the Eastern Palaearctic and Oriental Regions.

PÉnzes Z, Tang CT, Stone GN, Nicholls JA, SchwÉger S, BozsÓ M, Melika G.

Zootaxa. 2018 Jun 12;4433(2):245-289. doi: 10.11646/zootaxa.4433.2.2.


Tracking of Host Defenses and Phylogeny During the Radiation of Neotropical Inga-Feeding Sawflies (Hymenoptera; Argidae).

Endara MJ, Nicholls JA, Coley PD, Forrister DL, Younkin GC, Dexter KG, Kidner CA, Pennington RT, Stone GN, Kursar TA.

Front Plant Sci. 2018 Aug 23;9:1237. doi: 10.3389/fpls.2018.01237. eCollection 2018.


Ant-Pollinator Conflict Results in Pollinator Deterrence but no Nectar Trade-Offs.

Villamil N, Boege K, Stone GN.

Front Plant Sci. 2018 Aug 14;9:1093. doi: 10.3389/fpls.2018.01093. eCollection 2018.


Metagenomic sequencing suggests a diversity of RNA interference-like responses to viruses across multicellular eukaryotes.

Waldron FM, Stone GN, Obbard DJ.

PLoS Genet. 2018 Jul 30;14(7):e1007533. doi: 10.1371/journal.pgen.1007533. eCollection 2018 Jul.


Whole-genome data reveal the complex history of a diverse ecological community.

Bunnefeld L, Hearn J, Stone GN, Lohse K.

Proc Natl Acad Sci U S A. 2018 Jul 10;115(28):E6507-E6515. doi: 10.1073/pnas.1800334115. Epub 2018 Jun 26.


Chemocoding as an identification tool where morphological- and DNA-based methods fall short: Inga as a case study.

Endara MJ, Coley PD, Wiggins NL, Forrister DL, Younkin GC, Nicholls JA, Pennington RT, Dexter KG, Kidner CA, Stone GN, Kursar TA.

New Phytol. 2018 Apr;218(2):847-858. doi: 10.1111/nph.15020. Epub 2018 Feb 13.


Partitioning of herbivore hosts across time and food plants promotes diversification in the Megastigmus dorsalis oak gall parasitoid complex.

Nicholls JA, Schönrogge K, Preuss S, Stone GN.

Ecol Evol. 2017 Dec 25;8(2):1300-1315. doi: 10.1002/ece3.3712. eCollection 2018 Jan.


Transcriptome mining for phylogenetic markers in a recently radiated genus of tropical plants (Renealmia L.f., Zingiberaceae).

Valderrama E, Richardson JE, Kidner CA, Madriñán S, Stone GN.

Mol Phylogenet Evol. 2018 Feb;119:13-24. doi: 10.1016/j.ympev.2017.10.001. Epub 2017 Oct 4.


Tournament ABC analysis of the western Palaearctic population history of an oak gall wasp, Synergus umbraculus.

Stone GN, White SC, Csóka G, Melika G, Mutun S, Pénzes Z, Sadeghi SE, Schönrogge K, Tavakoli M, Nicholls JA.

Mol Ecol. 2017 Dec;26(23):6685-6703. doi: 10.1111/mec.14372. Epub 2017 Nov 18.


Coevolutionary arms race versus host defense chase in a tropical herbivore-plant system.

Endara MJ, Coley PD, Ghabash G, Nicholls JA, Dexter KG, Donoso DA, Stone GN, Pennington RT, Kursar TA.

Proc Natl Acad Sci U S A. 2017 Sep 5;114(36):E7499-E7505. doi: 10.1073/pnas.1707727114. Epub 2017 Aug 21.


Sweet Tetra-Trophic Interactions: Multiple Evolution of Nectar Secretion, a Defensive Extended Phenotype in Cynipid Gall Wasps.

Nicholls JA, Melika G, Stone GN.

Am Nat. 2017 Jan;189(1):67-77. doi: 10.1086/689399. Epub 2016 Nov 2.


Molecular taxonomic analysis of the plant associations of adult pollen beetles (Nitidulidae: Meligethinae), and the population structure of Brassicogethes aeneus.

Ouvrard P, Hicks DM, Mouland M, Nicholls JA, Baldock KC, Goddard MA, Kunin WE, Potts SG, Thieme T, Veromann E, Stone GN.

Genome. 2016 Dec;59(12):1101-1116. Epub 2016 Jul 18.


The city as a refuge for insect pollinators.

Hall DM, Camilo GR, Tonietto RK, Ollerton J, Ahrné K, Arduser M, Ascher JS, Baldock KC, Fowler R, Frankie G, Goulson D, Gunnarsson B, Hanley ME, Jackson JI, Langellotto G, Lowenstein D, Minor ES, Philpott SM, Potts SG, Sirohi MH, Spevak EM, Stone GN, Threlfall CG.

Conserv Biol. 2017 Feb;31(1):24-29. doi: 10.1111/cobi.12840.


Eight new species of Cycloneuroterus Melika & Tang gallwasps from Taiwan and mainland China (Hymenoptera: Cynipidae: Cynipini).

Tang CT, Sinclair F, Hearn J, Yang MM, Stone GN, Nicholls JA, Schwéger S, Melika G.

Zootaxa. 2016 Mar 11;4088(4):451-88. doi: 10.11646/zootaxa.4088.4.1.


Food for Pollinators: Quantifying the Nectar and Pollen Resources of Urban Flower Meadows.

Hicks DM, Ouvrard P, Baldock KC, Baude M, Goddard MA, Kunin WE, Mitschunas N, Memmott J, Morse H, Nikolitsi M, Osgathorpe LM, Potts SG, Robertson KM, Scott AV, Sinclair F, Westbury DB, Stone GN.

PLoS One. 2016 Jun 24;11(6):e0158117. doi: 10.1371/journal.pone.0158117. eCollection 2016.


Insect-induced effects on plants and possible effectors used by galling and leaf-mining insects to manipulate their host-plant.

Giron D, Huguet E, Stone GN, Body M.

J Insect Physiol. 2016 Jan;84:70-89. doi: 10.1016/j.jinsphys.2015.12.009. Epub 2015 Dec 23. Review.


New species of cynipid inquilines of the genus Saphonecrus (Hymenoptera: Cynipidae: Synergini) from the Eastern Palaearctic, with a re-appraisal of known species world-wide.

Schwéger S, Melika G, Tang CT, Yang MM, Stone GN, Nicholls JA, Sinclair F, Hearn J, Bozsó M, Pénzes Z.

Zootaxa. 2015 Dec 8;4054:1-84. doi: 10.11646/zootaxa.4054.1.1.


Impacts of local adaptation of forest trees on associations with herbivorous insects: implications for adaptive forest management.

Sinclair FH, Stone GN, Nicholls JA, Cavers S, Gibbs M, Butterill P, Wagner S, Ducousso A, Gerber S, Petit RJ, Kremer A, Schönrogge K.

Evol Appl. 2015 Dec;8(10):972-87. doi: 10.1111/eva.12329. Epub 2015 Oct 13.


New species of cynipid inquilines of the genus Synergus (Hymenoptera: Cynipidae: Synergini) from the Eastern Palaearctic.

Schwéger S, Melika G, Tang CT, Bihari P, Bozsó M, Stone GN, Nicholls JA, Pénzes Z.

Zootaxa. 2015 Aug 12;3999(4):451-97. doi: 10.11646/zootaxa.3999.4.1.


Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae).

Nicholls JA, Pennington RT, Koenen EJ, Hughes CE, Hearn J, Bunnefeld L, Dexter KG, Stone GN, Kidner CA.

Front Plant Sci. 2015 Sep 17;6:710. doi: 10.3389/fpls.2015.00710. eCollection 2015.


Corrigendum: Patterns of diversification amongst tropical regions compared: a case study in Sapotaceae.

Armstrong KE, Stone GN, Nicholls JA, Valderrama E, Anderberg AA, Smedmark J, Gautier L, Naciri Y, Milne R, Richardson JE.

Front Genet. 2015 Mar 5;6:86. doi: 10.3389/fgene.2015.00086. eCollection 2015.


Where is the UK's pollinator biodiversity? The importance of urban areas for flower-visiting insects.

Baldock KC, Goddard MA, Hicks DM, Kunin WE, Mitschunas N, Osgathorpe LM, Potts SG, Robertson KM, Scott AV, Stone GN, Vaughan IP, Memmott J.

Proc Biol Sci. 2015 Mar 22;282(1803):20142849. doi: 10.1098/rspb.2014.2849.


Patterns of diversification amongst tropical regions compared: a case study in Sapotaceae.

Armstrong KE, Stone GN, Nicholls JA, Valderrama E, Anderberg AA, Smedmark J, Gautier L, Naciri Y, Milne R, Richardson JE.

Front Genet. 2014 Dec 3;5:362. doi: 10.3389/fgene.2014.00362. eCollection 2014. Erratum in: Front Genet. 2015;6:86.


ABC inference of multi-population divergence with admixture from unphased population genomic data.

Robinson JD, Bunnefeld L, Hearn J, Stone GN, Hickerson MJ.

Mol Ecol. 2014 Sep;23(18):4458-71. doi: 10.1111/mec.12881. Epub 2014 Sep 6.


The founding charter of the Genomic Observatories Network.

Davies N, Field D, Amaral-Zettler L, Clark MS, Deck J, Drummond A, Faith DP, Geller J, Gilbert J, Glöckner FO, Hirsch PR, Leong JA, Meyer C, Obst M, Planes S, Scholin C, Vogler AP, Gates RD, Toonen R, Berteaux-Lecellier V, Barbier M, Barker K, Bertilsson S, Bicak M, Bietz MJ, Bobe J, Bodrossy L, Borja A, Coddington J, Fuhrman J, Gerdts G, Gillespie R, Goodwin K, Hanson PC, Hero JM, Hoekman D, Jansson J, Jeanthon C, Kao R, Klindworth A, Knight R, Kottmann R, Koo MS, Kotoulas G, Lowe AJ, Marteinsson VT, Meyer F, Morrison N, Myrold DD, Pafilis E, Parker S, Parnell JJ, Polymenakou PN, Ratnasingham S, Roderick GK, Rodriguez-Ezpeleta N, Schonrogge K, Simon N, Valette-Silver NJ, Springer YP, Stone GN, Stones-Havas S, Sansone SA, Thibault KM, Wecker P, Wichels A, Wooley JC, Yahara T, Zingone A; GOs-COS.

Gigascience. 2014 Mar 7;3(1):2. doi: 10.1186/2047-217X-3-2.


Perched at the mito-nuclear crossroads: divergent mitochondrial lineages correlate with environment in the face of ongoing nuclear gene flow in an Australian bird.

Pavlova A, Amos JN, Joseph L, Loynes K, Austin JJ, Keogh JS, Stone GN, Nicholls JA, Sunnucks P.

Evolution. 2013 Dec;67(12):3412-28. doi: 10.1111/evo.12107. Epub 2013 Apr 9.


Likelihood-based inference of population history from low-coverage de novo genome assemblies.

Hearn J, Stone GN, Bunnefeld L, Nicholls JA, Barton NH, Lohse K.

Mol Ecol. 2014 Jan;23(1):198-211. doi: 10.1111/mec.12578.


Recommendations for using msBayes to incorporate uncertainty in selecting an abc model prior: a response to oaks et Al.

Hickerson MJ, Stone GN, Lohse K, Demos TC, Xie X, Landerer C, Takebayashi N.

Evolution. 2014 Jan;68(1):284-94. doi: 10.1111/evo.12241. Epub 2013 Sep 16. Erratum in: Evolution. 2014 May;68(5):1552.


Extending glacial refugia for a European tree: genetic markers show that Iberian populations of white elm are native relicts and not introductions.

Fuentes-Utrilla P, Venturas M, Hollingsworth PM, Squirrell J, Collada C, Stone GN, Gil L.

Heredity (Edinb). 2014 Feb;112(2):105-13. doi: 10.1038/hdy.2013.81. Epub 2013 Sep 11.


Life history, natural enemies, and management of Disholcaspis quercusvirens (Hymenoptera: Cynipidae) on live oak trees.

Bird JP, Melika G, Nicholls JA, Stone GN, Buss EA.

J Econ Entomol. 2013 Aug;106(4):1747-56.


A road map for molecular ecology.

Andrew RL, Bernatchez L, Bonin A, Buerkle CA, Carstens BC, Emerson BC, Garant D, Giraud T, Kane NC, Rogers SM, Slate J, Smith H, Sork VL, Stone GN, Vines TH, Waits L, Widmer A, Rieseberg LH.

Mol Ecol. 2013 May;22(10):2605-26. doi: 10.1111/mec.12319. Review.


Native birds and alien insects: spatial density dependence in songbird predation of invading oak gallwasps.

Schönrogge K, Begg T, Stone GN.

PLoS One. 2013;8(1):e53959. doi: 10.1371/journal.pone.0053959. Epub 2013 Jan 14.


A new genus of oak gallwasp, Cyclocynips Melika, Tang & Sinclair (Hymenoptera: Cynipidae: Cynipini), with descriptions of two new species from Taiwan.

Melika G, Tang CT, Sinclair F, Yang MM, Lohse K, Hearn J, Nicholls JA, Stone GN.

Zootaxa. 2013;3630:534-48.


Catalogue of parasitoids and inquilines in cynipid oak galls in the West Palaearctic.

Askew RR, Melika G, Pujade-Villar J, Schönrogge K, Stone GN, Nieves-Aldrey JL.

Zootaxa. 2013;3643:1-133.


A likelihood-based comparison of population histories in a parasitoid guild.

Lohse K, Barton NH, Melika G, Stone GN.

Mol Ecol. 2012 Sep;21(18):4605-17. doi: 10.1111/j.1365-294X.2012.05700.x. Epub 2012 Aug 14.


Mitochondrial barcodes are diagnostic of shared refugia but not species in hybridizing oak gallwasps.

Nicholls JA, Challis RJ, Mutun S, Stone GN.

Mol Ecol. 2012 Aug;21(16):4051-62. doi: 10.1111/j.1365-294X.2012.05683.x. Epub 2012 Jun 25.


Reconstructing community assembly in time and space reveals enemy escape in a Western Palearctic insect community.

Stone GN, Lohse K, Nicholls JA, Fuentes-Utrilla P, Sinclair F, Schönrogge K, Csóka G, Melika G, Nieves-Aldrey JL, Pujade-Villar J, Tavakoli M, Askew RR, Hickerson MJ.

Curr Biol. 2012 Mar 20;22(6):532-7. doi: 10.1016/j.cub.2012.01.059. Epub 2012 Mar 8.


Daily temporal structure in African savanna flower visitation networks and consequences for network sampling.

Baldock KC, Memmott J, Ruiz-Guajardo JC, Roze D, Stone GN.

Ecology. 2011 Mar;92(3):687-98.


Developing EPIC markers for chalcidoid Hymenoptera from EST and genomic data.

Lohse K, Sharanowski B, Blaxter M, Nicholls JA, Stone GN.

Mol Ecol Resour. 2011 May;11(3):521-9. doi: 10.1111/j.1755-0998.2010.02956.x. Epub 2010 Dec 20.


Controlling for non-independence in comparative analysis of patterns across populations within species.

Stone GN, Nee S, Felsenstein J.

Philos Trans R Soc Lond B Biol Sci. 2011 May 12;366(1569):1410-24. doi: 10.1098/rstb.2010.0311. Review.


Inferring the colonization of a mountain range--refugia vs. nunatak survival in high alpine ground beetles.

Lohse K, Nicholls JA, Stone GN.

Mol Ecol. 2011 Jan;20(2):394-408. doi: 10.1111/j.1365-294X.2010.04929.x. Epub 2010 Nov 12.


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