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Items: 1 to 50 of 64

1.

Methadone maintenance treatment among patients exposed to illicit fentanyl in Rhode Island: Safety, dose, retention, and relapse at 6 months.

Stone AC, Carroll JJ, Rich JD, Green TC.

Drug Alcohol Depend. 2018 Aug 25;192:94-97. doi: 10.1016/j.drugalcdep.2018.07.019. [Epub ahead of print]

PMID:
30243145
2.

In-solution Y-chromosome capture-enrichment on ancient DNA libraries.

Cruz-Dávalos DI, Nieves-Colón MA, Sockell A, Poznik GD, Schroeder H, Stone AC, Bustamante CD, Malaspinas AS, Ávila-Arcos MC.

BMC Genomics. 2018 Aug 14;19(1):608. doi: 10.1186/s12864-018-4945-x.

3.

Novel anelloviruses identified in buccal swabs of Antarctic fur seals.

Crane A, Goebel ME, Kraberger S, Stone AC, Varsani A.

Virus Genes. 2018 Oct;54(5):719-723. doi: 10.1007/s11262-018-1585-9. Epub 2018 Jul 3.

PMID:
29971737
4.

Differential preservation of endogenous human and microbial DNA in dental calculus and dentin.

Mann AE, Sabin S, Ziesemer K, Vågene ÅJ, Schroeder H, Ozga AT, Sankaranarayanan K, Hofman CA, Fellows Yates JA, Salazar-García DC, Frohlich B, Aldenderfer M, Hoogland M, Read C, Milner GR, Stone AC, Lewis CM Jr, Krause J, Hofman C, Bos KI, Warinner C.

Sci Rep. 2018 Jun 29;8(1):9822. doi: 10.1038/s41598-018-28091-9.

5.

Comparison of two ancient DNA extraction protocols for skeletal remains from tropical environments.

Nieves-Colón MA, Ozga AT, Pestle WJ, Cucina A, Tiesler V, Stanton TW, Stone AC.

Am J Phys Anthropol. 2018 Aug;166(4):824-836. doi: 10.1002/ajpa.23472. Epub 2018 Mar 30.

PMID:
29603124
6.

A Biomechanical Comparison of Fifth Metatarsal Jones Fracture Fixation Methods.

Duplantier NL, Mitchell RJ, Zambrano S, Stone AC, Delgado DA, Lambert BS, Moreno MR, Harris JD, McCulloch PC, Lintner DM, Varner KE.

Am J Sports Med. 2018 Apr;46(5):1220-1227. doi: 10.1177/0363546517753376. Epub 2018 Feb 21.

PMID:
29466679
7.

Assessment of DNA Methylation Patterns in the Bone and Cartilage of a Nonhuman Primate Model of Osteoarthritis.

Housman G, Havill LM, Quillen EE, Comuzzie AG, Stone AC.

Cartilage. 2018 Feb 1:1947603518759173. doi: 10.1177/1947603518759173. [Epub ahead of print]

PMID:
29457464
8.

Mycobacterium leprae genomes from naturally infected nonhuman primates.

Honap TP, Pfister LA, Housman G, Mills S, Tarara RP, Suzuki K, Cuozzo FP, Sauther ML, Rosenberg MS, Stone AC.

PLoS Negl Trop Dis. 2018 Jan 30;12(1):e0006190. doi: 10.1371/journal.pntd.0006190. eCollection 2018 Jan.

9.

Insights from the Genome Sequence of Mycobacterium lepraemurium: Massive Gene Decay and Reductive Evolution.

Benjak A, Honap TP, Avanzi C, Becerril-Villanueva E, Estrada-García I, Rojas-Espinosa O, Stone AC, Cole ST.

MBio. 2017 Oct 17;8(5). pii: e01283-17. doi: 10.1128/mBio.01283-17.

10.

Facing the facts: The Runx2 gene is associated with variation in facial morphology in primates.

Ritzman TB, Banovich N, Buss KP, Guida J, Rubel MA, Pinney J, Khang B, Ravosa MJ, Stone AC.

J Hum Evol. 2017 Oct;111:139-151. doi: 10.1016/j.jhevol.2017.06.014. Epub 2017 Aug 9.

PMID:
28874267
11.

Phylogeny of the jacchus group of Callithrix marmosets based on complete mitochondrial genomes.

Malukiewicz J, Hepp CM, Guschanski K, Stone AC.

Am J Phys Anthropol. 2017 Jan;162(1):157-169. doi: 10.1002/ajpa.23105. Epub 2016 Oct 20.

PMID:
27762445
12.

Application of PE-RADSeq to the study of genomic diversity and divergence of two Brazilian marmoset species (Callithrix jacchus and C. penicillata).

Malukiewicz J, Guschanski K, Grativol AD, Oliveira MA, Ruiz-Miranda CR, Stone AC.

Am J Primatol. 2017 Feb;79(2):1-12. doi: 10.1002/ajp.22587. Epub 2016 Aug 12.

PMID:
27521158
13.

Correction: Validation of qPCR Methods for the Detection of Mycobacterium in New World Animal Reservoirs.

Housman G, Malukiewicz J, Boere V, Grativol AD, Pereira LC, Silva IO, Ruiz-Miranda CR, Truman R, Stone AC.

PLoS Negl Trop Dis. 2016 May 24;10(5):e0004756. doi: 10.1371/journal.pntd.0004756. eCollection 2016 May.

14.

Successful enrichment and recovery of whole mitochondrial genomes from ancient human dental calculus.

Ozga AT, Nieves-Colón MA, Honap TP, Sankaranarayanan K, Hofman CA, Milner GR, Lewis CM Jr, Stone AC, Warinner C.

Am J Phys Anthropol. 2016 Jun;160(2):220-8. doi: 10.1002/ajpa.22960. Epub 2016 Mar 16.

15.

Phylogenomic reconstruction supports supercontinent origins for Leishmania.

Harkins KM, Schwartz RS, Cartwright RA, Stone AC.

Infect Genet Evol. 2016 Mar;38:101-109. doi: 10.1016/j.meegid.2015.11.030. Epub 2015 Dec 18.

PMID:
26708057
16.

Pre-Columbian tuberculosis in Tierra del Fuego? Discussion of the paleopathological and molecular evidence.

Guichón RA, Buikstra JE, Stone AC, Harkins KM, Suby JA, Massone M, Prieto Lglesias A, Wilbur A, Constantinescu F, Rodríguez Martín C.

Int J Paleopathol. 2015 Dec;11:92-101. doi: 10.1016/j.ijpp.2015.09.003. Epub 2015 Nov 17.

PMID:
28802973
17.

Validation of qPCR Methods for the Detection of Mycobacterium in New World Animal Reservoirs.

Housman G, Malukiewicz J, Boere V, Grativol AD, Pereira LC, Silva Ide O, Ruiz-Miranda CR, Truman R, Stone AC.

PLoS Negl Trop Dis. 2015 Nov 16;9(11):e0004198. doi: 10.1371/journal.pntd.0004198. eCollection 2015 Nov. Erratum in: PLoS Negl Trop Dis. 2016 May;10(5):e0004756.

18.

A composite genome approach to identify phylogenetically informative data from next-generation sequencing.

Schwartz RS, Harkins KM, Stone AC, Cartwright RA.

BMC Bioinformatics. 2015 Jun 11;16:193. doi: 10.1186/s12859-015-0632-y.

19.

Natural and Anthropogenic Hybridization in Two Species of Eastern Brazilian Marmosets (Callithrix jacchus and C. penicillata).

Malukiewicz J, Boere V, Fuzessy LF, Grativol AD, de Oliveira E Silva I, Pereira LC, Ruiz-Miranda CR, Valença YM, Stone AC.

PLoS One. 2015 Jun 10;10(6):e0127268. doi: 10.1371/journal.pone.0127268. eCollection 2015.

20.

Population genetic structure of traditional populations in the Peruvian Central Andes and implications for South American population history.

Cabana GS, Lewis CM Jr, Tito RY, Covey RA, Cáceres AM, Cruz AF, Durand D, Housman G, Hulsey BI, Iannacone GC, López PW, Martínez R, Medina Á, Dávila OO, Pinto KP, Santillán SI, Domínguez PR, Rubel M, Smith HF, Smith SE, Massa VR, Lizárraga B, Stone AC.

Hum Biol. 2014 Summer;86(3):147-65. Erratum in: Hum Biol. 2015 Oct;87(4):376-377.

PMID:
25836744
21.

Ancient pathogen genomics: insights into timing and adaptation.

Harkins KM, Stone AC.

J Hum Evol. 2015 Feb;79:137-49. doi: 10.1016/j.jhevol.2014.11.002. Epub 2014 Dec 18.

PMID:
25532802
22.

Screening ancient tuberculosis with qPCR: challenges and opportunities.

Harkins KM, Buikstra JE, Campbell T, Bos KI, Johnson ED, Krause J, Stone AC.

Philos Trans R Soc Lond B Biol Sci. 2015 Jan 19;370(1660):20130622. doi: 10.1098/rstb.2013.0622.

23.

Hybridization effects and genetic diversity of the common and black-tufted marmoset (Callithrix jacchus and Callithrix penicillata) mitochondrial control region.

Malukiewicz J, Boere V, Fuzessy LF, Grativol AD, French JA, de Oliveira e Silva I, Pereira LC, Ruiz-Miranda CR, Valença YM, Stone AC.

Am J Phys Anthropol. 2014 Dec;155(4):522-36. doi: 10.1002/ajpa.22605. Epub 2014 Sep 3. Erratum in: Am J Phys Anthropol. 2015 Sep;158(1):173.

PMID:
25186076
24.

Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis.

Bos KI, Harkins KM, Herbig A, Coscolla M, Weber N, Comas I, Forrest SA, Bryant JM, Harris SR, Schuenemann VJ, Campbell TJ, Majander K, Wilbur AK, Guichon RA, Wolfe Steadman DL, Cook DC, Niemann S, Behr MA, Zumarraga M, Bastida R, Huson D, Nieselt K, Young D, Parkhill J, Buikstra JE, Gagneux S, Stone AC, Krause J.

Nature. 2014 Oct 23;514(7523):494-7. doi: 10.1038/nature13591. Epub 2014 Aug 20.

25.

Rapid evolution of BRCA1 and BRCA2 in humans and other primates.

Lou DI, McBee RM, Le UQ, Stone AC, Wilkerson GK, Demogines AM, Sawyer SL.

BMC Evol Biol. 2014 Jul 11;14:155. doi: 10.1186/1471-2148-14-155.

26.

Sequence diversity of Pan troglodytes subspecies and the impact of WFDC6 selective constraints in reproductive immunity.

Ferreira Z, Hurle B, Andrés AM, Kretzschmar WW, Mullikin JC, Cherukuri PF, Cruz P, Gonder MK, Stone AC, Tishkoff S, Swanson WJ; NISC Comparative Sequencing Program, Green ED, Clark AG, Seixas S.

Genome Biol Evol. 2013;5(12):2512-23. doi: 10.1093/gbe/evt198. Erratum in: Genome Biol Evol. 2014;6(2):406.

27.

An anthropological genetic perspective on Creolization in the Anglophone Caribbean.

Torres JB, Stone AC, Kittles R.

Am J Phys Anthropol. 2013 May;151(1):135-43. doi: 10.1002/ajpa.22261. Epub 2013 Mar 29.

PMID:
23553646
28.

Regulatory element copy number differences shape primate expression profiles.

Iskow RC, Gokcumen O, Abyzov A, Malukiewicz J, Zhu Q, Sukumar AT, Pai AA, Mills RE, Habegger L, Cusanovich DA, Rubel MA, Perry GH, Gerstein M, Stone AC, Gilad Y, Lee C.

Proc Natl Acad Sci U S A. 2012 Jul 31;109(31):12656-61. doi: 10.1073/pnas.1205199109. Epub 2012 Jul 13.

29.

Long-term balancing selection at the antiviral gene OAS1 in Central African chimpanzees.

Ferguson W, Dvora S, Fikes RW, Stone AC, Boissinot S.

Mol Biol Evol. 2012 Apr;29(4):1093-103. doi: 10.1093/molbev/msr247. Epub 2011 Nov 21.

30.

Echocardiographic evidence of pulmonary hypertension is associated with increased 1-year mortality in patients admitted with chronic obstructive pulmonary disease.

Stone AC, Machan JT, Mazer J, Casserly B, Klinger JR.

Lung. 2011 Jun;189(3):207-12. doi: 10.1007/s00408-011-9293-4. Epub 2011 May 10.

PMID:
21556789
31.

More reliable estimates of divergence times in Pan using complete mtDNA sequences and accounting for population structure.

Stone AC, Battistuzzi FU, Kubatko LS, Perry GH Jr, Trudeau E, Lin H, Kumar S.

Philos Trans R Soc Lond B Biol Sci. 2010 Oct 27;365(1556):3277-88. doi: 10.1098/rstb.2010.0096.

32.

Drought negatively affects communities on a foundation tree: growth rings predict diversity.

Stone AC, Gehring CA, Whitham TG.

Oecologia. 2010 Nov;164(3):751-61. doi: 10.1007/s00442-010-1684-3. Epub 2010 Jun 26.

PMID:
20582440
33.

Haplotype structure and divergence at human and chimpanzee serotonin transporter and receptor genes: implications for behavioral disorder association analyses.

Claw KG, Tito RY, Stone AC, Verrelli BC.

Mol Biol Evol. 2010 Jul;27(7):1518-29. doi: 10.1093/molbev/msq030. Epub 2010 Jan 29.

34.

Tuberculosis and leprosy in perspective.

Stone AC, Wilbur AK, Buikstra JE, Roberts CA.

Am J Phys Anthropol. 2009;140 Suppl 49:66-94. doi: 10.1002/ajpa.21185.

PMID:
19890861
35.

Different selective pressures shape the molecular evolution of color vision in chimpanzee and human populations.

Verrelli BC, Lewis CM Jr, Stone AC, Perry GH.

Mol Biol Evol. 2008 Dec;25(12):2735-43. doi: 10.1093/molbev/msn220. Epub 2008 Oct 1.

36.

Copy number variation and evolution in humans and chimpanzees.

Perry GH, Yang F, Marques-Bonet T, Murphy C, Fitzgerald T, Lee AS, Hyland C, Stone AC, Hurles ME, Tyler-Smith C, Eichler EE, Carter NP, Lee C, Redon R.

Genome Res. 2008 Nov;18(11):1698-710. doi: 10.1101/gr.082016.108. Epub 2008 Sep 4.

37.

Mitochondrial DNA and the peopling of South America.

Lewis CM Jr, Lizárraga B, Tito RY, López PW, Iannacone GC, Medina A, Martínez R, Polo SI, De La Cruz AF, Cáceres AM, Stone AC.

Hum Biol. 2007 Apr;79(2):159-78.

PMID:
18027812
38.

Diet and the evolution of human amylase gene copy number variation.

Perry GH, Dominy NJ, Claw KG, Lee AS, Fiegler H, Redon R, Werner J, Villanea FA, Mountain JL, Misra R, Carter NP, Lee C, Stone AC.

Nat Genet. 2007 Oct;39(10):1256-60. Epub 2007 Sep 9.

39.

Other systemic manifestations of chronic obstructive pulmonary disease.

Stone AC, Nici L.

Clin Chest Med. 2007 Sep;28(3):553-7, vi. Review.

PMID:
17720043
40.

Mitochondrial and Y chromosome diversity in the English-speaking Caribbean.

Benn Torres J, Kittles RA, Stone AC.

Ann Hum Genet. 2007 Nov;71(Pt 6):782-90. Epub 2007 Jun 27.

41.

Identification of the imprinted KLF14 transcription factor undergoing human-specific accelerated evolution.

Parker-Katiraee L, Carson AR, Yamada T, Arnaud P, Feil R, Abu-Amero SN, Moore GE, Kaneda M, Perry GH, Stone AC, Lee C, Meguro-Horike M, Sasaki H, Kobayashi K, Nakabayashi K, Scherer SW.

PLoS Genet. 2007 May 4;3(5):e65. Epub 2007 Mar 12.

42.

Genetic structure of chimpanzee populations.

Becquet C, Patterson N, Stone AC, Przeworski M, Reich D.

PLoS Genet. 2007 Apr 20;3(4):e66. Epub 2007 Mar 13.

43.

Vitamin D receptor gene polymorphisms and susceptibility M. tuberculosis in native Paraguayans.

Wilbur AK, Kubatko LS, Hurtado AM, Hill KR, Stone AC.

Tuberculosis (Edinb). 2007 Jul;87(4):329-37. Epub 2007 Mar 6.

PMID:
17337247
44.

Combining sperm typing and linkage disequilibrium analyses reveals differences in selective pressures or recombination rates across human populations.

Clark VJ, Ptak SE, Tiemann I, Qian Y, Coop G, Stone AC, Przeworski M, Arnheim N, Di Rienzo A.

Genetics. 2007 Feb;175(2):795-804. Epub 2006 Dec 6.

45.

Focusing on comparative ape population genetics in the post-genomic age.

Stone AC, Verrelli BC.

Curr Opin Genet Dev. 2006 Dec;16(6):586-91. Epub 2006 Sep 28. Review.

PMID:
17010600
46.

Contrasting histories of G6PD molecular evolution and malarial resistance in humans and chimpanzees.

Verrelli BC, Tishkoff SA, Stone AC, Touchman JW.

Mol Biol Evol. 2006 Aug;23(8):1592-601. Epub 2006 Jun 2.

PMID:
16751255
47.

Hotspots for copy number variation in chimpanzees and humans.

Perry GH, Tchinda J, McGrath SD, Zhang J, Picker SR, Cáceres AM, Iafrate AJ, Tyler-Smith C, Scherer SW, Eichler EE, Stone AC, Lee C.

Proc Natl Acad Sci U S A. 2006 May 23;103(21):8006-11. Epub 2006 May 15.

48.

Independent evolution of bitter-taste sensitivity in humans and chimpanzees.

Wooding S, Bufe B, Grassi C, Howard MT, Stone AC, Vazquez M, Dunn DM, Meyerhof W, Weiss RB, Bamshad MJ.

Nature. 2006 Apr 13;440(7086):930-4.

PMID:
16612383
49.

Molecular evolution of the primate developmental genes MSX1 and PAX9.

Perry GH, Verrelli BC, Stone AC.

Mol Biol Evol. 2006 Mar;23(3):644-54. Epub 2005 Dec 2.

PMID:
16326750
50.

Contrasting effects of natural selection on human and chimpanzee CC chemokine receptor 5.

Wooding S, Stone AC, Dunn DM, Mummidi S, Jorde LB, Weiss RK, Ahuja S, Bamshad MJ.

Am J Hum Genet. 2005 Feb;76(2):291-301. Epub 2004 Dec 29. Erratum in: Am J Hum Genet. 2005 Apr;76(4):715.

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